CD63
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Also known as ME491TSPAN30HOP-26Pltgp40AD1
Summary
CD63 (CD63 molecule, HGNC:1692) is a protein-coding gene on chromosome 12q13.2, encoding CD63 antigen (P08962). Functions as a cell surface receptor for TIMP1 and plays a role in the activation of cellular signaling cascades.
The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. The encoded protein is a cell surface glycoprotein that is known to complex with integrins. It may function as a blood platelet activation marker. Deficiency of this protein is associated with Hermansky-Pudlak syndrome. Also this gene has been associated with tumor progression. Alternative splicing results in multiple transcript variants encoding different protein isoforms.
Source: NCBI Gene 967 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 49 total — 4 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 1
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001780
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1692 |
| Approved symbol | CD63 |
| Name | CD63 molecule |
| Location | 12q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ME491, TSPAN30, HOP-26, Pltgp40, AD1 |
| Ensembl gene | ENSG00000135404 |
| Ensembl biotype | protein_coding |
| OMIM | 155740 |
| Entrez | 967 |
Gene structure
Transcript identifiers
Ensembl transcripts: 46 — 43 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000257857, ENST00000420846, ENST00000546457, ENST00000546939, ENST00000548117, ENST00000548160, ENST00000548898, ENST00000549117, ENST00000550050, ENST00000550776, ENST00000551173, ENST00000552067, ENST00000552164, ENST00000552692, ENST00000552754, ENST00000555199, ENST00000866659, ENST00000866660, ENST00000866661, ENST00000866662, ENST00000866663, ENST00000866664, ENST00000866665, ENST00000866666, ENST00000866667, ENST00000866668, ENST00000866669, ENST00000866670, ENST00000866671, ENST00000866672, ENST00000866673, ENST00000866674, ENST00000866675, ENST00000922866, ENST00000922867, ENST00000922868, ENST00000922869, ENST00000922870, ENST00000922871, ENST00000922872, ENST00000922873, ENST00000922874, ENST00000922875, ENST00000922876, ENST00000922877, ENST00000944923
RefSeq mRNA: 16 — MANE Select: NM_001780
NM_001257389, NM_001257390, NM_001257391, NM_001257392, NM_001257400, NM_001257401, NM_001267698, NM_001413281, NM_001413282, NM_001413283, NM_001413284, NM_001413285, NM_001413286, NM_001413287, NM_001413288, NM_001780
CCDS: CCDS58242, CCDS58243, CCDS8890
Canonical transcript exons
ENST00000257857 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000920077 | 55728276 | 55728352 |
| ENSE00001517772 | 55728953 | 55729009 |
| ENSE00002325261 | 55725323 | 55725626 |
| ENSE00003477196 | 55726121 | 55726261 |
| ENSE00003489755 | 55725813 | 55725896 |
| ENSE00003567727 | 55727151 | 55727339 |
| ENSE00003590609 | 55726700 | 55726795 |
| ENSE00003691001 | 55726890 | 55726964 |
Expression profiles
Bgee: expression breadth ubiquitous, 305 present calls, max score 99.92.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 409.9608 / max 2987.6829, expressed in 1828 samples.
FANTOM5 promoters (13 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 131431 | 365.3902 | 1828 |
| 131430 | 29.8247 | 1770 |
| 131424 | 7.0541 | 1622 |
| 131427 | 2.8257 | 1088 |
| 131432 | 1.8826 | 1123 |
| 131429 | 0.8830 | 485 |
| 131428 | 0.5820 | 296 |
| 131426 | 0.3501 | 178 |
| 131415 | 0.3042 | 77 |
| 131422 | 0.2717 | 98 |
Top tissues by expression
305 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 99.92 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 99.85 | gold quality |
| adult organism | UBERON:0007023 | 99.79 | gold quality |
| type B pancreatic cell | CL:0000169 | 99.78 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.78 | gold quality |
| lower lobe of lung | UBERON:0008949 | 99.77 | gold quality |
| left adrenal gland | UBERON:0001234 | 99.74 | gold quality |
| olfactory bulb | UBERON:0002264 | 99.74 | gold quality |
| upper lobe of lung | UBERON:0008948 | 99.74 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.73 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.73 | gold quality |
| decidua | UBERON:0002450 | 99.73 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 99.73 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.72 | gold quality |
| ascending aorta | UBERON:0001496 | 99.72 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 99.72 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.71 | gold quality |
| adrenal cortex | UBERON:0001235 | 99.71 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.71 | gold quality |
| corpus epididymis | UBERON:0004359 | 99.71 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.71 | gold quality |
| gall bladder | UBERON:0002110 | 99.70 | gold quality |
| adrenal gland | UBERON:0002369 | 99.70 | gold quality |
| myometrium | UBERON:0001296 | 99.69 | gold quality |
| coronary artery | UBERON:0001621 | 99.69 | gold quality |
| left coronary artery | UBERON:0001626 | 99.69 | gold quality |
| synovial joint | UBERON:0002217 | 99.69 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 99.69 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.69 | gold quality |
| endocervix | UBERON:0000458 | 99.68 | gold quality |
Single-cell (SCXA)
Detected in 47 experiment(s), a significant marker in 28.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-23 | yes | 4163.56 |
| E-GEOD-84465 | yes | 3824.37 |
| E-MTAB-8142 | yes | 2911.04 |
| E-HCAD-1 | yes | 2568.79 |
| E-GEOD-139324 | yes | 2403.00 |
| E-MTAB-10042 | yes | 1695.24 |
| E-MTAB-10432 | yes | 1557.93 |
| E-CURD-88 | yes | 1508.06 |
| E-HCAD-5 | yes | 1331.97 |
| E-HCAD-8 | yes | 994.98 |
| E-CURD-77 | yes | 436.86 |
| E-HCAD-4 | yes | 213.11 |
| E-MTAB-8410 | yes | 71.46 |
| E-CURD-122 | yes | 69.33 |
| E-MTAB-10553 | yes | 44.20 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): BCL6, MYC
miRNA regulators (miRDB)
12 targeting CD63, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
| HSA-MIR-3617-5P | 99.75 | 69.41 | 1968 |
| HSA-MIR-641 | 99.75 | 69.35 | 1975 |
| HSA-MIR-361-3P | 99.19 | 66.45 | 1381 |
| HSA-MIR-6894-5P | 98.70 | 63.78 | 809 |
| HSA-MIR-1468-5P | 94.18 | 69.04 | 176 |
Literature-anchored findings (GeneRIF, showing 40)
- Results show that AP-3 is absolutely required for the delivery of CD63 to lysosomes via the trans-Golgi network. (PMID:11907283)
- C-kit is physically associated with transmembrane 4 superfamily proteins CD9, CD63, and CD81, that may negatively modulate c-kit and thus regulate c-kit receptor sensitivity to SLF in hematopoietic progenitors. (PMID:12036870)
- downregulation of CD63 antigen is associated with breast tumor progression (PMID:12579280)
- possible role in HIV-1 infections specific for macrophages (PMID:12610138)
- Post-translational modification of CD63 may be involved in the functional and morphological changes of MHC class II compartments that occur during dendritic cell maturation (PMID:12755696)
- relationships between the expression levels of CD61, CD63, and PAC-1 on the platelet surface and the incidences of acute rejection and tubular necrosis as well as the recovery of graft function after renal transplantation (PMID:12826159)
- Upon platelet interaction with fibrinogen, cholesterol accumulated at the tips of filopodia and at the leading edge of spreading cells; cholesterol-rich raft aggregation was accompanied by concentration of c-Src and CD63 in these cell domains (PMID:12871315)
- The study on CD63 included its chemistry eg. if it had and O-linked carbohydrate that was digested with O-glycanase. (PMID:12974720)
- CD63 serves as an adaptor protein that links its interaction partners to the endocytic machinery of the cell. (PMID:14660791)
- results suggest that CD9, CD63, CD81, and CD82 could play a role in modulating the interactions between immature DCs and their environment, slowing their migratory ability. However, only CD63 would intervene in the internalization of complex antigens (PMID:15130945)
- Constitutive expression of CD63 may indicate that this factor does not play a direct role in thyroid carcinogenesis (PMID:15375577)
- CD63 represents an activation-induced reinforcing element, whose triggering promotes sustained and efficient T cell activation and expansion. (PMID:15528334)
- The linkage of CD63 with PI 4-kinase may result in the recruitment of this signaling enzyme to specific membrane locations in the platelet where it influences phosphoinositide-dependent signaling and platelet spreading. (PMID:15711748)
- This study identifies a trafficking pathway from CD63-positive multivesicular bodies to the bacterial inclusion, a novel interaction that provides essential lipids necessary for maintenance of a productive intracellular infection. (PMID:16410552)
- CD63 is recruited to already-budded Weibel-Palade bodies by an AP-3-dependent route (PMID:16683915)
- CD63-syntenin-1 complex is abundant on the plasma membrane (PMID:16908530)
- CD63 is a cell surface binding partner for TIMP-1, regulating cell survival and polarization via TIMP-1 modulation of tetraspanin/integrin signaling complex. (PMID:16917503)
- Chronic urticaria serum-induced CD63 expression assay performed on atopic whole blood by means of tricolor flow cytometry could be the most useful tool for identification of a subset of patients with autoimmune chronic urticaria. (PMID:16918509)
- In conclusion, using well-defined experimental conditions, the measurement of CD203c up-regulation on basophils in response to specific allergens is as reliable as CD63-BAT for the in vitro diagnosis of patients with IgE-mediated allergy. (PMID:17275019)
- positive correlation between CD63 and erythrocyte sedimentation rate in rheumatoid arthritis (PMID:17279322)
- Results suggest that CD63 can be a biomarker for predicting the prognosis in early stages of lung adenocarcinoma. (PMID:17350713)
- These results suggest that chronic obstructive pulmonary disease patients have different patterns of CD63 expression and polymorphonuclear neutrophils mediator release than healthy individuals. (PMID:17390088)
- Data show that HIV-1 envelope glycoprotein (Env) and core protein (Gag) colocalize strongly with CD63 and CD81 and less strongly with CD9, and suggest that HIV-1 promotes virus assembly and cell-cell transfer by targeting these plasma membrane proteins. (PMID:17522207)
- There is low expression of the proteins and mRNA of ME491/CD63 and integrin alpha5 in ovarian cancer. The lower the pathological differentiation is, the more significant the loss of expression is and the more likely metastasis is. (PMID:17624082)
- PrP(c) at the cell surface of cultured human erythroblasts is rapidly internalized through the endosomal pathway, where it colocalizes with the tetraspanin CD63. (PMID:17827389)
- Data show that an N-terminal deletion mutant of CD63 blocks entry of CXCR4-using, T-cell tropic human immunodeficiency virus type 1 (X4 HIV-1) by suppressing CXCR4 surface expression. (PMID:18182005)
- CD63 plays a role in the regulation of ROMK channels through its association with RPTPalpha, which in turn interacts with and activates Src family PTK, thus reducing ROMK activity. (PMID:18211905)
- Together, our results indicate that at least in tissue culture, CD63 expression is not required for either the production or the infectivity of HIV-1. (PMID:18321974)
- These studies confirm CD63 as a constituent in multivesicular body-to-chlamydial inclusion transport but it is not required for this association. (PMID:18426873)
- Induction of hypercortisolism in healthy volunteers was associated with a trend toward higher expression of glycoprotein 53 on the platelet surface. (PMID:18600034)
- CD63 is involved in granule targeting of neutrophil elastase (PMID:18669870)
- Antigen-induced p38 MAPK phosphorylation in human basophils essentially contributes to CD63 upregulation (PMID:18727065)
- the activation-induced degranulation of Fas ligand has distinct requirements and involves different mechanisms than those of the granule markers CD63 and CD107a/Lamp-1 (PMID:19079288)
- Exotest for CD63+ plasma exosomes had limited sensitivity but the Exotest for detection of caveolin-1+ plasma exosomes showed a higher sensitivity. Caveolin-1+ plasma exosomes were significantly increased with respect to CD63+ exosomes in patients group (PMID:19381331)
- CD9, CD81 and CD63 are negative regulators of HIV-1-induced cell-cell fusion. (PMID:19458002)
- Serum sCD163 is a homogenous protein covering more than 94% of the CD163 ectodomain including the haptoglobin-hemoglobin -binding region. (PMID:19581020)
- Surface expression of the novel CD63 variant is a distinguishing feature of mast cells, which are are stable, multiple-use cells capable of surviving and delivering several consecutive hits (PMID:20337613)
- CD63 expression results from only the anaphylactic degranulation form of histamine release. (PMID:20633031)
- this work provides the first evidence of a TIMP-4/CD63 association in astrocytoma tumor cells (PMID:20693981)
- ameloblastin is expressed in osteoblasts and functions as a promoting factor for osteogenic differentiation via a novel pathway through the interaction between CD63 and integrin beta1 (PMID:21149578)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cd63 | ENSDARG00000025147 |
| mus_musculus | Cd63 | ENSMUSG00000025351 |
| rattus_norvegicus | Cd63 | ENSRNOG00000007650 |
| drosophila_melanogaster | Tsp47F | FBGN0033629 |
| caenorhabditis_elegans | tsp-7 | WBGENE00006633 |
Paralogs (32): TSPAN6 (ENSG00000000003), CD9 (ENSG00000010278), TSPAN9 (ENSG00000011105), TSPAN17 (ENSG00000048140), TSPAN32 (ENSG00000064201), CD82 (ENSG00000085117), TSPAN15 (ENSG00000099282), CD37 (ENSG00000104894), UPK1A (ENSG00000105668), TSPAN12 (ENSG00000106025), TSPAN13 (ENSG00000106537), TSPAN14 (ENSG00000108219), CD81 (ENSG00000110651), TSPAN11 (ENSG00000110900), PRPH2 (ENSG00000112619), UPK1B (ENSG00000114638), TSPAN1 (ENSG00000117472), TSPAN8 (ENSG00000127324), TSPAN16 (ENSG00000130167), TSPAN2 (ENSG00000134198), TSPAN31 (ENSG00000135452), TSPAN3 (ENSG00000140391), CD53 (ENSG00000143119), ROM1 (ENSG00000149489), TSPAN7 (ENSG00000156298), TSPAN18 (ENSG00000157570), TSPAN33 (ENSG00000158457), TSPAN5 (ENSG00000168785), CD151 (ENSG00000177697), TSPAN10 (ENSG00000182612), TSPAN4 (ENSG00000214063), TSPAN19 (ENSG00000231738)
Protein
Protein identifiers
CD63 antigen — P08962 (reviewed: P08962)
Alternative names: Granulophysin, Lysosomal-associated membrane protein 3, Lysosome integral membrane protein 1, Melanoma-associated antigen ME491, OMA81H, Ocular melanoma-associated antigen, Tetraspanin-30
All UniProt accessions (6): P08962, F8VNT9, F8VV56, F8VWK8, F8VX62, F8W022
UniProt curated annotations — full annotation on UniProt →
Function. Functions as a cell surface receptor for TIMP1 and plays a role in the activation of cellular signaling cascades. Plays a role in the activation of ITGB1 and integrin signaling, leading to the activation of AKT, FAK/PTK2 and MAP kinases. Promotes cell survival, reorganization of the actin cytoskeleton, cell adhesion, spreading and migration, via its role in the activation of AKT and FAK/PTK2. Plays a role in VEGFA signaling via its role in regulating the internalization of KDR/VEGFR2. Plays a role in intracellular vesicular transport processes, and is required for normal trafficking of the PMEL luminal domain that is essential for the development and maturation of melanocytes. Plays a role in the adhesion of leukocytes onto endothelial cells via its role in the regulation of SELP trafficking. May play a role in mast cell degranulation in response to Ms4a2/FceRI stimulation, but not in mast cell degranulation in response to other stimuli.
Subunit / interactions. Interacts with TIMP1 and ITGB1 and recruits TIMP1 to ITGB1. Interacts with CD9. Identified in a complex with CD9 and ITGB3. Interacts with PMEL. Interacts with KDR/VEGFR2; identified in a complex with ITGB1 and KDR/VEGFR2 and is required to recruit KDR to ITGB1 complexes. Interacts with SYT7.
Subcellular location. Cell membrane. Lysosome membrane. Late endosome membrane. Endosome. Multivesicular body. Melanosome. Secreted. Extracellular exosome. Cell surface.
Tissue specificity. Detected in platelets (at protein level). Dysplastic nevi, radial growth phase primary melanomas, hematopoietic cells, tissue macrophages.
Post-translational modifications. Palmitoylated at a low, basal level in unstimulated platelets. The level of palmitoylation increases when platelets are activated by thrombin (in vitro).
Miscellaneous. Lack of expression of CD63 in platelets has been observed in a patient with Hermansky-Pudlak syndrome (HPS). Hermansky-Pudlak syndrome (HPS) is a genetically heterogeneous, rare, autosomal recessive disorder characterized by oculocutaneous albinism, bleeding due to platelet storage pool deficiency, and lysosomal storage defects. This syndrome results from defects of diverse cytoplasmic organelles including melanosomes, platelet dense granules and lysosomes. Ceroid storage in the lungs is associated with pulmonary fibrosis, a common cause of premature death in individuals with HPS. This antigen is associated with early stages of melanoma tumor progression.
Similarity. Belongs to the tetraspanin (TM4SF) family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P08962-1 | 1 | yes |
| P08962-2 | 2 | |
| P08962-3 | 3 |
RefSeq proteins (16): NP_001244318, NP_001244319, NP_001244320, NP_001244321, NP_001244329, NP_001244330, NP_001254627, NP_001400210, NP_001400211, NP_001400212, NP_001400213, NP_001400214, NP_001400215, NP_001400216, NP_001400217, NP_001771* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000301 | Tetraspanin_animals | Family |
| IPR008952 | Tetraspanin_EC2_sf | Homologous_superfamily |
| IPR018499 | Tetraspanin/Peripherin | Family |
| IPR018503 | Tetraspanin_CS | Conserved_site |
| IPR042028 | CD63_LEL | Domain |
Pfam: PF00335
UniProt features (18 total): topological domain 5, transmembrane region 4, glycosylation site 3, splice variant 2, initiator methionine 1, chain 1, short sequence motif 1, sequence conflict 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9HUR | X-RAY DIFFRACTION | 1.65 |
| 9HQ5 | X-RAY DIFFRACTION | 2.6 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P08962-F1 | 90.82 | 0.80 |
Antibody-complex structures (SAbDab): 2 — 9HQ5, 9HUR
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (3): 130, 150, 172
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-109582 | Hemostasis |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
| R-HSA-76005 | Response to elevated platelet cytosolic Ca2+ |
MSigDB gene sets: 313 (showing top):
GOBP_POTASSIUM_ION_TRANSPORT, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_EPITHELIUM_DEVELOPMENT, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_VASCULAR_ENDOTHELIAL_GROWTH_FACTOR_SIGNALING_PATHWAY, GOBP_POSITIVE_REGULATION_OF_ENDOCYTOSIS, GOCC_VACUOLAR_MEMBRANE, GOCC_SECRETORY_GRANULE, MODULE_151, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, MODULE_64, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GOBP_REGULATION_OF_EPITHELIAL_CELL_MIGRATION, GOCC_CELL_SURFACE, MODULE_128
GO Biological Process (16): positive regulation of receptor internalization (GO:0002092), cell-matrix adhesion (GO:0007160), negative regulation of epithelial cell migration (GO:0010633), protein transport (GO:0015031), cell migration (GO:0016477), epithelial cell differentiation (GO:0030855), endosome to melanosome transport (GO:0035646), positive regulation of cell adhesion (GO:0045785), pigment granule maturation (GO:0048757), regulation of vascular endothelial growth factor signaling pathway (GO:1900746), regulation of potassium ion transmembrane transport (GO:1901379), positive regulation of integrin-mediated signaling pathway (GO:2001046), cell differentiation (GO:0030154), pigmentation (GO:0043473), positive regulation of endocytosis (GO:0045807), pigment cell differentiation (GO:0050931)
GO Molecular Function (2): protein-containing complex binding (GO:0044877), protein binding (GO:0005515)
GO Cellular Component (22): obsolete extracellular space (GO:0005615), nucleoplasm (GO:0005654), lysosomal membrane (GO:0005765), plasma membrane (GO:0005886), cell surface (GO:0009986), endosome membrane (GO:0010008), platelet dense granule membrane (GO:0031088), late endosome membrane (GO:0031902), endosome lumen (GO:0031904), multivesicular body membrane (GO:0032585), protein-containing complex (GO:0032991), azurophil granule membrane (GO:0035577), melanosome (GO:0042470), extracellular exosome (GO:0070062), multivesicular body, internal vesicle (GO:0097487), extracellular region (GO:0005576), lysosome (GO:0005764), endosome (GO:0005768), late endosome (GO:0005770), multivesicular body (GO:0005771), membrane (GO:0016020), vesicle (GO:0031982)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Innate Immune System | 1 |
| Immune System | 1 |
| Hemostasis | 1 |
| Platelet activation, signaling and aggregation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| endosome | 3 |
| cell differentiation | 2 |
| binding | 2 |
| secretory granule membrane | 2 |
| late endosome | 2 |
| multivesicular body | 2 |
| regulation of receptor internalization | 1 |
| receptor internalization | 1 |
| positive regulation of receptor-mediated endocytosis | 1 |
| cell-substrate adhesion | 1 |
| epithelial cell migration | 1 |
| regulation of epithelial cell migration | 1 |
| negative regulation of cell migration | 1 |
| negative regulation of multicellular organismal process | 1 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| cell motility | 1 |
| epithelium development | 1 |
| endosome to pigment granule transport | 1 |
| cell adhesion | 1 |
| regulation of cell adhesion | 1 |
| positive regulation of cellular process | 1 |
| developmental maturation | 1 |
| cellular pigment accumulation | 1 |
| pigment cell differentiation | 1 |
| regulation of signal transduction | 1 |
| vascular endothelial growth factor signaling pathway | 1 |
| regulation of cellular response to vascular endothelial growth factor stimulus | 1 |
| regulation of potassium ion transport | 1 |
| potassium ion transmembrane transport | 1 |
| regulation of monoatomic cation transmembrane transport | 1 |
| integrin-mediated signaling pathway | 1 |
| positive regulation of signal transduction | 1 |
| regulation of integrin-mediated signaling pathway | 1 |
| cellular developmental process | 1 |
| biological_process | 1 |
| endocytosis | 1 |
| regulation of endocytosis | 1 |
Protein interactions and networks
STRING
3276 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CD63 | TSG101 | Q99816 | 998 |
| CD63 | SDCBP | O00560 | 995 |
| CD63 | CD81 | P18582 | 992 |
| CD63 | SDCBP2 | Q9H190 | 992 |
| CD63 | ITGB1 | P05556 | 992 |
| CD63 | TIMP1 | P01033 | 990 |
| CD63 | CD9 | P21926 | 988 |
| CD63 | LAMP2 | P13473 | 986 |
| CD63 | LAMP1 | P11279 | 984 |
| CD63 | CD82 | P27701 | 982 |
| CD63 | ANXA2 | P07355 | 982 |
| CD63 | HSPA4 | P34932 | 981 |
| CD63 | FLOT1 | O75955 | 945 |
| CD63 | CD151 | P48509 | 935 |
| CD63 | EGFR | P00533 | 867 |
IntAct
106 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CD9 | ADAM10 | psi-mi:“MI:0914”(association) | 0.750 |
| TIMP1 | CD63 | psi-mi:“MI:0915”(physical association) | 0.690 |
| CD63 | TIMP1 | psi-mi:“MI:0915”(physical association) | 0.690 |
| TIMP1 | CD63 | psi-mi:“MI:0403”(colocalization) | 0.690 |
| TIMP1 | CD63 | psi-mi:“MI:0914”(association) | 0.690 |
| TIMP1 | CD63 | psi-mi:“MI:0407”(direct interaction) | 0.690 |
| RETREG3 | PLSCR1 | psi-mi:“MI:0914”(association) | 0.640 |
| CD63 | TMEM80 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TSPAN2 | TSPAN3 | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS3 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| CLGN | NPC1 | psi-mi:“MI:0914”(association) | 0.530 |
| CDS1 | TSPAN6 | psi-mi:“MI:0914”(association) | 0.530 |
| MFSD4A | HIP1R | psi-mi:“MI:0914”(association) | 0.530 |
| SLC5A9 | CD63 | psi-mi:“MI:0914”(association) | 0.530 |
| CD63 | LGALS8 | psi-mi:“MI:0914”(association) | 0.530 |
| CD63 | env | psi-mi:“MI:0915”(physical association) | 0.500 |
| env | CD63 | psi-mi:“MI:2364”(proximity) | 0.500 |
| CD63 | env | psi-mi:“MI:2364”(proximity) | 0.500 |
| WLS | CD63 | psi-mi:“MI:0915”(physical association) | 0.490 |
| ITGB1 | CD63 | psi-mi:“MI:0915”(physical association) | 0.460 |
| CD63 | ITGB1 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| CD63 | LMP1 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| LMP1 | CD63 | psi-mi:“MI:0403”(colocalization) | 0.460 |
BioGRID (139): SDC1 (Reconstituted Complex), SDCBP (Reconstituted Complex), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (Affinity Capture-MS), CD63 (PCA), CD63 (Affinity Capture-MS)
ESM2 similar proteins: O43657, O46101, O60635, O70352, O70401, O75508, P08962, P0C672, P19331, P19397, P27591, P27701, P28648, P34285, P40237, P41731, P41732, P91799, Q11098, Q22495, Q24188, Q26499, Q28709, Q2KIS9, Q32KU6, Q3MHK4, Q3T0S3, Q4R3L1, Q4R7W6, Q55CV4, Q55CV5, Q55CV7, Q55CW7, Q58DM3, Q5RAS5, Q5RC27, Q5REK8, Q5WRN1, Q60771, Q61451
Diamond homologs: A0A8M2B5N2, A0A8V0ZLT4, A1L157, B0BM39, B3VSC2, B5X3I6, H2L006, O14817, O35566, O70352, O75954, O97703, P08962, P19075, P19397, P24485, P27701, P28648, P30932, P35762, P40237, P41731, P48509, P60033, P60034, P61170, P61171, Q06AA5, Q0VC33, Q28709, Q3ZBH3, Q3ZCD0, Q568Y5, Q58CY8, Q58DM3, Q5R9S6, Q5RAP3, Q61451, Q62745, Q6AYR9
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TFE3 | “up-regulates quantity by expression” | CD63 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 101 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Neutrophil degranulation | 11 | 4.9× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
49 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 1 |
| Uncertain significance | 26 |
| Likely benign | 5 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1452620 | NM_002905.5(RDH5):c.632_633del (p.Pro211fs) | Pathogenic |
| 8006 | NM_002905.5(RDH5):c.880G>C (p.Ala294Pro) | Pathogenic |
| 812394 | NM_002905.5(RDH5):c.718dup (p.Ala240fs) | Pathogenic |
| 866580 | NM_002905.5(RDH5):c.625C>T (p.Arg209Ter) | Pathogenic |
| 3370439 | NM_002905.5(RDH5):c.713G>C (p.Gly238Ala) | Likely pathogenic |
SpliceAI
981 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:55725639:A:C | acceptor_gain | 1.0000 |
| 12:55725807:TCTTA:T | donor_loss | 1.0000 |
| 12:55725808:CTTA:C | donor_loss | 1.0000 |
| 12:55725809:TTACC:T | donor_loss | 1.0000 |
| 12:55725810:TACC:T | donor_loss | 1.0000 |
| 12:55725811:A:AC | donor_gain | 1.0000 |
| 12:55725811:ACCTC:A | donor_loss | 1.0000 |
| 12:55725812:C:CC | donor_gain | 1.0000 |
| 12:55725812:CCT:C | donor_gain | 1.0000 |
| 12:55725892:CAGCC:C | acceptor_gain | 1.0000 |
| 12:55725893:AGCC:A | acceptor_gain | 1.0000 |
| 12:55725894:GCC:G | acceptor_gain | 1.0000 |
| 12:55725895:CC:C | acceptor_gain | 1.0000 |
| 12:55725895:CCC:C | acceptor_gain | 1.0000 |
| 12:55725896:CC:C | acceptor_gain | 1.0000 |
| 12:55725897:C:CC | acceptor_gain | 1.0000 |
| 12:55725897:C:CG | acceptor_loss | 1.0000 |
| 12:55725897:C:T | acceptor_gain | 1.0000 |
| 12:55725898:T:A | acceptor_loss | 1.0000 |
| 12:55725903:G:C | acceptor_gain | 1.0000 |
| 12:55725903:G:GC | acceptor_gain | 1.0000 |
| 12:55725907:C:CT | acceptor_gain | 1.0000 |
| 12:55725908:A:T | acceptor_gain | 1.0000 |
| 12:55725911:C:CT | acceptor_gain | 1.0000 |
| 12:55725913:C:CT | acceptor_gain | 1.0000 |
| 12:55725914:A:T | acceptor_gain | 1.0000 |
| 12:55726116:CCTA:C | donor_loss | 1.0000 |
| 12:55726117:CTAC:C | donor_loss | 1.0000 |
| 12:55726118:TACCT:T | donor_loss | 1.0000 |
| 12:55726119:ACC:A | donor_loss | 1.0000 |
AlphaMissense
1565 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:55726226:C:A | W154C | 0.999 |
| 12:55726226:C:G | W154C | 0.999 |
| 12:55726179:C:G | C170S | 0.993 |
| 12:55726180:A:T | C170S | 0.993 |
| 12:55726228:A:G | W154R | 0.993 |
| 12:55726228:A:T | W154R | 0.993 |
| 12:55726182:C:G | C169S | 0.991 |
| 12:55726183:A:T | C169S | 0.991 |
| 12:55726251:C:G | C146S | 0.990 |
| 12:55726252:A:T | C146S | 0.990 |
| 12:55726248:C:T | G147E | 0.989 |
| 12:55726249:C:A | G147W | 0.989 |
| 12:55726254:C:G | C145S | 0.987 |
| 12:55726255:A:T | C145S | 0.987 |
| 12:55726181:G:C | C169W | 0.986 |
| 12:55726182:C:T | C169Y | 0.986 |
| 12:55726255:A:G | C145R | 0.986 |
| 12:55726178:G:C | C170W | 0.984 |
| 12:55726183:A:G | C169R | 0.984 |
| 12:55726251:C:T | C146Y | 0.984 |
| 12:55725830:C:G | G212R | 0.983 |
| 12:55725830:C:T | G212R | 0.983 |
| 12:55726158:C:G | C177S | 0.983 |
| 12:55726159:A:T | C177S | 0.983 |
| 12:55726227:C:G | W154S | 0.983 |
| 12:55726248:C:A | G147V | 0.983 |
| 12:55725892:C:G | C191S | 0.982 |
| 12:55725893:A:T | C191S | 0.982 |
| 12:55726250:A:C | C146W | 0.980 |
| 12:55726253:G:C | C145W | 0.980 |
dbSNP variants (sampled 300 via entrez): RS1000274649 (12:55727489 G>A,T), RS1000613765 (12:55730534 G>A,C), RS1000876538 (12:55729350 G>T), RS1000943290 (12:55730230 A>G), RS1001266481 (12:55729575 C>G,T), RS1001488475 (12:55726814 A>C,G), RS1001913268 (12:55724899 T>C), RS1001995245 (12:55725166 G>A,T), RS1002391724 (12:55728870 G>A,T), RS1002554272 (12:55731449 C>A,T), RS1002926676 (12:55726318 T>A,C), RS1003055261 (12:55725625 A>C), RS1003558165 (12:55725406 C>T), RS1004356209 (12:55729769 G>C,T), RS1004374956 (12:55728361 G>A)
Disease associations
OMIM: gene MIM:155740 | disease phenotypes: MIM:136880
GenCC curated gene-disease
Mondo (3): inherited retinal dystrophy (MONDO:0019118), fundus albipunctatus (MONDO:0007639), retinitis punctata albescens (MONDO:0018877)
Orphanet (3): OBSOLETE: Inherited retinal disorder (Orphanet:71862), Fundus albipunctatus (Orphanet:227796), Retinitis punctata albescens (Orphanet:52427)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000556 | Retinal dystrophy |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003219_5 | Advanced age-related macular degeneration | 4.000000e-09 |
| GCST008310_10 | Cardiac Troponin-T levels | 3.000000e-07 |
| GCST010002_217 | Refractive error | 6.000000e-174 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:1001492 | atrophic macular degeneration |
| EFO:0005043 | cardiac troponin T measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| C562733 | Fundus Albipunctatus (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3713303 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 405 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL3986824 | LANRAPLENIB | 2 | 319 |
| CHEMBL5083772 | BIIB-091 | 2 | 86 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
11 measured of 11 human assays (11 total across all organisms); most potent 11 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 6-(6-amino-5-methylpyrazin-2-yl)-N-(4-(4-(oxetan-3-yl)piperazin-1-yl)phenyl)imidazo[1,2-a]pyrazin-8-amine | IC50 | 6.2 nM | US-9504684: Syk inhibitors |
| 2-(5-((6-(6-amino-5-methylpyrazin-2-yl)imidazo[1,2-a]pyrazin-8-yl)amino)-2-(4-(oxetan-3-yl)piperazin-1-yl)phenoxy)ethanol | IC50 | 8.7 nM | US-9504684: Syk inhibitors |
| 2-(5-((6-(6-aminopyrazin-2-yl)imidazo[1,2-a]pyrazin-8-yl)amino)-2-(4-(oxetan-3-yl)piperazin-1-yl)phenoxy)ethanol | IC50 | 12.2 nM | US-9504684: Syk inhibitors |
| (R)-(4-(4-((6-(6-aminopyrazin-2-yl)imidazo[1,2-a]pyrazin-8-yl)amino)phenyl)morpholin-2-yl)methanol | IC50 | 13.3 nM | US-9504684: Syk inhibitors |
| 6-(6-aminopyrazin-2-yl)-N-(4-(4-(oxetan-3-yl)piperazin-1-yl)phenyl)imidazo[1,2-a]pyrazin-8-amine | IC50 | 13.5 nM | US-9504684: Syk inhibitors |
| 2-((4-(4-((6-(6-aminopyrazin-2-yl)imidazo[1,2-a]pyrazin-8-yl)amino)phenyl)piperazin-1-yl)methyl)propane-1,3-diol | IC50 | 14.5 nM | US-9504684: Syk inhibitors |
| 6-(5-amino-6-methyl-3-pyridinyl)-N-(4-morpholin-4-ylphenyl)imidazo[1,2-a]pyrazin-8-amine | IC50 | 16 nM | US-9504684: Syk inhibitors |
| 6-(5-amino-3-pyridinyl)-N-(4-morpholin-4-ylphenyl)imidazo[1,2-a]pyrazin-8-amine | IC50 | 31 nM | US-9504684: Syk inhibitors |
| 6-(6-aminopyrazin-2-yl)-5-methyl-N-(4-(4-(oxetan-3-yl)piperazin-1-yl)phenyl)imidazo[1,2-a]pyrazin-8-amine | IC50 | 44 nM | US-9504684: Syk inhibitors |
| 6-(6-amino-3-pyridinyl)-N-(3,4-dimethoxyphenyl)imidazo[1,2-a]pyrazin-8-amine | IC50 | 53 nM | US-9504684: Syk inhibitors |
| 6-(3-aminophenyl)-N-(3,4-dimethoxyphenyl)imidazo[1,2-a]pyrazin-8-amine | IC50 | 188 nM | US-9504684: Syk inhibitors |
ChEMBL bioactivities
12 potent at pChembl≥5 of 14 total, top 12 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.48 | IC50 | 33 | nM | CHEMBL3953841 |
| 7.29 | IC50 | 51 | nM | CHEMBL3917084 |
| 7.10 | IC50 | 80 | nM | LANRAPLENIB |
| 7.09 | IC50 | 82 | nM | BIIB-091 |
| 7.00 | IC50 | 101 | nM | CHEMBL3978560 |
| 6.92 | IC50 | 120 | nM | CHEMBL3902654 |
| 6.89 | IC50 | 128 | nM | CHEMBL3973635 |
| 6.80 | IC50 | 157 | nM | CHEMBL3929647 |
| 6.78 | IC50 | 167 | nM | CHEMBL3911668 |
| 6.60 | IC50 | 250 | nM | CHEMBL3952825 |
| 6.13 | IC50 | 734 | nM | CHEMBL3962740 |
| 6.09 | IC50 | 809 | nM | CHEMBL3981576 |
PubChem BioAssay actives
1 with measured affinity, of 3 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 1-tert-butyl-N-[(5R)-8-[2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]-2-(oxetan-3-yl)-1,3,4,5-tetrahydro-2-benzazepin-5-yl]triazole-4-carboxamide | 1820597: Inhibition of CD63 (unknown origin) assessed as FcepsilonR induced basophil activation | ic50 | 0.0820 | uM |
CTD chemical–gene interactions
71 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, decreases expression, increases expression | 3 |
| Tetrachlorodibenzodioxin | decreases reaction, increases expression | 3 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment, increases expression | 3 |
| sodium arsenite | affects expression, increases expression | 2 |
| N-Formylmethionine Leucyl-Phenylalanine | increases expression, increases reaction, affects reaction, decreases reaction | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Quercetin | affects reaction, increases expression | 2 |
| Smoke | decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | increases expression, affects expression | 2 |
| Valproic Acid | affects cotreatment, increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| bisphenol F | increases expression | 1 |
| fenebrutinib | decreases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| evobrutinib | decreases expression | 1 |
| remibrutinib | decreases expression | 1 |
| orelabrutinib | decreases expression | 1 |
| rilzabrutinib | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| titanium dioxide | increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| cupric chloride | decreases expression | 1 |
| ceric oxide | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation | 1 |
| isobutyl alcohol | affects cotreatment, increases abundance, increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| yessotoxin | increases expression | 1 |
| SB 203580 | decreases reaction, increases expression, increases reaction | 1 |
| chloropicrin | decreases expression | 1 |
| K 7174 | increases expression | 1 |
ChEMBL screening assays
3 unique, capped per target: 3 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3887150 | Binding | High Throughput Syk Biochemical Assay: Syk activity was measured using KinEASE (Cisbio), a time-resolved fluorescence resonance energy transfer (TR-FRET) immunoassay. In this assay, Syk-catalyzes the phosphorylation of a XL665-labeled pepti | Substituted imidazo[1,2-a]pyrazines as Syk inhibitors |
Cellosaurus cell lines
10 cell lines: 6 transformed cell line, 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A8RY | CAP-CD63-tGFP | Transformed cell line | |
| CVCL_A8SA | CAP-CD63-tGFP-Null | Transformed cell line | |
| CVCL_A8SC | CAP-CD63-tGFP-miRNA-493 | Transformed cell line | |
| CVCL_A8SD | CAP-CD63-tGFP-miRNA-744 | Transformed cell line | |
| CVCL_B0ZK | Abcam Hep-G2 CD63 KO | Cancer cell line | Male |
| CVCL_D7M7 | Ubigene A-549 CD63 KO | Cancer cell line | Male |
| CVCL_D9BI | Ubigene HEK293 CD63 KO | Transformed cell line | Female |
| CVCL_D9ZQ | Ubigene HeLa CD63 KO | Cancer cell line | Female |
| CVCL_SH90 | HAP1 CD63 (-) | Cancer cell line | Male |
| CVCL_UF04 | HEK293 CD63 CRISPR | Transformed cell line | Female |
Clinical trials (associated diseases)
40 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT03763227 | PHASE2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT05902962 | PHASE1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | PHASE1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | PHASE1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
| NCT04855045 | PHASE2/PHASE3 | UNKNOWN | An Open-label, Dose Escalation and Double-masked, Randomized, Controlled Trial Evaluating Safety and Tolerability of Sepofarsen in Children (<8 Years of Age) With LCA10 Caused by Mutations in the CEP290 Gene. |
| NCT03872479 | PHASE1/PHASE2 | UNKNOWN | Single Ascending Dose Study in Participants With LCA10 |
| NCT04123626 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Safety and Tolerability of QR-1123 in Subjects With Autosomal Dominant Retinitis Pigmentosa Due to the P23H Mutation in the RHO Gene |
| NCT04545736 | PHASE1/PHASE2 | RECRUITING | Oral Metformin for Treatment of ABCA4 Retinopathy |
| NCT06212297 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Fellow-eye Study (FE) of LX101 in Subjects With Inherited Retinal Dystrophy |
| NCT06852963 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Repeat-Dose, Open-Label, Two Arm Safety and Efficacy Study of Two Doses of VP-001 Administered Intravitreally in Participants With Confirmed PRPF31 Mutation-Associated Retinal Dystrophy, Including Participants Previously Treated With VP001 |
| NCT07177196 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Personalized Antisense Oligonucleotide Therapy for a Single Participant With PRPH2 Mutation Associated With Retinal Dystrophy |
| NCT07063030 | EARLY_PHASE1 | RECRUITING | A Study of LX107 Gene Therapy in AIPL1-IRD Patients |
| NCT01546181 | Not specified | COMPLETED | Retinal Imaging by Adaptive Optics in Healthy Eyes and During Retinal and General Diseases |
| NCT01876147 | Not specified | COMPLETED | Visual and Functional Assessment in Low Vision Patients |
| NCT01920867 | Not specified | UNKNOWN | Stem Cell Ophthalmology Treatment Study |
| NCT02014389 | Not specified | RECRUITING | Evaluation of Objective Perimetry Using Chromatic Multifocal Pupillometer |
| NCT02983305 | Not specified | COMPLETED | Optical Head-Mounted Display Technology for Low Vision Rehabilitation |
| NCT03592017 | Not specified | COMPLETED | Performance of Long-wavelength Autofluorescence Imaging |
| NCT03662386 | Not specified | TERMINATED | Prospective Analysis of Genotype-phenotype Correlations Observed in a Large Cohort of Patients With Hereditary Retinal Dystrophies - GEPHIRD |
| NCT03691168 | Not specified | UNKNOWN | Multi-center Observation of the Natural Course of Inherited Retinal Dystrophies |
| NCT03843840 | Not specified | COMPLETED | Dual Wavelength OCT |
| NCT03853252 | Not specified | COMPLETED | iPS Cells of Patients for Models of Retinal Dystrophies |
| NCT05130385 | Not specified | UNKNOWN | High Resolution Optical Coherence Tomography |
| NCT05294978 | Not specified | RECRUITING | EyeConic: Qualification for Cone-Optogenetics |
| NCT05573984 | Not specified | ACTIVE_NOT_RECRUITING | Natural History of PRPF31 Mutation-Associated Retinal Dystrophy |
| NCT05793515 | Not specified | COMPLETED | Mechanisms of Inherited Retinal Dystrophies Using Whole Genome Sequencing and in Vitro and in Vivo Models |
| NCT05820100 | Not specified | COMPLETED | Observational Study to Assess the Reliability and Validity of the MLYMT and MLSDT |
| NCT05976139 | Not specified | RECRUITING | Micropulsed Laser in Patients With Macular Oedema in Retinal Dystrophies |
| NCT06162585 | Not specified | ACTIVE_NOT_RECRUITING | Non-Interventional Long Term Follow-up Study of Participants Previously Enrolled in the RESTORE Study |
| NCT06177977 | Not specified | RECRUITING | SS-HH-OCT as a Novel Diagnostic Modality for Early-Onset Retinal Dystrophies (EORDs) |
| NCT06375239 | Not specified | RECRUITING | Observational Study to Assess Endpoint Operational Feasibility & Measurement Properties in Patients with Retinal Degeneration |
| NCT06908161 | Not specified | NOT_YET_RECRUITING | Functional Assessments in Vision Impairment |
| NCT07085533 | Not specified | RECRUITING | Natural History Study of Inherited Retinal Diseases |
| NCT07502664 | Not specified | RECRUITING | Development and Evaluation of Functional Visual Field and Navigation Endpoints in Moderate to Profound Inherited Retinal Disease (DEFINE-IRD) |
| NCT07529041 | Not specified | ENROLLING_BY_INVITATION | Real-time Acoustic Biofeedback for Enhancing Fixation Stability: A Proof-of-concept Study to Improve Ophthalmic Imaging Diagnostic Quality |
| NCT02435940 | Not specified | RECRUITING | Inherited Retinal Degenerative Disease Registry |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): age-related macular degeneration, fundus albipunctatus, retinitis punctata albescens, wet macular degeneration