CD46
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Also known as TRA2.10MGC26544TLX
Summary
CD46 (CD46 molecule, HGNC:6953) is a protein-coding gene on chromosome 1q32.2, encoding Membrane cofactor protein (P15529). Acts as a cofactor for complement factor I, a serine protease which protects autologous cells against complement-mediated injury by cleaving C3b and C4b deposited on host tissue.
The protein encoded by this gene is a type I membrane protein and is a regulatory part of the complement system. The encoded protein has cofactor activity for inactivation of complement components C3b and C4b by serum factor I, which protects the host cell from damage by complement. In addition, the encoded protein can act as a receptor for the Edmonston strain of measles virus, human herpesvirus-6, and type IV pili of pathogenic Neisseria. Finally, the protein encoded by this gene may be involved in the fusion of the spermatozoa with the oocyte during fertilization. Mutations at this locus have been associated with susceptibility to hemolytic uremic syndrome. Alternatively spliced transcript variants encoding different isoforms have been described.
Source: NCBI Gene 4179 — RefSeq curated summary.
At a glance
- Gene–disease (curated): atypical hemolytic-uremic syndrome (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 50
- Clinical variants (ClinVar): 579 total — 27 pathogenic, 16 likely-pathogenic
- Phenotypes (HPO): 44
- MANE Select transcript:
NM_172351
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6953 |
| Approved symbol | CD46 |
| Name | CD46 molecule |
| Location | 1q32.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TRA2.10, MGC26544, TLX |
| Ensembl gene | ENSG00000117335 |
| Ensembl biotype | protein_coding |
| OMIM | 120920 |
| Entrez | 4179 |
Gene structure
Transcript identifiers
Ensembl transcripts: 50 — 31 protein_coding, 15 retained_intron, 3 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000322875, ENST00000322918, ENST00000354848, ENST00000357714, ENST00000358170, ENST00000360212, ENST00000367041, ENST00000367042, ENST00000367047, ENST00000462968, ENST00000464082, ENST00000469535, ENST00000471987, ENST00000480003, ENST00000488596, ENST00000490278, ENST00000493796, ENST00000496723, ENST00000636114, ENST00000695777, ENST00000695778, ENST00000695779, ENST00000695780, ENST00000695781, ENST00000695782, ENST00000695783, ENST00000695784, ENST00000695785, ENST00000695786, ENST00000695787, ENST00000695788, ENST00000695789, ENST00000695790, ENST00000887052, ENST00000887053, ENST00000887054, ENST00000887055, ENST00000887056, ENST00000887057, ENST00000887058, ENST00000887059, ENST00000915207, ENST00000970370, ENST00000970371, ENST00000970372, ENST00000970373, ENST00000970374, ENST00000970375, ENST00000970376, ENST00000970377
RefSeq mRNA: 12 — MANE Select: NM_172351
NM_002389, NM_153826, NM_172350, NM_172351, NM_172352, NM_172353, NM_172355, NM_172356, NM_172357, NM_172358, NM_172359, NM_172361
CCDS: CCDS1479, CCDS1480, CCDS1481, CCDS1482, CCDS1484, CCDS1485, CCDS31008, CCDS31009, CCDS86048
Canonical transcript exons
ENST00000367042 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000792032 | 207767779 | 207767823 |
| ENSE00001167601 | 207767013 | 207767195 |
| ENSE00001167611 | 207761249 | 207761446 |
| ENSE00003504276 | 207757540 | 207757642 |
| ENSE00003509765 | 207759639 | 207759724 |
| ENSE00003520315 | 207785071 | 207785106 |
| ENSE00003558309 | 207770321 | 207770362 |
| ENSE00003582519 | 207783292 | 207783330 |
| ENSE00003965001 | 207752054 | 207752309 |
| ENSE00003965009 | 207757014 | 207757202 |
| ENSE00003965011 | 207790253 | 207790345 |
| ENSE00003965018 | 207785619 | 207785682 |
| ENSE00003965028 | 207793519 | 207795504 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.52.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 157.7557 / max 2201.4763, expressed in 1826 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 8260 | 156.1745 | 1826 |
| 8261 | 1.1257 | 416 |
| 8262 | 0.3967 | 187 |
| 201930 | 0.0588 | 22 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| palpebral conjunctiva | UBERON:0001812 | 99.52 | gold quality |
| adrenal tissue | UBERON:0018303 | 99.39 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 99.19 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.16 | gold quality |
| bronchial epithelial cell | CL:0002328 | 99.10 | gold quality |
| jejunal mucosa | UBERON:0000399 | 99.09 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 99.04 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.04 | gold quality |
| parotid gland | UBERON:0001831 | 98.99 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.98 | gold quality |
| adrenal cortex | UBERON:0001235 | 98.98 | gold quality |
| placenta | UBERON:0001987 | 98.98 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.98 | gold quality |
| right uterine tube | UBERON:0001302 | 98.93 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 98.92 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.90 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 98.88 | gold quality |
| adrenal gland | UBERON:0002369 | 98.84 | gold quality |
| right lung | UBERON:0002167 | 98.82 | gold quality |
| body of pancreas | UBERON:0001150 | 98.79 | gold quality |
| caput epididymis | UBERON:0004358 | 98.79 | gold quality |
| oral cavity | UBERON:0000167 | 98.78 | gold quality |
| colonic mucosa | UBERON:0000317 | 98.76 | gold quality |
| islet of Langerhans | UBERON:0000006 | 98.75 | gold quality |
| visceral pleura | UBERON:0002401 | 98.73 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 98.72 | gold quality |
| lower lobe of lung | UBERON:0008949 | 98.72 | gold quality |
| minor salivary gland | UBERON:0001830 | 98.71 | gold quality |
| metanephros | UBERON:0000081 | 98.65 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 98.60 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8530 | yes | 702.87 |
| E-GEOD-135922 | yes | 42.85 |
| E-HCAD-10 | yes | 13.36 |
| E-GEOD-76312 | no | 856.04 |
| E-MTAB-2983 | no | 297.38 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
5 targets.
| Target | Regulation |
|---|---|
| DLL1 | Repression |
| JAG1 | Activation |
| JAG2 | Activation |
| NOTCH1 | Activation |
| NOTCH2 | Activation |
Upstream regulators (CollecTRI, top): CEBPB, NFKB, RELA, STAT3
miRNA regulators (miRDB)
101 targeting CD46, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
Literature-anchored findings (GeneRIF, showing 40)
- CD46 costimulation induces morphological changes in T cells and activates the MAP Kinase Signaling System (PMID:11739493)
- peripheral blood monocytes treated for 5–8 days with GM-CSF (i.e. mature Mphi) acquired the capacity to assemble CD9, alpha3-beta1 integrin and the tyrosine phosphatase SHP-1 with their CD46 (PMID:11858824)
- The findings reported here strongly suggest that pilus binding to CD46 is not a simple static process. Rather, they support a model in which pilus interaction with CD46 promotes signaling cascades important for Neisseria infectivity. (PMID:11901164)
- Production and characterization of a pig line transgenic for human membrane cofactor protein. (PMID:11983016)
- required for HHV-6A induced fusion from without (PMID:12050388)
- For the classical pathway, MCP is the cofactor for C4b cleavage (and factor H for C3b cleavage); however, if the alternative pathway mediates C3b deposition, then MCP’s cofactor activity is sufficient to restrict complement activation. (PMID:12055245)
- CD46 plays a role in regulating T cell-induced inflammatory reaction and in fine-tuning the cellular immune response by bridging innate and acquired immunity. (PMID:12055630)
- CD46 isoforms function as receptors for human herpesvirus 6 and measles virus (PMID:12171934)
- Co-engagement of CD3 and the complement regulator CD46 in the presence of IL-2 induces a Tr1-specific cytokine phenotype in human CD4+ T cells (PMID:12540904)
- Human herpesvirus 6 variant A glycoprotein H-glycoprotein L-glycoprotein Q complex is a viral ligand for human CD46 (PMID:12663806)
- CD46 has a role as a receptor for fusion and entry of human herpesvirus 6 into target cells (PMID:12724329)
- role in meningococcal disease; results suggest that CD46 facilitates pilus-dependent interactions at the epithelial mucosa (PMID:12869763)
- Adenovirus type 11 uses CD46 as a cellular receptor. (PMID:12915534)
- elucidation of two pathways for CD46 internalization, which are regulated by the valence of cross-linking of CD46 and which utilize either clathrin-coated pits or pseudopodial extension (PMID:12958316)
- Mutations predispose to development of familial hemolytic uremic syndrome. (PMID:14566051)
- Data show that CD46 affords protection from antibody-mediated rejection when mouse anti-pig serum was administered to scid mice bearing grafts from either CD46 transgenic or normal pigs. (PMID:14708531)
- CD46 is localized to the plasma membrane and may have a role in the development of breast cancer epithelial cells (PMID:14712499)
- Highly efficient CD46 function, controlling both classical and alternative pathway complement activation, which suggests it might be the complement regulator of choice to protect kidney xenografts from pig to papio. (PMID:14962279)
- In pigs transgenic for human MCP, the transgene is expressed at similar levels to that in human embryonic neural tissue but at an insufficient level to prevent activation of the complement cascade. (PMID:14962294)
- serves as an attachment receptor for adenovirus-37 (PMID:15047806)
- all of the major splice forms of CD46 are predominant and functional binding sites of species B Adenovirus 3 on CD46-expressing rodent and human cells but may not be the sole receptor of species B Ads on human cells (PMID:15078926)
- Review discussing role of CD46 mutations in predisposition to hemolytic uremic syndrome. (PMID:15121049)
- Significant difference in intensity of the staining of CD55 and CD46 among cells in various layers of normal esophageal mucosa and esophageal carcinoma cells, but not in the staining of CD59. (PMID:15151618)
- CD46 costimulation promotes a Th1-biased response in human CD4+ T lymphocytes. CD46 enhanced TCR/CD3-induced tyrosine phosphorylation of CD3zeta and ZAP-70. (PMID:15307176)
- functional activity of CD46 is not restricted to the tumor cell membranes but can be liberated in vesicles and by a metalloproteinase. (PMID:15307194)
- binding site with measles virus hemagglutinin: attachment sites for MV receptors SLAM and CD46 overlap on the globular head (PMID:15308701)
- Expression of CD46 was not downregulated by the infection of measles virus strain S191 both on mRNA level and cellular surface protein level. (PMID:15336534)
- High levels of CD46 is associated with breast cancer (PMID:15378282)
- Does not provide additional bbenefit in preventing graft rejection in transgenic pig-baboon heart transplantation. (PMID:15385816)
- there are naturally occurring susceptibility factors in CFH and MCP for the development of atypical haemolytic-uraemic syndrome (PMID:15784724)
- In transgenic pigs, has no effect on endogenous retrovirus. (PMID:15808690)
- co-purification of sCD46 and HHV-6 DNA from multiple sclerosis sera indicates that HHV-6 is tightly connected to its receptor, CD46, in the serum of multiple sclerosis patients (PMID:15845255)
- data support the notion that pilus-mediated gonococcal infection of epithelial cells can occur in a CD46-independent manner, thus questioning the function of CD46 as an essential pilus receptor for pathogenic neisseriae (PMID:15845515)
- native conformation of the CCP2 domain is crucial for adenovirus serotype 35 binding and substitution of amino acids at positions 130 to 135 or 152 to 156 completely abolishes the receptor function of CD46 (PMID:15919905)
- CD46 has a role in tailoring innate immune recognition of apoptotic and necrotic cells (PMID:16087667)
- The combination of homozygosity for both IL1B-511*1 and CD46H*2 alleles is a high risk factor for recurrent pregnancy loss. (PMID:16253969)
- CD46 is a major cellular receptor on A549 cells for all species B adenoviruses except types 3 and 7. (PMID:16254377)
- Mutations in the complement regulators factor H, membrane cofactor protein (MCP), and factor I are associated with atypical hemolytic uremic syndrome. (PMID:16386793)
- the N481Y substitution in the measles virus haemagglutinin allowed it to utilize CD46 as an alternative receptor, but its ability to use CD46 was rather low in CD46+ SLAM- cell lines (PMID:16690929)
- ADAM10-mediated release of CD46 from apoptotic vesicles may represent a form of strategy to allow restricted complement activation to deal with modified self (PMID:16735514)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Cd46 | ENSMUSG00000016493 |
| rattus_norvegicus | Cd46l1 | ENSRNOG00000026207 |
Paralogs (39): CFH (ENSG00000000971), SELE (ENSG00000007908), C8B (ENSG00000021852), C6 (ENSG00000039537), SEZ6 (ENSG00000063015), CFHR2 (ENSG00000080910), APOH (ENSG00000091583), SEZ6L (ENSG00000100095), SUSD6 (ENSG00000100647), SRPX (ENSG00000101955), SRPX2 (ENSG00000102359), C7 (ENSG00000112936), C9 (ENSG00000113600), PAPPA2 (ENSG00000116183), CFHR3 (ENSG00000116785), CR2 (ENSG00000117322), CSMD2 (ENSG00000121904), C4BPA (ENSG00000123838), C4BPB (ENSG00000123843), CFHR4 (ENSG00000134365), CFHR5 (ENSG00000134389), F13B (ENSG00000143278), SUSD4 (ENSG00000143502), C8A (ENSG00000157131), SUSD3 (ENSG00000157303), CSMD3 (ENSG00000164796), SVEP1 (ENSG00000165124), C2 (ENSG00000166278), SELP (ENSG00000174175), SEZ6L2 (ENSG00000174938), PRF1 (ENSG00000180644), PAPPA (ENSG00000182752), CSMD1 (ENSG00000183117), SELL (ENSG00000188404), CD55 (ENSG00000196352), CR1L (ENSG00000197721), CR1 (ENSG00000203710), CFB (ENSG00000243649), CFHR1 (ENSG00000244414)
Protein
Protein identifiers
Membrane cofactor protein — P15529 (reviewed: P15529)
Alternative names: TLX, Trophoblast leukocyte common antigen
All UniProt accessions (8): A0A8Q3WKR0, A0A8Q3WKR4, A0A8Q3WKS6, A0A8Q3WKW1, A0A8Q3WLA6, A0A8Q3WLU6, P15529, R4GN18
UniProt curated annotations — full annotation on UniProt →
Function. Acts as a cofactor for complement factor I, a serine protease which protects autologous cells against complement-mediated injury by cleaving C3b and C4b deposited on host tissue. May be involved in the fusion of the spermatozoa with the oocyte during fertilization. Also acts as a costimulatory factor for T-cells which induces the differentiation of CD4+ into T-regulatory 1 cells. T-regulatory 1 cells suppress immune responses by secreting interleukin-10, and therefore are thought to prevent autoimmunity. (Microbial infection) A number of viral and bacterial pathogens seem to bind MCP in order to exploit its immune regulation property and directly induce an immunosuppressive phenotype in T-cells. (Microbial infection) Acts as a receptor for Adenovirus subgroup B2 and Ad3. (Microbial infection) Acts as a receptor for cultured Measles virus. (Microbial infection) Acts as a receptor for Herpesvirus 6/HHV-6. (Microbial infection) May act as a receptor for pathogenic bacteria Neisseria and Streptococcus pyogenes.
Subunit / interactions. Interacts with C3b. Interacts with C4b. Interacts with moesin/MSN. (Microbial infection) Interacts (via N-terminus) with measles virus H protein; this interaction allows attachment and viral entry of vaccine and laboratory-adapted strains. (Microbial infection) Interacts with human herpesvirus 6 GH protein. (Microbial infection) Interacts with human adenovirus B/D fiber protein. (Microbial infection) Binds to Streptococcus pyogenes M protein and to type IV pili from Neisseria.
Subcellular location. Cytoplasmic vesicle. Secretory vesicle. Acrosome inner membrane.
Tissue specificity. Expressed by all cells except erythrocytes.
Post-translational modifications. N-glycosylated on Asn-83; Asn-114 and Asn-273 in most tissues, but probably less N-glycosylated in testis. N-glycosylation on Asn-114 and Asn-273 is required for cytoprotective function. N-glycosylation on Asn-114 is required for Measles virus binding. N-glycosylation on Asn-273 is required for Neisseria binding. N-glycosylation is not required for human adenovirus binding. Extensively O-glycosylated in the Ser/Thr-rich domain. O-glycosylation is required for Neisseria binding but not for Measles virus or human adenovirus binding. In epithelial cells, isoforms B/D/F/H/J/L/3 are phosphorylated by YES1 in response to infection by Neisseria gonorrhoeae; which promotes infectivity. In T-cells, these isoforms may be phosphorylated by LCK.
Disease relevance. Hemolytic uremic syndrome, atypical, 2 (AHUS2) [MIM:612922] An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Disease susceptibility is associated with variants affecting the gene represented in this entry. Other genes may play a role in modifying the phenotype. Patients with CD46 mutations seem to have an overall better prognosis compared to patients carrying CFH mutations.
Domain organisation. Sushi domains 1 and 2 are required for interaction with human adenovirus B PIV/FIBER protein and with Measles virus H protein. Sushi domains 2 and 3 are required for Herpesvirus 6 binding. Sushi domain 3 is required for Neisseria binding. Sushi domains 3 and 4 are required for interaction with Streptococcus pyogenes M protein and are the most important for interaction with C3b and C4b.
Isoforms (16)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P15529-1 | A, no del, ABC1 | yes |
| P15529-2 | B, del 13, ABC2 | |
| P15529-11 | C, del 7, BC1 | |
| P15529-3 | D, del 7-13, BC2 | |
| P15529-12 | E, del 7-8, C1 | |
| P15529-4 | F, del 7-8-13, C2 | |
| P15529-13 | G, del 9 | |
| P15529-5 | H, del 9-13 | |
| P15529-14 | I, del 7-9 | |
| P15529-6 | J, del 7-9-13 | |
| P15529-15 | K, del 7-8-9 | |
| P15529-7 | L, del 7-8-9-13 | |
| P15529-8 | M, del 7-12a-13 | |
| P15529-9 | N, del 7-8-12-13 | |
| P15529-10 | 2 | |
| P15529-16 | 3 |
RefSeq proteins (12): NP_002380, NP_722548, NP_758860, NP_758861, NP_758862, NP_758863, NP_758865, NP_758866, NP_758867, NP_758868, NP_758869, NP_758871 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000436 | Sushi_SCR_CCP_dom | Domain |
| IPR017341 | CD46 | Family |
| IPR035976 | Sushi/SCR/CCP_sf | Homologous_superfamily |
| IPR051277 | SEZ6_CSMD_C4BPB_Regulators | Family |
Pfam: PF00084
UniProt features (107 total): strand 27, glycosylation site 21, sequence variant 13, splice variant 11, disulfide bond 8, modified residue 7, domain 4, sequence conflict 4, mutagenesis site 3, topological domain 2, helix 2, signal peptide 1, chain 1, compositionally biased region 1, transmembrane region 1, region of interest 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5FO8 | X-RAY DIFFRACTION | 2.4 |
| 3O8E | X-RAY DIFFRACTION | 2.84 |
| 2O39 | X-RAY DIFFRACTION | 2.85 |
| 1CKL | X-RAY DIFFRACTION | 3.1 |
| 3INB | X-RAY DIFFRACTION | 3.1 |
| 8QK3 | ELECTRON MICROSCOPY | 3.2 |
| 3L89 | X-RAY DIFFRACTION | 3.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P15529-F1 | 82.38 | 0.66 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (7): 384, 369, 354, 370, 355, 340, 321
Disulfide bonds (8): 35–80, 64–94, 99–141, 127–157, 162–210, 191–223, 228–270, 256–283
Glycosylation sites (21): 83, 114, 163, 273, 290, 291, 292, 298, 300, 302, 303, 304, 305, 306, 307, 309, 312, 313, 315, 320 …
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 83 | no effect on cytoprotective function. no effect on neisseria binding. no effect on measles virus binding. |
| 114 | strongly decreases cytoprotective function. decreases neisseria binding. abolishes measles virus binding. |
| 273 | strongly decreases cytoprotective function. abolishes neisseria binding. no effect on measles virus binding. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-977606 | Regulation of Complement cascade |
| R-HSA-166658 | Complement cascade |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
MSigDB gene sets: 324 (showing top):
GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_SINGLE_FERTILIZATION, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, LEE_NEURAL_CREST_STEM_CELL_DN, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_NEGATIVE_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, GOBP_POSITIVE_REGULATION_OF_HEMOPOIESIS, GOCC_SECRETORY_GRANULE, GOBP_T_CELL_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE, GOBP_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, GOBP_NEGATIVE_REGULATION_OF_LEUKOCYTE_MEDIATED_IMMUNITY, CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN, GOCC_CELL_SURFACE, THEILGAARD_NEUTROPHIL_AT_SKIN_WOUND_DN, GOBP_POSITIVE_REGULATION_OF_CYTOKINE_PRODUCTION
GO Biological Process (18): adaptive immune response (GO:0002250), T cell mediated immunity (GO:0002456), complement activation, classical pathway (GO:0006958), single fertilization (GO:0007338), regulation of Notch signaling pathway (GO:0008593), positive regulation of gene expression (GO:0010628), negative regulation of gene expression (GO:0010629), positive regulation of interleukin-10 production (GO:0032733), obsolete sequestering of extracellular ligand from receptor (GO:0035581), positive regulation of T cell proliferation (GO:0042102), positive regulation of memory T cell differentiation (GO:0043382), innate immune response (GO:0045087), positive regulation of regulatory T cell differentiation (GO:0045591), negative regulation of complement activation, classical pathway (GO:0045959), positive regulation of transforming growth factor beta production (GO:0071636), immune system process (GO:0002376), symbiont entry into host cell (GO:0046718), regulation of immune response (GO:0050776)
GO Molecular Function (4): virus receptor activity (GO:0001618), signaling receptor activity (GO:0038023), cadherin binding (GO:0045296), protein binding (GO:0005515)
GO Cellular Component (8): inner acrosomal membrane (GO:0002079), obsolete extracellular space (GO:0005615), plasma membrane (GO:0005886), focal adhesion (GO:0005925), cell surface (GO:0009986), extracellular exosome (GO:0070062), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Complement cascade | 1 |
| Innate Immune System | 1 |
| Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| immune response | 3 |
| gene expression | 2 |
| regulation of gene expression | 2 |
| positive regulation of cytokine production | 2 |
| positive regulation of T cell differentiation | 2 |
| cellular anatomical structure | 2 |
| lymphocyte mediated immunity | 1 |
| adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | 1 |
| humoral immune response mediated by circulating immunoglobulin | 1 |
| complement activation | 1 |
| fertilization | 1 |
| Notch signaling pathway | 1 |
| regulation of signal transduction | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| negative regulation of macromolecule biosynthetic process | 1 |
| interleukin-10 production | 1 |
| regulation of interleukin-10 production | 1 |
| T cell proliferation | 1 |
| regulation of T cell proliferation | 1 |
| positive regulation of lymphocyte proliferation | 1 |
| positive regulation of T cell activation | 1 |
| positive regulation of immune effector process | 1 |
| memory T cell differentiation | 1 |
| regulation of memory T cell differentiation | 1 |
| positive regulation of immune response | 1 |
| defense response to symbiont | 1 |
| regulatory T cell differentiation | 1 |
| regulation of regulatory T cell differentiation | 1 |
| negative regulation of humoral immune response mediated by circulating immunoglobulin | 1 |
| complement activation, classical pathway | 1 |
| regulation of complement activation, classical pathway | 1 |
| negative regulation of complement activation | 1 |
| transforming growth factor beta production | 1 |
| regulation of transforming growth factor beta production | 1 |
| biological_process | 1 |
| viral life cycle | 1 |
| symbiont entry into host | 1 |
| regulation of immune system process | 1 |
| regulation of response to stimulus | 1 |
| symbiont entry into host cell | 1 |
Protein interactions and networks
STRING
1587 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CD46 | C3 | P01024 | 999 |
| CD46 | C4A | P01028 | 996 |
| CD46 | MYBPH | Q13203 | 993 |
| CD46 | SLAMF1 | Q13291 | 966 |
| CD46 | CD59 | P13987 | 965 |
| CD46 | MYOM2 | P54296 | 948 |
| CD46 | CFI | P05156 | 923 |
| CD46 | GOPC | Q9HD26 | 890 |
| CD46 | CXADR | P78310 | 857 |
| CD46 | MSN | P26038 | 816 |
| CD46 | THBD | P07204 | 808 |
| CD46 | NECTIN4 | Q96NY8 | 797 |
| CD46 | CD55 | P08174 | 786 |
| CD46 | DSG2 | Q14126 | 766 |
| CD46 | DGKE | P52429 | 764 |
IntAct
145 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| JAG1 | CD46 | psi-mi:“MI:0407”(direct interaction) | 0.730 |
| CD46 | JAG1 | psi-mi:“MI:0407”(direct interaction) | 0.730 |
| JAG1 | CD46 | psi-mi:“MI:0403”(colocalization) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| C3 | CD46 | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| CD81 | C2orf72 | psi-mi:“MI:0914”(association) | 0.530 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| AP3D1 | psi-mi:“MI:0914”(association) | 0.460 | |
| H | CD46 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | C3 | psi-mi:“MI:0570”(protein cleavage) | 0.440 |
| CFI | C3 | psi-mi:“MI:0570”(protein cleavage) | 0.440 |
| CD46 | MAST2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | ARHGEF12 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | PDZK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | GRID2IP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | SCRIB | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | SNTB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | PTPN3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | MAST1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SCRIB | CD46 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | TAMALIN | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PDZD7 | CD46 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ARHGEF11 | CD46 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CD46 | SYNJ2BP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (48): CD46 (Affinity Capture-MS), CD46 (Affinity Capture-MS), CD46 (Affinity Capture-MS), CD46 (Proximity Label-MS), CD46 (Affinity Capture-MS), CD46 (Two-hybrid), POU4F2 (Two-hybrid), MGAT5B (Two-hybrid), GPR37L1 (Two-hybrid), AGR3 (Two-hybrid), ANKRD46 (Two-hybrid), CD46 (Affinity Capture-Western), CD46 (Affinity Capture-Western), CD9 (Affinity Capture-Western), CD151 (Affinity Capture-Western)
ESM2 similar proteins: O02839, O08569, O19124, O62685, O62837, O88174, P02749, P04003, P05160, P08607, P14151, P15529, P16109, P17690, P19070, P20023, P26644, P27113, P30836, P42201, P49457, P70105, P79138, P98107, P98109, P98131, Q01102, Q03472, Q07968, Q28065, Q28768, Q2VPA4, Q5R4D0, Q60401, Q60736, Q61475, Q61476, Q63135, Q63514, Q64735
Diamond homologs: A0A182C2Z2, A0JNA2, B3EX01, E7FEC4, O08569, O19124, O57254, O62685, O62837, O88174, P08174, P0DTN2, P15529, P21115, P24083, P24084, P36980, P49457, P79138, P81475, Q01227, Q07968, Q28085, Q29RN8, Q4V9Z5, Q53EL9, Q5R4D0, Q5R8M2, Q5VX71, Q60736, Q63515, Q6AX42, Q6P1D5, Q6UXD5, Q7TSK2, Q7Z408, Q8BH32, Q9BYH1, Q9JF44, Q9W332
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| STAT3 | “up-regulates quantity by expression” | CD46 | “transcriptional regulation” |
| SRC | “up-regulates activity” | CD46 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 110 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ras activation upon Ca2+ influx through NMDA receptor | 7 | 58.8× | 2e-09 |
| Unblocking of NMDA receptors, glutamate binding and activation | 5 | 40.0× | 1e-05 |
| Negative regulation of NMDA receptor-mediated neuronal transmission | 5 | 40.0× | 1e-05 |
| Long-term potentiation | 5 | 35.0× | 2e-05 |
| Assembly and cell surface presentation of NMDA receptors | 9 | 33.6× | 9e-10 |
| Neurexins and neuroligins | 10 | 29.0× | 5e-10 |
| Protein-protein interactions at synapses | 6 | 23.4× | 1e-05 |
| RND3 GTPase cycle | 5 | 19.1× | 3e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 11 | 65.2× | 3e-15 |
| protein localization to synapse | 6 | 46.9× | 4e-07 |
| receptor clustering | 7 | 44.6× | 5e-08 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 7 | 35.4× | 2e-07 |
| protein-containing complex assembly | 9 | 10.5× | 2e-05 |
| cell-cell adhesion | 9 | 9.3× | 4e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
579 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 27 |
| Likely pathogenic | 16 |
| Uncertain significance | 311 |
| Likely benign | 101 |
| Benign | 42 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1162901 | NM_172351.3(CD46):c.412del (p.Ile138fs) | Pathogenic |
| 1162902 | NM_172351.3(CD46):c.464dup (p.Ile156fs) | Pathogenic |
| 1163188 | NM_172351.3(CD46):c.286+1G>C | Pathogenic |
| 1371221 | NM_172351.3(CD46):c.393_411del (p.Gly130_Tyr131insTer) | Pathogenic |
| 1385626 | NM_172351.3(CD46):c.857-148dup | Pathogenic |
| 17044 | NM_172351.3(CD46):c.800_801del (p.Thr267fs) | Pathogenic |
| 17047 | NM_172351.3(CD46):c.98-1G>C | Pathogenic |
| 2075354 | NM_172351.3(CD46):c.408del (p.Glu137fs) | Pathogenic |
| 2577446 | NM_172351.3(CD46):c.907del (p.Arg303fs) | Pathogenic |
| 265981 | NM_172351.3(CD46):c.776del (p.Gly259fs) | Pathogenic |
| 2708593 | NM_172351.3(CD46):c.948T>A (p.Tyr316Ter) | Pathogenic |
| 3236244 | NM_172351.3(CD46):c.126_127del (p.Glu42fs) | Pathogenic |
| 3236246 | NM_172351.3(CD46):c.735del (p.Lys245fs) | Pathogenic |
| 3621483 | NM_172351.3(CD46):c.456dup (p.Lys153Ter) | Pathogenic |
| 369948 | NM_172351.3(CD46):c.542_543del (p.Val180_Phe181insTer) | Pathogenic |
| 3722028 | NM_172351.3(CD46):c.272_276dup (p.Ala93fs) | Pathogenic |
| 3895475 | NM_172351.3(CD46):c.1082+2T>A | Pathogenic |
| 4291174 | NM_172351.3(CD46):c.747_751del (p.Lys249fs) | Pathogenic |
| 4291191 | NM_172351.3(CD46):c.770del (p.Asp257fs) | Pathogenic |
| 4291200 | NM_172351.3(CD46):c.350dup (p.Tyr117Ter) | Pathogenic |
| 4291203 | NM_172351.3(CD46):c.768C>A (p.Cys256Ter) | Pathogenic |
| 4291209 | NM_172351.3(CD46):c.476-2A>G | Pathogenic |
| 4291210 | NM_172351.3(CD46):c.857-2A>G | Pathogenic |
| 4291212 | NM_172351.3(CD46):c.982+2T>C | Pathogenic |
| 4291258 | NM_172351.3(CD46):c.202_203dup (p.Phe69fs) | Pathogenic |
| 635500 | NM_172351.3(CD46):c.404del (p.Gly135fs) | Pathogenic |
| 829863 | NM_172351.3(CD46):c.828G>A (p.Trp276Ter) | Pathogenic |
| 1163186 | NM_172351.3(CD46):c.153del (p.Lys51fs) | Likely pathogenic |
| 1424447 | NM_172351.3(CD46):c.857-174A>C | Likely pathogenic |
| 1500521 | NM_172351.3(CD46):c.389+1G>A | Likely pathogenic |
SpliceAI
2053 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:207757006:A:AG | acceptor_gain | 1.0000 |
| 1:207757007:T:G | acceptor_gain | 1.0000 |
| 1:207757009:CCTA:C | acceptor_loss | 1.0000 |
| 1:207757010:CTAG:C | acceptor_loss | 1.0000 |
| 1:207757012:A:AC | acceptor_loss | 1.0000 |
| 1:207757012:A:AG | acceptor_gain | 1.0000 |
| 1:207757013:G:GT | acceptor_gain | 1.0000 |
| 1:207757013:GAT:G | acceptor_gain | 1.0000 |
| 1:207757013:GATGC:G | acceptor_gain | 1.0000 |
| 1:207757198:TTATA:T | donor_gain | 1.0000 |
| 1:207757199:TATA:T | donor_gain | 1.0000 |
| 1:207757200:ATA:A | donor_gain | 1.0000 |
| 1:207757201:TA:T | donor_gain | 1.0000 |
| 1:207757202:AG:A | donor_loss | 1.0000 |
| 1:207757203:GT:G | donor_loss | 1.0000 |
| 1:207757203:GTAA:G | donor_gain | 1.0000 |
| 1:207757204:T:A | donor_loss | 1.0000 |
| 1:207757207:G:GG | donor_gain | 1.0000 |
| 1:207757538:A:AG | acceptor_gain | 1.0000 |
| 1:207757539:G:GG | acceptor_gain | 1.0000 |
| 1:207757638:GAGGG:G | donor_gain | 1.0000 |
| 1:207757640:GGG:G | donor_gain | 1.0000 |
| 1:207757641:GG:G | donor_gain | 1.0000 |
| 1:207757641:GGG:G | donor_gain | 1.0000 |
| 1:207757642:GG:G | donor_gain | 1.0000 |
| 1:207759637:A:AG | acceptor_gain | 1.0000 |
| 1:207759638:G:GG | acceptor_gain | 1.0000 |
| 1:207759638:GTT:G | acceptor_gain | 1.0000 |
| 1:207759725:G:GG | donor_gain | 1.0000 |
| 1:207761240:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
2449 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:207757174:G:C | W86C | 1.000 |
| 1:207757174:G:T | W86C | 1.000 |
| 1:207761421:G:C | W216C | 1.000 |
| 1:207761421:G:T | W216C | 1.000 |
| 1:207767167:G:C | W276C | 1.000 |
| 1:207767167:G:T | W276C | 1.000 |
| 1:207761344:T:A | C191S | 0.999 |
| 1:207761345:G:A | C191Y | 0.999 |
| 1:207761345:G:C | C191S | 0.999 |
| 1:207761419:T:A | W216R | 0.999 |
| 1:207761419:T:C | W216R | 0.999 |
| 1:207761440:T:A | C223S | 0.999 |
| 1:207761441:G:C | C223S | 0.999 |
| 1:207767021:T:A | C228S | 0.999 |
| 1:207767022:G:C | C228S | 0.999 |
| 1:207767105:T:A | C256S | 0.999 |
| 1:207767106:G:C | C256S | 0.999 |
| 1:207767147:T:A | C270S | 0.999 |
| 1:207767148:G:A | C270Y | 0.999 |
| 1:207767148:G:C | C270S | 0.999 |
| 1:207767165:T:A | W276R | 0.999 |
| 1:207767165:T:C | W276R | 0.999 |
| 1:207767186:T:A | C283S | 0.999 |
| 1:207767187:G:C | C283S | 0.999 |
| 1:207759699:G:C | W150C | 0.998 |
| 1:207759699:G:T | W150C | 0.998 |
| 1:207759718:T:A | C157S | 0.998 |
| 1:207759719:G:C | C157S | 0.998 |
| 1:207761257:T:A | C162S | 0.998 |
| 1:207761258:G:C | C162S | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000195196 (1:207770848 T>C), RS1000366003 (1:207789342 T>C), RS1000445683 (1:207784740 T>G), RS1000453575 (1:207784514 C>G), RS1000488532 (1:207756490 T>G), RS1000605266 (1:207791525 G>A), RS1000655803 (1:207778007 T>C), RS1000772099 (1:207752383 C>A,T), RS1000831596 (1:207759266 A>C), RS1000882184 (1:207758750 A>G), RS1000932953 (1:207768948 T>C), RS1001073144 (1:207781784 G>A,T), RS1001097524 (1:207782175 C>G), RS1001175481 (1:207790005 T>C), RS1001197951 (1:207782316 A>C,G)
Disease associations
OMIM: gene MIM:120920 | disease phenotypes: MIM:612922, MIM:612954
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| atypical hemolytic-uremic syndrome with MCP/CD46 anomaly | Definitive | Semidominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| atypical hemolytic-uremic syndrome | Definitive | SD |
Mondo (6): atypical hemolytic-uremic syndrome with MCP/CD46 anomaly (MONDO:0013040), atypical hemolytic-uremic syndrome (MONDO:0016244), thrombotic microangiopathy (MONDO:0019737), kidney disorder (MONDO:0005240), myofibrillar myopathy 6 (MONDO:0013061), familial hemolytic anemia (MONDO:0003689)
Orphanet (4): Atypical hemolytic uremic syndrome (Orphanet:2134), Thrombotic microangiopathy (Orphanet:93573), BAG3-related myofibrillar myopathy (Orphanet:199340), OBSOLETE: Atypical hemolytic uremic syndrome with MCP/CD46 anomaly (Orphanet:93576)
HPO phenotypes
44 total (30 of 44 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000093 | Proteinuria |
| HP:0000790 | Hematuria |
| HP:0000822 | Hypertension |
| HP:0001058 | Poor wound healing |
| HP:0001342 | Cerebral hemorrhage |
| HP:0001873 | Thrombocytopenia |
| HP:0001878 | Hemolytic anemia |
| HP:0001903 | Anemia |
| HP:0001919 | Acute kidney injury |
| HP:0001937 | Microangiopathic hemolytic anemia |
| HP:0002013 | Vomiting |
| HP:0002018 | Nausea |
| HP:0002027 | Abdominal pain |
| HP:0002202 | Pleural effusion |
| HP:0002315 | Headache |
| HP:0002615 | Hypotension |
| HP:0002910 | Elevated circulating hepatic transaminase concentration |
| HP:0003138 | Increased blood urea nitrogen |
| HP:0003259 | Elevated circulating creatinine concentration |
| HP:0003418 | Back pain |
| HP:0003621 | Juvenile onset |
| HP:0003641 | Hemoglobinuria |
| HP:0004324 | Increased body weight |
| HP:0005421 | Decreased circulating complement C3 concentration |
| HP:0005521 | Disseminated intravascular coagulation |
| HP:0005575 | Hemolytic-uremic syndrome |
| HP:0007430 | Generalized edema |
| HP:0008071 | Maternal hypertension |
GWAS associations
50 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000381_2 | Biomedical quantitative traits | 3.000000e-09 |
| GCST001762_651 | Obesity-related traits | 9.000000e-06 |
| GCST001814_11 | Age-related macular degeneration | 5.000000e-06 |
| GCST001814_23 | Age-related macular degeneration | 5.000000e-06 |
| GCST001969_6 | Heart rate | 4.000000e-26 |
| GCST002539_34 | Schizophrenia | 4.000000e-08 |
| GCST002672_7 | Febrile seizures | 2.000000e-09 |
| GCST002674_2 | Febrile seizures (MMR vaccine-related) | 1.000000e-10 |
| GCST003818_63 | Resting heart rate | 5.000000e-31 |
| GCST004269_2 | Immune response to measles vaccine (measles-specific neutralising antibody titre) | 3.000000e-09 |
| GCST004269_4 | Immune response to measles vaccine (measles-specific neutralising antibody titre) | 5.000000e-09 |
| GCST005789_4 | Resting heart rate | 3.000000e-10 |
| GCST006416_5 | Chronic central serous retinopathy | 7.000000e-07 |
| GCST006803_51 | Schizophrenia | 3.000000e-07 |
| GCST007095_101 | Systolic blood pressure | 3.000000e-08 |
| GCST007095_102 | Systolic blood pressure | 3.000000e-07 |
| GCST007096_118 | Pulse pressure | 2.000000e-09 |
| GCST007097_78 | Pulse pressure | 6.000000e-08 |
| GCST007097_79 | Pulse pressure | 3.000000e-07 |
| GCST007099_162 | Systolic blood pressure | 2.000000e-07 |
| GCST007267_277 | Systolic blood pressure | 9.000000e-09 |
| GCST007630_4 | Drug experimentation measurement | 2.000000e-06 |
| GCST010002_375 | Refractive error | 2.000000e-54 |
| GCST010723_1 | Early age-related macular degeneration | 5.000000e-08 |
| GCST010796_1351 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
| GCST010796_1352 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-09 |
| GCST010796_1353 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-11 |
| GCST010796_1480 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-10 |
| GCST010796_1481 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-10 |
| GCST010796_1482 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004530 | triglyceride measurement |
| EFO:0006519 | MMR-related febrile seizures |
| EFO:0004645 | response to vaccine |
| EFO:0009363 | chronic central serous retinopathy |
| EFO:0006335 | systolic blood pressure |
| EFO:0005763 | pulse pressure measurement |
| EFO:0007010 | drug use measurement |
| EFO:0004327 | electrocardiography |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000745 | Anemia, Hemolytic, Congenital | C15.378.050.141.150; C16.320.070 |
| D065766 | Atypical Hemolytic Uremic Syndrome | C12.050.351.968.419.936.463.500; C12.200.777.419.936.463.500; C12.950.419.936.463.500; C15.378.050.141.610.500; C15.378.140.855.925.500.500; C15.378.243.937.925.500.500 |
| D007674 | Kidney Diseases | C12.050.351.968.419; C12.200.777.419; C12.950.419 |
| D057049 | Thrombotic Microangiopathies | C15.378.140.855.925; C15.378.243.937.925 |
| C567843 | Myopathy, Myofibrillar, Bag3-Related (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
51 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression | 5 |
| sodium arsenite | decreases expression, increases abundance | 2 |
| aristolochic acid I | decreases expression | 1 |
| 4-hydroxy-7-oxo-5-heptenoic acid lactone | increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| titanium dioxide | increases expression | 1 |
| trichostatin A | affects expression, decreases reaction | 1 |
| beta-lapachone | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| sulindac sulfide | decreases expression | 1 |
| cadmium acetate | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| seocalcitol | increases expression | 1 |
| abiraterone | decreases response to substance, increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| enzalutamide | increases expression | 1 |
| 3’,4’-dimethoxy-alpha-naphthoflavone | decreases reaction, increases activity, increases expression | 1 |
| Resveratrol | increases expression, affects cotreatment | 1 |
| Vorinostat | decreases expression | 1 |
| Allergens | decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
Cellosaurus cell lines
17 cell lines: 15 cancer cell line, 1 transformed cell line, 1 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B4FI | MODE-K.CD46 | Transformed cell line | Female |
| CVCL_D1VM | Abcam A-549 CD46 KO | Cancer cell line | Male |
| CVCL_D2A7 | Abcam HCT 116 CD46 KO | Cancer cell line | Male |
| CVCL_D2N7 | Abcam THP-1 CD46 KO | Cancer cell line | Male |
| CVCL_D7M5 | Ubigene A-549 CD46 KO | Cancer cell line | Male |
| CVCL_E6PM | Genomeditech CHO-K1 H_CD46 | Spontaneously immortalized cell line | Female |
| CVCL_SH73 | HAP1 CD46 (-) 1 | Cancer cell line | Male |
| CVCL_SH74 | HAP1 CD46 (-) 2 | Cancer cell line | Male |
| CVCL_SH75 | HAP1 CD46 (-) 3 | Cancer cell line | Male |
| CVCL_SH76 | HAP1 CD46 (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02574403 | PHASE4 | COMPLETED | Study Assessing an Algorithm-based Strategy of Eculizumab Discontinuation in Children and Adults With aHUS |
| NCT07308574 | PHASE4 | RECRUITING | Post-Marketing Clinical Study of Ravulizumab in Participants With Clinical aHUS |
| NCT00067990 | PHASE4 | COMPLETED | Angiotensin II Blockade for Chronic Allograft Nephropathy |
| NCT00117078 | PHASE4 | COMPLETED | Aranesp® Monthly Preference Study - 2 |
| NCT00117130 | PHASE4 | COMPLETED | Study to Evaluate Effectiveness of Aranesp® |
| NCT00132431 | PHASE4 | COMPLETED | START: Sensipar Treatment Algorithm to Reach K/DOQI Targets in Chronic Kidney Disease Subjects With Secondary Hyperparathyroidism |
| NCT00140985 | PHASE4 | COMPLETED | Antiproteinuric Efficacy of Losartan Potassium in Patients With Non-Diabetic Proteinuric Renal Diseases (0954-213) |
| NCT00246129 | PHASE4 | COMPLETED | CamTac Trial:Campath-Tacrolimus vs IL2R MoAb/Tacrolimus/MMF in Renal Transplantation |
| NCT00275535 | PHASE4 | COMPLETED | The Comparison of Tacrolimus and Sirolimus Immunosuppression Based Drug Regimens in Kidney Transplant Recipients |
| NCT00282217 | PHASE4 | COMPLETED | Study Evaluating Sirolimus in the Treatment of Kidney Transplant |
| NCT00289614 | PHASE4 | COMPLETED | Patients With Renal Impairment and Diabetes Undergoing Computed Tomography (CT) |
| NCT00290069 | PHASE4 | UNKNOWN | Renal Function Optimization With Mycophenolate Mofetil (MMF) Immunosuppressor Regimes (ALHAMBRA) |
| NCT00338468 | PHASE4 | TERMINATED | A Study to Assess Disability in Anemic Elderly Patients With Kidney Disease Receiving PROCRIT (Epoetin Alfa) |
| NCT00368901 | PHASE4 | COMPLETED | STAAR-2 Clinical Study |
| NCT00369733 | PHASE4 | COMPLETED | STAAR-3 Clinical Study |
| NCT00369772 | PHASE4 | COMPLETED | STAAR-1 Clinical Study |
| NCT00379899 | PHASE4 | COMPLETED | ADVANCE: Study to Evaluate Cinacalcet Plus Low Dose Vitamin D on Vascular Calcification in Subjects With Chronic Kidney Disease Receiving Hemodialysis |
| NCT00443508 | PHASE4 | UNKNOWN | Reduction or Discontinuation of CNI’s With Conversion to Everolimus-Based Immunosuppresion |
| NCT00452478 | PHASE4 | TERMINATED | Conversion From Standard Phosphate Binder Therapy to Fosrenol® (Lanthanum Carbonate) in Chronic Kidney Disease Stage 5 |
| NCT00492518 | PHASE4 | COMPLETED | Acetylcysteine, Theophylline, and a Combination of Both in the Prophylaxis of Contrast-Induced Nephropathy |
| NCT00505102 | PHASE4 | UNKNOWN | Safe Renal Function In Long Term Heart Transplanted Patients |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00688480 | PHASE4 | COMPLETED | Do Xanthine Oxidase Inhibitors Reduce Both Left Ventricular Hypertrophy and Endothelial Dysfunction in Cardiovascular Patients With Renal Dysfunction? |
| NCT00863707 | PHASE4 | COMPLETED | A Study of the Safety and Tolerance of Regadenoson in Subjects With Renal Impairment |
| NCT01101698 | PHASE4 | UNKNOWN | Vitamin K2 and Vessel Calcification in Chronic Kidney Disease Patients |
| NCT01150201 | PHASE4 | COMPLETED | Aliskiren Combined With Losartan in Proteinuric, Non-diabetic Chronic Kidney Disease |
| NCT01155141 | PHASE4 | COMPLETED | Idiopathic Focal Segmental Glomerulosclerosis (FSGS) and Treatment With ACTH |
| NCT01228279 | PHASE4 | COMPLETED | Sympathetic Activity in Patients With End-stage Renal Disease on Peritoneal Dialysis |
| NCT01334333 | PHASE4 | COMPLETED | Comparison of Medication Adherence Between Once and Twice Daily Tacrolimus in Stable Renal Transplant Recipients |
| NCT01437943 | PHASE4 | TERMINATED | Effect of Short Term Aliskiren Treatment in Kidney Transplant Patients |
| NCT01545479 | PHASE4 | COMPLETED | Increased Renal Oxygenation and Angiotensin Converting Enzyme Inhibition |
| NCT01614431 | PHASE4 | COMPLETED | N Acetyl Cysteine for Cystinosis Patients |
| NCT01631149 | PHASE4 | COMPLETED | Effect of Deep BLock on Intraoperative Surgical Conditions |
| NCT01722513 | PHASE4 | UNKNOWN | Efficacy and Safety of Alprostadil Prevent Contrast Induced Nephropathy |
| NCT01985360 | PHASE4 | COMPLETED | ISCHEMIA-Chronic Kidney Disease Trial |
| NCT02311010 | PHASE4 | UNKNOWN | Practical Use of Advagraf de Novo After Kidney Transplantation According to Recipient Genetic Polymorphism |
| NCT02413073 | PHASE4 | COMPLETED | Whole Body Vibration in Kidney Disease |
| NCT02444013 | PHASE4 | UNKNOWN | Folic Acid for Prevention of Contrast Induced Nephropathy |
| NCT02663713 | PHASE4 | COMPLETED | A Randomized, Pharmacodynamic Comparison of Low Dose Ticagrelor to Clopidogrel in Patients With Prior Myocardial Infarction |
| NCT02707809 | PHASE4 | COMPLETED | Effects of Dexmedetomidine on Microcirculation of Kidney Transplant Recipient |
Related Atlas pages
- Associated diseases: atypical hemolytic-uremic syndrome with MCP/CD46 anomaly, atypical hemolytic-uremic syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atypical hemolytic-uremic syndrome, atypical hemolytic-uremic syndrome with MCP/CD46 anomaly, familial hemolytic anemia, kidney disorder, myofibrillar myopathy 6, thrombotic microangiopathy