CD2BP2-DT

Summary

CD2BP2-DT (CD2BP2 divergent transcript, HGNC:53029) is a long non-coding RNA gene on chromosome 16p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53029
Approved symbol	CD2BP2-DT
Name	CD2BP2 divergent transcript
Location	16p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260219
Ensembl biotype	lncRNA
Entrez	101928707
RNAcentral	URS00026A1B00 — lncRNA, 4040 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000563252, ENST00000687080, ENST00000688695, ENST00000688846, ENST00000690312, ENST00000701321, ENST00000762115, ENST00000762116, ENST00000762117, ENST00000762118, ENST00000762119, ENST00000762120, ENST00000762121, ENST00000762122, ENST00000762123, ENST00000762124, ENST00000762125, ENST00000762126, ENST00000762127, ENST00000762128, ENST00000762129, ENST00000762130, ENST00000762131, ENST00000762132, ENST00000762133, ENST00000762134, ENST00000762135, ENST00000762136, ENST00000762137, ENST00000762138, ENST00000762139

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563252 — 2 exons

Exon	Start	End
ENSE00004116980	30356293	30357116
ENSE00004116989	30355416	30355620

Expression profiles

Bgee: expression breadth ubiquitous, 158 present calls, max score 77.59.

FANTOM5 (CAGE): breadth broad, TPM avg 1.7651 / max 25.9631, expressed in 783 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
153638	1.7651	783

Top tissues by expression

243 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.59	gold quality
mucosa of transverse colon	UBERON:0004991	74.33	gold quality
granulocyte	CL:0000094	72.83	gold quality
right adrenal gland	UBERON:0001233	72.58	gold quality
right adrenal gland cortex	UBERON:0035827	72.52	gold quality
left adrenal gland cortex	UBERON:0035825	71.78	gold quality
leukocyte	CL:0000738	71.75	gold quality
monocyte	CL:0000576	71.65	gold quality
left adrenal gland	UBERON:0001234	71.18	gold quality
right lobe of liver	UBERON:0001114	70.92	gold quality
right uterine tube	UBERON:0001302	70.12	gold quality
islet of Langerhans	UBERON:0000006	69.89	gold quality
adrenal cortex	UBERON:0001235	69.74	gold quality
bone marrow cell	CL:0002092	69.03	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.86	gold quality
adrenal gland	UBERON:0002369	68.65	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	68.63	gold quality
rectum	UBERON:0001052	68.22	gold quality
apex of heart	UBERON:0002098	67.44	gold quality
right lobe of thyroid gland	UBERON:0001119	67.33	gold quality
left lobe of thyroid gland	UBERON:0001120	67.23	gold quality
thyroid gland	UBERON:0002046	66.64	gold quality
body of stomach	UBERON:0001161	66.33	gold quality
sural nerve	UBERON:0015488	66.15	gold quality
metanephros cortex	UBERON:0010533	66.14	gold quality
adenohypophysis	UBERON:0002196	65.39	gold quality
smooth muscle tissue	UBERON:0001135	65.07	gold quality
transverse colon	UBERON:0001157	64.96	gold quality
pancreas	UBERON:0001264	64.96	gold quality
gall bladder	UBERON:0002110	64.82	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.54

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.