CD72
gene geneOn this page
Also known as LYB2CD72b
Summary
CD72 (CD72 molecule, HGNC:1696) is a protein-coding gene on chromosome 9p13.3, encoding B-cell differentiation antigen CD72 (P21854). Co-receptor of B cell receptor (BCR) that plays both positive and negative roles on B-cell functions.
Enables transmembrane signaling receptor activity. Involved in negative regulation of B cell receptor signaling pathway. Located in plasma membrane.
Source: NCBI Gene 971 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 50 total
- Druggable target: yes
- MANE Select transcript:
NM_001782
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1696 |
| Approved symbol | CD72 |
| Name | CD72 molecule |
| Location | 9p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LYB2, CD72b |
| Ensembl gene | ENSG00000137101 |
| Ensembl biotype | protein_coding |
| OMIM | 107272 |
| Entrez | 971 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 6 protein_coding_CDS_not_defined, 4 protein_coding
ENST00000259633, ENST00000378430, ENST00000378431, ENST00000396757, ENST00000463720, ENST00000465754, ENST00000470387, ENST00000477364, ENST00000482121, ENST00000490239
RefSeq mRNA: 1 — MANE Select: NM_001782
NM_001782
CCDS: CCDS6581
Canonical transcript exons
ENST00000259633 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001526158 | 35609982 | 35610300 |
| ENSE00001526162 | 35618222 | 35618413 |
| ENSE00003461777 | 35612848 | 35612993 |
| ENSE00003474487 | 35615943 | 35616278 |
| ENSE00003497440 | 35610602 | 35610753 |
| ENSE00003545291 | 35618014 | 35618121 |
| ENSE00003558541 | 35617176 | 35617247 |
| ENSE00003633000 | 35611804 | 35611919 |
| ENSE00003657273 | 35616600 | 35616689 |
Expression profiles
Bgee: expression breadth ubiquitous, 184 present calls, max score 96.69.
FANTOM5 (CAGE): breadth broad, TPM avg 2.9198 / max 223.3429, expressed in 800 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 100585 | 1.2476 | 142 |
| 100590 | 0.9232 | 551 |
| 100589 | 0.5159 | 232 |
| 100587 | 0.0998 | 51 |
| 205472 | 0.0572 | 24 |
| 100591 | 0.0391 | 16 |
| 100586 | 0.0370 | 16 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| spleen | UBERON:0002106 | 96.69 | gold quality |
| lymph node | UBERON:0000029 | 91.58 | gold quality |
| granulocyte | CL:0000094 | 91.14 | gold quality |
| vermiform appendix | UBERON:0001154 | 90.48 | gold quality |
| caecum | UBERON:0001153 | 83.40 | gold quality |
| blood | UBERON:0000178 | 82.35 | gold quality |
| bone marrow | UBERON:0002371 | 79.92 | gold quality |
| tonsil | UBERON:0002372 | 79.88 | gold quality |
| gall bladder | UBERON:0002110 | 79.80 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 79.13 | gold quality |
| superficial temporal artery | UBERON:0001614 | 77.27 | gold quality |
| right uterine tube | UBERON:0001302 | 77.08 | gold quality |
| right lung | UBERON:0002167 | 77.05 | gold quality |
| adenohypophysis | UBERON:0002196 | 76.94 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 75.80 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 75.69 | gold quality |
| bone marrow cell | CL:0002092 | 75.68 | gold quality |
| right adrenal gland | UBERON:0001233 | 75.64 | gold quality |
| leukocyte | CL:0000738 | 75.52 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 75.32 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 75.25 | gold quality |
| small intestine | UBERON:0002108 | 75.22 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 75.18 | gold quality |
| islet of Langerhans | UBERON:0000006 | 74.78 | gold quality |
| left adrenal gland | UBERON:0001234 | 74.66 | gold quality |
| type B pancreatic cell | CL:0000169 | 74.56 | gold quality |
| mononuclear cell | CL:0000842 | 74.40 | gold quality |
| monocyte | CL:0000576 | 74.39 | gold quality |
| mucosa of stomach | UBERON:0001199 | 74.28 | gold quality |
| endometrium epithelium | UBERON:0004811 | 73.94 | gold quality |
Single-cell (SCXA)
Detected in 8 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-122 | yes | 67.72 |
| E-HCAD-4 | yes | 55.16 |
| E-CURD-112 | yes | 41.90 |
| E-MTAB-9067 | yes | 17.11 |
| E-ANND-3 | yes | 15.07 |
| E-HCAD-10 | yes | 13.52 |
| E-MTAB-9801 | yes | 5.43 |
| E-MTAB-6386 | no | 1605.08 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, PAX5, SPI1
miRNA regulators (miRDB)
15 targeting CD72, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-548AZ-3P | 99.82 | 70.56 | 3549 |
| HSA-MIR-548BC | 99.82 | 70.61 | 3524 |
| HSA-MIR-548E-3P | 99.82 | 70.59 | 3514 |
| HSA-MIR-548F-3P | 99.82 | 70.59 | 3540 |
| HSA-MIR-548A-3P | 99.76 | 70.58 | 3524 |
| HSA-MIR-148A-3P | 99.74 | 73.77 | 1700 |
| HSA-MIR-148B-3P | 99.74 | 73.75 | 1700 |
| HSA-MIR-152-3P | 99.74 | 73.75 | 1703 |
| HSA-MIR-6840-3P | 98.68 | 65.95 | 1923 |
| HSA-MIR-5088-3P | 98.29 | 66.63 | 1310 |
| HSA-MIR-6842-3P | 98.07 | 66.33 | 1325 |
| HSA-MIR-3652 | 97.71 | 65.43 | 1890 |
| HSA-MIR-4430 | 97.47 | 65.61 | 1813 |
Literature-anchored findings (GeneRIF, showing 18)
- results indicated that the presence of CD72-*2 allele decreases risk for human systemic lupus erythematosus conferred by FCGR2B-232Thr, possibly by increasing the AS isoform of CD72 (PMID:15459183)
- CD72 is a key molecule in regulating mature B cell differentiation; CD72 signaling reduces the expression of X-box binding protein 1 in B cells (PMID:16047337)
- increased nucleotide mutation of CD72 mRNA accounts for the decreased expression level of CD72 in B cells, and it might be related to hyperactivity of B cells in patients with SLE (PMID:17121583)
- CD100-CD72 interaction can be the mechanism by which NK cell communicate with B cells. (PMID:17786190)
- CD72 polymorphisms are associated with age of appearing clinical manifestations in idiopathic thrombocytopenic purpura in Chinese patients. (PMID:18071878)
- Data show that ligation of CD72 with the BU40, or with rCD100 negatively regulates KIT-mediated mast cell proliferation, chemotaxis, and chemokine production. (PMID:20100931)
- CD72 mRNA expression level correlates with Sema4D expression in peripheral blood mononuclear cells in immune thrombocytopenia. (PMID:22111667)
- data demonstrated aberrant expression of CD72 exists on B cells of myasthenia gravis and multiple sclerosis patients and expression level of CD72 molecule has a significantly negative correlation with anti-AchR antibody levels in myasthenia gravis (PMID:23184497)
- regulates serum immunoglobulin leveln and disease resistance in systemic lupus erythematosus (PMID:23268649)
- CD72 expression on activated B cells of SLE patients was significantly lower than that of normal controls. sema3A enhanced CD72 expression of B cells, but it was still lower in SLE patients than in normal individuals. (PMID:24461079)
- Increased soluble CD72 in systemic lupus erythematosus is in association with disease activity and lupus nephritis (PMID:26883681)
- Interferon-alpha-induced CD100 expression on naive CD8(+) T cells enhances antiviral responses to hepatitis C infection through CD72 signal transduction. (PMID:28222623)
- A regulatory role for CD72 expression on B cells and increased soluble CD72 in primary Sjogren’s syndrome. (PMID:32306893)
- CD40 and CD72 expression and prognostic values among children with systemic lupus erythematosus: a case-control study. (PMID:32700598)
- Blockage of CD72 reduces B cell proliferation in immune thrombocytopenic purpura, involving interleukin 1 and macrophage migration inhibitory factor secretion. (PMID:36326455)
- CD72-semaphorin3A axis: A new regulatory pathway in systemic lupus erythematosus. (PMID:36470209)
- CD72 is a pan-tumor antigen associated to pediatric acute leukemia. (PMID:37876342)
- CD72, a new immune checkpoint molecule, is a novel prognostic biomarker for kidney renal clear cell carcinoma. (PMID:37980541)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Cd72 | ENSMUSG00000028459 |
| rattus_norvegicus | Cd72 | ENSRNOG00000017485 |
Protein
Protein identifiers
B-cell differentiation antigen CD72 — P21854 (reviewed: P21854)
Alternative names: Lyb-2
All UniProt accessions (5): A0A6E1WA84, P21854, Q5T4Q7, Q5T4Q8, Q5TLG3
UniProt curated annotations — full annotation on UniProt →
Function. Co-receptor of B cell receptor (BCR) that plays both positive and negative roles on B-cell functions. Recognizes the Sm/ribonucleoprotein (RNP) self-antigen ligand, and coligation of CD72 and BCR inhibits BCR signaling. Mechanistically, ligand binding leads to the recruitment of PTPN6/SHP-1 to the BCR complex which is inhibitory to BCR signaling. Also acts as a ligand for CD5 and thereby plays a critical role in maintaining regulatory T and B-cell homeostasis.
Subunit / interactions. Homodimer; disulfide-linked. Associates with CD5. Interacts (tyrosine phosphorylated) with PTPN6/SHP-1.
Subcellular location. Membrane.
Tissue specificity. Pre-B-cells and B-cells but not terminally differentiated plasma cells.
Post-translational modifications. Phosphorylated upon engagement of the B-cell receptor, probably by LYN or SYK. Phosphorylation at Tyr-7 is important for interaction with PTPN6/SHP-1.
RefSeq proteins (1): NP_001773* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001304 | C-type_lectin-like | Domain |
| IPR016186 | C-type_lectin-like/link_sf | Homologous_superfamily |
| IPR016187 | CTDL_fold | Homologous_superfamily |
| IPR039689 | CD72 | Family |
Pfam: PF00059
UniProt features (12 total): disulfide bond 3, topological domain 2, modified residue 2, chain 1, sequence variant 1, transmembrane region 1, domain 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P21854-F1 | 76.85 | 0.48 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 7, 39
Disulfide bonds (3): 325–342, 233–244, 261–350
Glycosylation sites (1): 136
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-416700 | Other semaphorin interactions |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-373755 | Semaphorin interactions |
| R-HSA-422475 | Axon guidance |
| R-HSA-9675108 | Nervous system development |
MSigDB gene sets: 340 (showing top):
PID_BCR_5PATHWAY, GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_DN, GOBP_REGULATION_OF_B_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, YAGI_AML_WITH_INV_16_TRANSLOCATION, GCANCTGNY_MYOD_Q6, REACTOME_OTHER_SEMAPHORIN_INTERACTIONS, GOBP_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, MORI_IMMATURE_B_LYMPHOCYTE_UP, CAGCTG_AP4_Q5, GOBP_REGULATION_OF_IMMUNE_RESPONSE, MODULE_75, ODONNELL_TARGETS_OF_MYC_AND_TFRC_UP, chr9p13, MODULE_410
GO Biological Process (2): cell adhesion (GO:0007155), negative regulation of B cell receptor signaling pathway (GO:0050859)
GO Molecular Function (4): transmembrane signaling receptor activity (GO:0004888), signaling receptor binding (GO:0005102), carbohydrate binding (GO:0030246), protein binding (GO:0005515)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Semaphorin interactions | 1 |
| Axon guidance | 1 |
| Nervous system development | 1 |
| Developmental Biology | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| cellular process | 1 |
| B cell receptor signaling pathway | 1 |
| regulation of B cell receptor signaling pathway | 1 |
| negative regulation of antigen receptor-mediated signaling pathway | 1 |
| signaling receptor activity | 1 |
| protein binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1248 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CD72 | SEMA4D | Q92854 | 998 |
| CD72 | CD5 | P06127 | 992 |
| CD72 | PLXNB1 | O43157 | 846 |
| CD72 | FCGR2B | P31994 | 803 |
| CD72 | CD22 | P20273 | 795 |
| CD72 | PTPN6 | P29350 | 719 |
| CD72 | SEMA4A | Q9H3S1 | 676 |
| CD72 | PLXNB2 | O15031 | 624 |
| CD72 | CD79A | P11912 | 622 |
| CD72 | CD79B | P40259 | 586 |
| CD72 | FCRLA | Q7L513 | 572 |
| CD72 | CD19 | P15391 | 552 |
| CD72 | CHIA | Q9BZP6 | 552 |
| CD72 | CD6 | P30203 | 550 |
| CD72 | CR2 | P20023 | 532 |
IntAct
54 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CD72 | CGRRF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | LHFPL5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | SPACA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | ATP6AP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | GRAMD1C | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | BIK | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | NRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | LSMEM2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | CREB3L1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | MS4A7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN7 | CD72 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | LRRC25 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | GPR152 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD72 | MS4A3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATP6AP2 | CD72 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SEMA4D | CD72 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HMGA1 | CD72 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CD5 | CD72 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CD72 | TRUB1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CD72 | NCAM2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| FCGR2A | CD72 | psi-mi:“MI:0915”(physical association) | 0.400 |
| FCGR1A | CD72 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CD72 | CALML3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (33): CD72 (Reconstituted Complex), SIGLEC10 (Affinity Capture-MS), KLHL15 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CD72 (Two-hybrid), CD72 (Affinity Capture-Western), CD72 (Affinity Capture-Western), CD72 (Two-hybrid), CD72 (Two-hybrid), CD72 (Two-hybrid), MS4A3 (Two-hybrid), NRG1 (Two-hybrid), CREB3L1 (Two-hybrid), MS4A7 (Two-hybrid), LRRC25 (Two-hybrid)
ESM2 similar proteins: A4KWA1, D4AD02, O70156, O70215, P20937, P21854, P21855, P26715, P26717, P27471, P27811, P27812, P27814, P60883, Q149M0, Q2HXU8, Q2NL33, Q504P2, Q5QGZ9, Q60651, Q60652, Q60653, Q60654, Q60660, Q60682, Q64329, Q6QLQ4, Q6UXN8, Q6WRU0, Q80ZC8, Q8BRU4, Q8BWY2, Q8CJC7, Q8HY02, Q8HY04, Q8HY06, Q8MI05, Q8NC01, Q8VBX4, Q8VD98
Diamond homologs: A4KWA5, A4KWA8, O88713, O89335, P06734, P0CA63, P0CA64, P14370, P14371, P21854, P26715, Q0H8B9, Q5M9I1, Q64329, Q64335, Q65150, Q6ZS10, Q80XD9, Q8C1T8, Q8CJC7, Q8VI21, Q91V08, Q92478, Q925N7, Q9D676, Q9MZJ3, Q9R0Q8, Q9UHP7, P07307, P21855, P34927, P49300, P49301, Q69FH1, Q8HZR8, Q8IUN9, Q9BXN2, A4KWA6, A6QP79, D3W0D1
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PTPN6 | down-regulates | CD72 | dephosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
50 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 38 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1423 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:35612846:A:AC | donor_gain | 0.9900 |
| 9:35612847:C:CC | donor_gain | 0.9900 |
| 9:35617174:A:AC | donor_gain | 0.9900 |
| 9:35617175:C:CC | donor_gain | 0.9900 |
| 9:35617245:CCG:C | acceptor_gain | 0.9900 |
| 9:35617246:CG:C | acceptor_gain | 0.9900 |
| 9:35617246:CGC:C | acceptor_gain | 0.9900 |
| 9:35617248:C:CC | acceptor_gain | 0.9900 |
| 9:35618076:TGA:T | donor_gain | 0.9900 |
| 9:35619511:CCA:C | donor_gain | 0.9900 |
| 9:35615937:GGATA:G | donor_loss | 0.9800 |
| 9:35615938:GATA:G | donor_loss | 0.9800 |
| 9:35615939:ATAC:A | donor_loss | 0.9800 |
| 9:35615940:TA:T | donor_loss | 0.9800 |
| 9:35615941:A:C | donor_loss | 0.9800 |
| 9:35615942:CCTG:C | donor_gain | 0.9800 |
| 9:35616594:A:AC | donor_gain | 0.9800 |
| 9:35616595:C:CC | donor_gain | 0.9800 |
| 9:35618220:AC:A | donor_gain | 0.9800 |
| 9:35618221:CC:C | donor_gain | 0.9800 |
| 9:35612915:T:A | donor_gain | 0.9700 |
| 9:35616599:CAG:C | donor_gain | 0.9700 |
| 9:35616599:CAGCG:C | donor_gain | 0.9700 |
| 9:35616691:T:C | acceptor_gain | 0.9700 |
| 9:35617247:GC:G | acceptor_loss | 0.9700 |
| 9:35617248:CTGT:C | acceptor_loss | 0.9700 |
| 9:35617249:T:C | acceptor_loss | 0.9700 |
| 9:35618016:G:A | donor_gain | 0.9700 |
| 9:35619506:CCTCA:C | donor_loss | 0.9700 |
| 9:35619507:CTCAC:C | donor_loss | 0.9700 |
AlphaMissense
2308 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:35612971:C:A | W237C | 0.997 |
| 9:35612971:C:G | W237C | 0.997 |
| 9:35612973:A:G | W237R | 0.994 |
| 9:35612973:A:T | W237R | 0.994 |
| 9:35612900:C:G | C261S | 0.993 |
| 9:35612901:A:T | C261S | 0.993 |
| 9:35618268:A:C | F12L | 0.992 |
| 9:35618268:A:T | F12L | 0.992 |
| 9:35618270:A:G | F12L | 0.992 |
| 9:35610655:C:G | C350S | 0.991 |
| 9:35610656:A:T | C350S | 0.991 |
| 9:35611860:C:A | W298C | 0.991 |
| 9:35611860:C:G | W298C | 0.991 |
| 9:35610655:C:T | C350Y | 0.987 |
| 9:35612899:A:C | C261W | 0.986 |
| 9:35610654:A:C | C350W | 0.985 |
| 9:35612900:C:T | C261Y | 0.985 |
| 9:35612950:G:C | C244W | 0.985 |
| 9:35612911:G:C | S257R | 0.984 |
| 9:35612911:G:T | S257R | 0.984 |
| 9:35612913:T:G | S257R | 0.984 |
| 9:35612951:C:G | C244S | 0.984 |
| 9:35612952:A:T | C244S | 0.984 |
| 9:35612920:C:A | W254C | 0.983 |
| 9:35612920:C:G | W254C | 0.983 |
| 9:35612900:C:A | C261F | 0.982 |
| 9:35612901:A:G | C261R | 0.982 |
| 9:35612951:C:T | C244Y | 0.982 |
| 9:35612952:A:G | C244R | 0.982 |
| 9:35610656:A:G | C350R | 0.977 |
dbSNP variants (sampled 300 via entrez): RS1000058731 (9:35638800 G>A,C), RS1000096557 (9:35632070 C>G), RS1000105675 (9:35640585 A>G), RS1000513122 (9:35610046 G>A,T), RS1000528127 (9:35615217 G>A), RS1000561031 (9:35640332 C>T), RS1000566923 (9:35610234 G>A,C,T), RS1000659432 (9:35637423 C>T), RS1000718185 (9:35646194 G>T), RS1000747793 (9:35645800 C>T), RS1000793277 (9:35629435 ATATG>A), RS1000816561 (9:35611344 C>T), RS1000968625 (9:35623323 G>A,C), RS1001093015 (9:35637250 C>T), RS1001103118 (9:35630451 C>G)
Disease associations
OMIM: gene MIM:107272 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002709_10 | Electroencephalogram traits | 2.000000e-06 |
| GCST006585_664 | Blood protein levels | 5.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004357 | electroencephalogram measurement |
| EFO:0006870 | alpha wave measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5169122 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
29 total (human), top 29 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| GSK-J4 | decreases expression | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| titanium dioxide | increases expression | 1 |
| terbufos | increases methylation | 1 |
| sodium arsenite | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| ON 01910 | decreases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Air Pollutants | decreases methylation, increases abundance | 1 |
| Arsenic | affects methylation | 1 |
| Atrazine | increases expression | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Fonofos | increases methylation | 1 |
| Lipopolysaccharides | decreases expression, affects response to substance, increases expression | 1 |
| Nitrogen Dioxide | decreases methylation, increases abundance | 1 |
| Oxygen | increases expression | 1 |
| Parathion | increases methylation | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Permethrin | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5136271 | Binding | Induction of CD72 degradation in human MINO cells at 100 nM measured after 8 hrs by proteomic analysis | Structural Feature Analyzation Strategies toward Discovery of Orally Bioavailable PROTACs of Bruton’s Tyrosine Kinase for the Treatment of Lymphoma. — J Med Chem |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E1JS | HyCyte Daudi KO-hCD72 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.