CD81
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Also known as TAPA-1TSPAN28S5.7
Summary
CD81 (CD81 molecule, HGNC:1701) is a protein-coding gene on chromosome 11p15.5, encoding CD81 antigen (P60033). Structural component of specialized membrane microdomains known as tetraspanin-enriched microdomains (TERMs), which act as platforms for receptor clustering and signaling.
The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein that is known to complex with integrins. This protein appears to promote muscle cell fusion and support myotube maintenance. Also it may be involved in signal transduction. This gene is localized in the tumor-suppressor gene region and thus it is a candidate gene for malignancies. Two transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 975 — RefSeq curated summary.
At a glance
- Gene–disease (curated): common variable immunodeficiency (Supportive, GenCC) — +1 more curated relationship
- GWAS associations: 3
- Clinical variants (ClinVar): 325 total
- Phenotypes (HPO): 19
- Druggable target: yes
- MANE Select transcript:
NM_004356
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1701 |
| Approved symbol | CD81 |
| Name | CD81 molecule |
| Location | 11p15.5 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TAPA-1, TSPAN28, S5.7 |
| Ensembl gene | ENSG00000110651 |
| Ensembl biotype | protein_coding |
| OMIM | 186845 |
| Entrez | 975 |
Gene structure
Transcript identifiers
Ensembl transcripts: 28 — 23 protein_coding, 4 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000263645, ENST00000381036, ENST00000464784, ENST00000468153, ENST00000475945, ENST00000481386, ENST00000481687, ENST00000492252, ENST00000492627, ENST00000493525, ENST00000524805, ENST00000526072, ENST00000527343, ENST00000530239, ENST00000530648, ENST00000531840, ENST00000533417, ENST00000905044, ENST00000905045, ENST00000905046, ENST00000905047, ENST00000905048, ENST00000905049, ENST00000905050, ENST00000905051, ENST00000935698, ENST00000952132, ENST00000952133
RefSeq mRNA: 10 — MANE Select: NM_004356
NM_001297649, NM_001425129, NM_001425130, NM_001425131, NM_001425132, NM_001425134, NM_001425135, NM_001425137, NM_001425138, NM_004356
CCDS: CCDS73240, CCDS7734
Canonical transcript exons
ENST00000263645 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001227086 | 2377310 | 2377615 |
| ENSE00001487300 | 2396804 | 2397397 |
| ENSE00002178453 | 2395869 | 2395970 |
| ENSE00003514938 | 2394972 | 2395046 |
| ENSE00003560442 | 2394095 | 2394192 |
| ENSE00003595296 | 2390412 | 2390526 |
| ENSE00003790707 | 2395416 | 2395520 |
| ENSE00003976562 | 2396628 | 2396714 |
Expression profiles
Bgee: expression breadth ubiquitous, 302 present calls, max score 99.84.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 462.2358 / max 3640.9614, expressed in 1818 samples.
FANTOM5 promoters (11 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 112686 | 461.5977 | 1816 |
| 112688 | 0.2153 | 58 |
| 112683 | 0.1817 | 23 |
| 112682 | 0.0533 | 17 |
| 206161 | 0.0434 | 15 |
| 112685 | 0.0387 | 9 |
| 112689 | 0.0325 | 17 |
| 112692 | 0.0261 | 20 |
| 112684 | 0.0220 | 7 |
| 112690 | 0.0127 | 6 |
Top tissues by expression
303 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 99.84 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.79 | gold quality |
| body of uterus | UBERON:0009853 | 99.77 | gold quality |
| right coronary artery | UBERON:0001625 | 99.72 | gold quality |
| endocervix | UBERON:0000458 | 99.71 | gold quality |
| right uterine tube | UBERON:0001302 | 99.71 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.69 | gold quality |
| left uterine tube | UBERON:0001303 | 99.67 | gold quality |
| ascending aorta | UBERON:0001496 | 99.67 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.67 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.67 | gold quality |
| myometrium | UBERON:0001296 | 99.66 | gold quality |
| tibial nerve | UBERON:0001323 | 99.66 | gold quality |
| left coronary artery | UBERON:0001626 | 99.66 | gold quality |
| apex of heart | UBERON:0002098 | 99.66 | gold quality |
| right lung | UBERON:0002167 | 99.66 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 99.66 | gold quality |
| lower esophagus | UBERON:0013473 | 99.66 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.66 | gold quality |
| peripheral nervous system | UBERON:0000010 | 99.65 | gold quality |
| nerve | UBERON:0001021 | 99.65 | gold quality |
| coronary artery | UBERON:0001621 | 99.65 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.65 | gold quality |
| upper lobe of lung | UBERON:0008948 | 99.64 | gold quality |
| omental fat pad | UBERON:0010414 | 99.64 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.64 | gold quality |
| gall bladder | UBERON:0002110 | 99.63 | gold quality |
| peritoneum | UBERON:0002358 | 99.63 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.62 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.62 | gold quality |
Single-cell (SCXA)
Detected in 15 experiment(s), a significant marker in 10.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-124263 | yes | 2156.70 |
| E-MTAB-10287 | yes | 1959.68 |
| E-HCAD-13 | yes | 548.26 |
| E-CURD-122 | yes | 70.83 |
| E-GEOD-137537 | yes | 37.92 |
| E-HCAD-1 | yes | 18.61 |
| E-MTAB-9067 | yes | 13.70 |
| E-MTAB-10553 | yes | 5.82 |
| E-HCAD-25 | yes | 4.69 |
| E-MTAB-10018 | no | 1043.65 |
| E-ENAD-20 | no | 746.02 |
| E-CURD-79 | no | 502.43 |
| E-GEOD-99795 | no | 198.14 |
| E-MTAB-7052 | no | 196.24 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| HAMP | Activation |
Upstream regulators (CollecTRI, top): HHEX, PITX2
miRNA regulators (miRDB)
49 targeting CD81, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548I | 99.94 | 71.25 | 3481 |
| HSA-MIR-548J-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548O-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548W | 99.94 | 71.24 | 3488 |
| HSA-MIR-548Y | 99.94 | 71.28 | 3514 |
| HSA-MIR-6768-5P | 99.92 | 67.36 | 1942 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-548AG | 99.77 | 69.25 | 1492 |
Literature-anchored findings (GeneRIF, showing 40)
- CD81 regulates neuron-induced astrocyte proliferation via a contact-dependent mechanism. (PMID:11273649)
- C-kit is physically associated with transmembrane 4 superfamily proteins CD9, CD63, and CD81, that may negatively modulate c-kit and thus regulate c-kit receptor sensitivity to SLF in hematopoietic progenitors. (PMID:12036870)
- Variation of hepatitis C virus load, hypervariable region 1 quasispecies and CD81 hepatocyte expression in hepatocellular carcinoma and adjacent non-cancerous liver. (PMID:12210407)
- E2-binding site on CD81 comprises residues Ile(182), Phe(186), Asn(184), and Leu(162) (PMID:12368358)
- Release and intercellular trafficking of CD81-positive microparticles regulate the expression of CD81 surface receptors in lymphocytes and play a role in the immune response during infections. (PMID:12421929)
- CD81 colocalizes at the central zone of the supramolecular activation complex in both T lymphocytes and antigen presenting cells, suggesting a role for CD81 during antigen presentation. (PMID:12471100)
- Data show that CD81, a putative receptor for hepatitis C virus, is required on hepatocytes for human Plasmodium falciparum and rodent Plasmodium yoelii sporozoite infectivity. (PMID:12483205)
- two peptides from human CD81 (hCD81) large extra-cellular loop (LEL) with known importance in the hepatitis C virus glycoprotein E2 (HCV-E2) binding interaction was characterized using circular dichroism spectroscopy (PMID:12492902)
- While CD81 specifically binds to HCV-E2 protein, the entry of HCV into human hepatocytes might be regulated by CD81-unrelated molecule(s). (PMID:12519228)
- Signalling through CD81 on T cells costimulates both Th1 and Th2 cells, but increases the number of Th2 cells during long-term activation. (PMID:12597781)
- The costimulatory effects of HCV E2 on T cells depend on CD81 cross-linking that activates Lck through raft aggregation and thus leads to enhanced TCR signaling. (PMID:12645944)
- Expression of the CD81 tetraspanin in non-permissive CD81-negative hepato-carcinoma cells was sufficient to restore susceptibility to HCVpp infection, confirming its critical role as a cell attachment factor. (PMID:12913001)
- Coligation of the B cell antigen receptor with the complement (C3)-binding CD21/CD19/CD81 costimulatory complex can enhance the escape of human B cells from Fas-induced death. (PMID:14607925)
- CD81 is linked to ERK/MAPkinase signaling by Shc in liver tumor cells. (PMID:14676841)
- CD81 stimulates synthesis of phosphoinositides with the recruitment of Shc to the plasma membrane via PTB domain, and this sequence of events induces activation of ERK/MAPKinase. (PMID:14676841)
- data suggest a functional role for CD81 as a coreceptor for Hepatitis C virus glycoprotein-dependent viral cell entry (PMID:14722300)
- Phage display selection on murine fibroblasts yielded a small peptide specific for HCV receptor human CD81. (PMID:14728804)
- CD81 signaling events could be mediated by 14-3-3 adapter proteins, and these signals may be dependent on cellular redox (PMID:14966136)
- CD81 functions as a post-attachment entry coreceptor and that other cellular factors act in concert with CD81 to mediate hepatitic C virus binding and entry into hepatocytes (PMID:15123813)
- CD81, together with additional unknown liver specific receptor(s), mediate the hepacivirus-cell entry process. (PMID:15280458)
- CD81 expression and HCV core antigen levels in PBMCs are increased in patients with mixed cryoglobulinemia (PMID:15294858)
- binding with HCV E2 induces RANTES secretion and internalization of CCR5. (PMID:15500552)
- These results suggest that the LEL has a more robust structure in the intact tetraspanin with regions outside the LEL contributing to CD81 dimerization. (PMID:15670777)
- These findings suggest that engagement of CD81 decreases the signaling threshold required to initiate TCR/CD3-mediated induction of integrated HIV-1 proviral DNA in primary CD4+ T cells. (PMID:15767432)
- interactions with hepatitis C virus e2 protein may modulate host’s innate or adaptive immune response. (PMID:15956553)
- CD81-mediated activation of B cells in vitro recapitulates the effects of hepatitis C virus binding to B cell CD81 in vivo (PMID:16339892)
- in CD81, numerous membrane-exposed aromatic residues are asymmetrically clustered and protrude on one side of the transmembrane domain (PMID:16352525)
- CD81-mediated hepatitis C virus (HCV)pseudoparticle entry entails HCV E2 protein binding to residues in the large extracellular loop as well as molecular events mediated by the transmembrane and intracellular domains of CD81. (PMID:16641285)
- Lymphocyte subsets show different patterns of CD81 response before and during antiviral treatment, which are associated with administration of IFN-alpha and antiviral response (PMID:16735696)
- Specific amino acids conserved in E2 across all genotypes that were critical for CD81 binding were W420, Y527, W529, G530, and D535. These data significantly increase our understanding of the CD81 receptor-E2 binding process. (PMID:16912317)
- role of CD81 and CD9 on the cell-to-cell fusion process mediated by HIV-1, syncytia formation induced by HIV-1 envelope proteins and viral entry in human T lymphoblasts (PMID:17015697)
- These data indicate that a high density of cell surface-exposed CD81 is a key determinant for productive HCV entry into host cells. (PMID:17079281)
- These findings support an immunogenic model of hepatitis C virus E2 having three immunogenic domains with distinct structures and functions and provide added support for the idea that CD81 is required for Hepacivirus entry. (PMID:17079294)
- Association of HTLV-1 Gag protein with tetraspanin-enriched microdomains is mediated by the inner loops of CD81 and CD82. (PMID:17166843)
- CD81 down-regulation on B cells is associated with the response to interferon-alpha-based treatment for chronic hepatitis. (PMID:17194487)
- CD81 expression is an important determinant of hepatitis C virus permissiveness of Huh7 cell clones harboring different characteristics (PMID:17329343)
- transferrin receptor and CD9, CD81, and CD9P-1 are differentially sorted into exosomes after TPA treatment of K562 cells (PMID:17407154)
- these data suggested that both HSPG and CD81 are important for HCV entry. (PMID:17457918)
- Results suggest that hepatitis C virus envelope glycoprotein E2 glycans modulate entry, CD81 binding, and neutralization by masking functionally important regions of E2 . (PMID:17507469)
- Data show that HIV-1 envelope glycoprotein (Env) and core protein (Gag) colocalize strongly with CD63 and CD81 and less strongly with CD9, and suggest that HIV-1 promotes virus assembly and cell-cell transfer by targeting these plasma membrane proteins. (PMID:17522207)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cd81b | ENSDARG00000022437 |
| danio_rerio | cd81a | ENSDARG00000036080 |
| mus_musculus | Cd81 | ENSMUSG00000037706 |
| rattus_norvegicus | Cd81 | ENSRNOG00000020451 |
| caenorhabditis_elegans | WBGENE00006635 |
Paralogs (32): TSPAN6 (ENSG00000000003), CD9 (ENSG00000010278), TSPAN9 (ENSG00000011105), TSPAN17 (ENSG00000048140), TSPAN32 (ENSG00000064201), CD82 (ENSG00000085117), TSPAN15 (ENSG00000099282), CD37 (ENSG00000104894), UPK1A (ENSG00000105668), TSPAN12 (ENSG00000106025), TSPAN13 (ENSG00000106537), TSPAN14 (ENSG00000108219), TSPAN11 (ENSG00000110900), PRPH2 (ENSG00000112619), UPK1B (ENSG00000114638), TSPAN1 (ENSG00000117472), TSPAN8 (ENSG00000127324), TSPAN16 (ENSG00000130167), TSPAN2 (ENSG00000134198), CD63 (ENSG00000135404), TSPAN31 (ENSG00000135452), TSPAN3 (ENSG00000140391), CD53 (ENSG00000143119), ROM1 (ENSG00000149489), TSPAN7 (ENSG00000156298), TSPAN18 (ENSG00000157570), TSPAN33 (ENSG00000158457), TSPAN5 (ENSG00000168785), CD151 (ENSG00000177697), TSPAN10 (ENSG00000182612), TSPAN4 (ENSG00000214063), TSPAN19 (ENSG00000231738)
Protein
Protein identifiers
CD81 antigen — P60033 (reviewed: P60033)
Alternative names: 26 kDa cell surface protein TAPA-1, Target of the antiproliferative antibody 1, Tetraspanin-28
All UniProt accessions (10): P60033, A6NMH8, E9PIF1, E9PJK1, E9PPF5, E9PQV4, E9PRJ8, H0YDJ9, H0YDL9, H0YEE2
UniProt curated annotations — full annotation on UniProt →
Function. Structural component of specialized membrane microdomains known as tetraspanin-enriched microdomains (TERMs), which act as platforms for receptor clustering and signaling. Essential for trafficking and compartmentalization of CD19 receptor on the surface of activated B cells. Upon initial encounter with microbial pathogens, enables the assembly of CD19-CR2/CD21 and B cell receptor (BCR) complexes at signaling TERMs, lowering the threshold dose of antigen required to trigger B cell clonal expansion and antibody production. In T cells, facilitates the localization of CD247/CD3 zeta at antigen-induced synapses with B cells, providing for costimulation and polarization toward T helper type 2 phenotype. Present in MHC class II compartments, may also play a role in antigen presentation. Can act both as positive and negative regulator of homotypic or heterotypic cell-cell fusion processes. Positively regulates sperm-egg fusion and may be involved in acrosome reaction. In myoblasts, associates with CD9 and PTGFRN and inhibits myotube fusion during muscle regeneration. In macrophages, associates with CD9 and beta-1 and beta-2 integrins, and prevents macrophage fusion into multinucleated giant cells specialized in ingesting complement-opsonized large particles. Also prevents the fusion of mononuclear cell progenitors into osteoclasts in charge of bone resorption. May regulate the compartmentalization of enzymatic activities. In T cells, defines the subcellular localization of dNTPase SAMHD1 and permits its degradation by the proteasome, thereby controlling intracellular dNTP levels. Also involved in cell adhesion and motility. Positively regulates integrin-mediated adhesion of macrophages, particularly relevant for the inflammatory response in the lung. (Microbial infection) Acts as a receptor for hepatitis C virus (HCV) in hepatocytes. Association with CLDN1 and the CLDN1-CD81 receptor complex is essential for HCV entry into host cell. (Microbial infection) Involved in SAMHD1-dependent restriction of HIV-1 replication. May support early replication of both R5- and X4-tropic HIV-1 viruses in T cells, likely via proteasome-dependent degradation of SAMHD1. (Microbial infection) Specifically required for Plasmodium falciparum infectivity of hepatocytes, controlling sporozoite entry into hepatocytes via the parasitophorous vacuole and subsequent parasite differentiation to exoerythrocytic forms.
Subunit / interactions. Homodimer. Part of a complex composed of CD19, CR2/CD21, CD81 and IFITM1/CD225 in the membrane of mature B cells. Interacts (via the second extracellular domain) with CD19; this interaction is initiated early during biosynthesis in the ER and enables trafficking of only properly folded CD19. Part of a complex that includes MHC class II/HLA-DR molecules and IFITM1. Interacts with IFITM1. Interacts with IFITM2 and IFITM3. Part of integrin-tetraspanin complex composed of CD9, CD81, beta-1 and beta-2 integrins in the membrane of monocyte/macrophages. Interacts (via the second extracellular domain) with integrin ITGAV:ITGB3. Interacts with CD247/CD3 zeta, ICAM1 and CD9 at the immune synapse on T cell membrane. Part of a GPCR-tetraspanin complex consisting at least of ADGRG1, CD81, possibly CD9, and GNA11 in which CD81 enhances the association of ADGRG1 with GNA11. Part of a complex composed of CD9, CD81, PTGFRN and IGSF8. Interacts directly with IGSF8. Interacts with CD53 and SCIMP. Interacts with SAMHD1 (via its C-terminus). Interacts with glypican GPC3 and with the transcriptional repressor HHEX; binding to GPC3 decreases the availability of free CD81 for binding to HHEX, resulting in nuclear translocation of HHEX and transcriptional repression. Interacts with CLDN1. Interacts with CLDN6 and CLDN9. (Microbial infection) Plays a critical role in HCV attachment and/or cell entry by interacting with HCV E1/E2 glycoproteins heterodimer.
Subcellular location. Cell membrane. Basolateral cell membrane.
Tissue specificity. Expressed on B cells (at protein level). Expressed in hepatocytes (at protein level). Expressed in monocytes/macrophages (at protein level). Expressed on both naive and memory CD4-positive T cells (at protein level).
Post-translational modifications. Not glycosylated. Likely constitutively palmitoylated at low levels. Protein palmitoylation is up-regulated upon coligation of BCR and CD9-C2R-CD81 complexes in lipid rafts.
Disease relevance. Immunodeficiency, common variable, 6 (CVID6) [MIM:613496] A primary immunodeficiency characterized by antibody deficiency, hypogammaglobulinemia, recurrent bacterial infections and an inability to mount an antibody response to antigen. The defect results from a failure of B-cell differentiation and impaired secretion of immunoglobulins; the numbers of circulating B-cells is usually in the normal range, but can be low. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. Binds cholesterol in a cavity lined by the transmembrane spans.
Similarity. Belongs to the tetraspanin (TM4SF) family.
RefSeq proteins (10): NP_001284578, NP_001412058, NP_001412059, NP_001412060, NP_001412061, NP_001412063, NP_001412064, NP_001412066, NP_001412067, NP_004347* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000301 | Tetraspanin_animals | Family |
| IPR008952 | Tetraspanin_EC2_sf | Homologous_superfamily |
| IPR018499 | Tetraspanin/Peripherin | Family |
| IPR018503 | Tetraspanin_CS | Conserved_site |
Pfam: PF00335
UniProt features (43 total): mutagenesis site 14, helix 12, topological domain 5, transmembrane region 4, site 3, disulfide bond 2, chain 1, binding site 1, strand 1
Structure
Experimental structures (PDB)
16 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5M33 | X-RAY DIFFRACTION | 1.28 |
| 1G8Q | X-RAY DIFFRACTION | 1.6 |
| 3X0E | X-RAY DIFFRACTION | 1.84 |
| 5M2C | X-RAY DIFFRACTION | 1.96 |
| 5M3T | X-RAY DIFFRACTION | 2.02 |
| 6EJM | X-RAY DIFFRACTION | 2.15 |
| 5DFW | X-RAY DIFFRACTION | 2.33 |
| 5M3D | X-RAY DIFFRACTION | 2.38 |
| 6U9S | X-RAY DIFFRACTION | 2.4 |
| 1IV5 | X-RAY DIFFRACTION | 2.6 |
| 6EK2 | X-RAY DIFFRACTION | 2.65 |
| 5DFV | X-RAY DIFFRACTION | 2.8 |
| 6EJG | X-RAY DIFFRACTION | 2.82 |
| 5TCX | X-RAY DIFFRACTION | 2.96 |
| 5M4R | X-RAY DIFFRACTION | 3.1 |
| 7JIC | ELECTRON MICROSCOPY | 3.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P60033-F1 | 87.24 | 0.62 |
Antibody-complex structures (SAbDab): 6 — 5DFV, 5DFW, 6EJG, 6EJM, 6EK2, 6U9S
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 116 (important for interaction with integrin); 144 (important for interaction with integrin); 148 (important for interaction with integrin)
Ligand- & substrate-binding residues (1): 219
Disulfide bonds (2): 156–190, 157–175
Mutagenesis-validated functional residues (14):
| Position | Phenotype |
|---|---|
| 116 | reduces binding to integrin. |
| 119 | no effect on integrin binding. |
| 121 | no effect on integrin binding. |
| 124 | no effect on integrin binding. |
| 126 | no effect on integrin binding. |
| 144 | reduces binding to integrin; when associated with e-148. |
| 148 | reduces binding to integrin; when associated with e-144. |
| 186 | no effect on integrin binding. |
| 187 | no effect on integrin binding. |
| 188 | strongly reduced affinity for hcv protein e2; when associated with e-196. |
| 188 | mildly reduced affinity for hcv protein e2. |
| 196 | strongly reduced affinity for hcv protein e2; when associated with k-188 or q-188. |
| 196 | strongly reduced affinity for hcv protein e2. |
| 219 | reduced affinity for cholesterol binding. |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-198933 | Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
| R-HSA-977606 | Regulation of Complement cascade |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-166658 | Complement cascade |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
MSigDB gene sets: 619 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, GOBP_CELLULAR_RESPONSE_TO_LIPOPROTEIN_PARTICLE_STIMULUS, GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_B_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_REGULATION_OF_INFLAMMATORY_RESPONSE_TO_ANTIGENIC_STIMULUS, GOBP_POSITIVE_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, GOBP_SKELETAL_MUSCLE_TISSUE_REGENERATION, GOBP_REGULATION_OF_ALPHA_BETA_T_CELL_ACTIVATION, GOBP_MYELOID_LEUKOCYTE_MIGRATION, REACTOME_ADAPTIVE_IMMUNE_SYSTEM
GO Biological Process (31): immunological synapse formation (GO:0001771), humoral immune response mediated by circulating immunoglobulin (GO:0002455), positive regulation of inflammatory response to antigenic stimulus (GO:0002863), myoblast fusion involved in skeletal muscle regeneration (GO:0014905), positive regulation of B cell proliferation (GO:0030890), receptor internalization (GO:0031623), regulation of protein stability (GO:0031647), macrophage fusion (GO:0034238), CD4-positive, alpha-beta T cell costimulation (GO:0035783), positive regulation of MAPK cascade (GO:0043410), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of B cell receptor signaling pathway (GO:0050861), positive regulation of T cell receptor signaling pathway (GO:0050862), protein localization to lysosome (GO:0061462), positive regulation of protein exit from endoplasmic reticulum (GO:0070863), cellular response to low-density lipoprotein particle stimulus (GO:0071404), protein localization to plasma membrane (GO:0072659), osteoclast fusion (GO:0072675), positive regulation of receptor clustering (GO:1903911), positive regulation of protein catabolic process in the vacuole (GO:1904352), regulation of macrophage migration (GO:1905521), positive regulation of adaptive immune memory response (GO:1905676), positive regulation of T-helper 2 cell cytokine production (GO:2000553), positive regulation of CD4-positive, alpha-beta T cell proliferation (GO:2000563), positive regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell (GO:2001190), adaptive immune response (GO:0002250), immune system process (GO:0002376), regulation of cell population proliferation (GO:0042127), symbiont entry into host cell (GO:0046718), positive regulation of B cell activation (GO:0050871), regulation of cell motility (GO:2000145)
GO Molecular Function (8): virus receptor activity (GO:0001618), integrin binding (GO:0005178), cholesterol binding (GO:0015485), MHC class II protein complex binding (GO:0023026), MHC class II protein binding (GO:0042289), transferrin receptor binding (GO:1990459), protein binding (GO:0005515), lipid binding (GO:0008289)
GO Cellular Component (10): immunological synapse (GO:0001772), cytosol (GO:0005829), plasma membrane (GO:0005886), focal adhesion (GO:0005925), basal plasma membrane (GO:0009925), membrane (GO:0016020), basolateral plasma membrane (GO:0016323), vesicle (GO:0031982), extracellular exosome (GO:0070062), tetraspanin-enriched microdomain (GO:0097197)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Immune System | 2 |
| Adaptive Immune System | 1 |
| Complement cascade | 1 |
| Innate Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| syncytium formation by cell-cell fusion | 2 |
| positive regulation of antigen receptor-mediated signaling pathway | 2 |
| signaling receptor binding | 2 |
| binding | 2 |
| plasma membrane | 2 |
| plasma membrane region | 2 |
| cell-cell recognition | 1 |
| lymphocyte activation | 1 |
| humoral immune response | 1 |
| immunoglobulin mediated immune response | 1 |
| inflammatory response to antigenic stimulus | 1 |
| regulation of inflammatory response to antigenic stimulus | 1 |
| positive regulation of inflammatory response | 1 |
| positive regulation of immune response | 1 |
| myoblast fusion | 1 |
| myotube differentiation involved in skeletal muscle regeneration | 1 |
| skeletal muscle tissue regeneration | 1 |
| regulation of B cell proliferation | 1 |
| B cell proliferation | 1 |
| positive regulation of lymphocyte proliferation | 1 |
| positive regulation of B cell activation | 1 |
| receptor-mediated endocytosis | 1 |
| regulation of biological quality | 1 |
| T cell costimulation | 1 |
| positive regulation of CD4-positive, alpha-beta T cell activation | 1 |
| MAPK cascade | 1 |
| regulation of MAPK cascade | 1 |
| positive regulation of intracellular signal transduction | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| B cell receptor signaling pathway | 1 |
| regulation of B cell receptor signaling pathway | 1 |
| T cell receptor signaling pathway | 1 |
| regulation of T cell receptor signaling pathway | 1 |
| protein localization to vacuole | 1 |
| protein exit from endoplasmic reticulum | 1 |
| regulation of protein exit from endoplasmic reticulum | 1 |
| positive regulation of intracellular protein transport | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
172 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CD81 | psi-mi:“MI:0915”(physical association) | 0.840 | |
| TSPAN15 | ADAM10 | psi-mi:“MI:0914”(association) | 0.840 |
| CD81 | psi-mi:“MI:0407”(direct interaction) | 0.840 | |
| CD81 | psi-mi:“MI:0407”(direct interaction) | 0.840 | |
| CD81 | psi-mi:“MI:0915”(physical association) | 0.840 | |
| TSPAN5 | ADAM10 | psi-mi:“MI:0914”(association) | 0.800 |
| CD81 | PTGFRN | psi-mi:“MI:0914”(association) | 0.790 |
| CD9 | ADAM10 | psi-mi:“MI:0914”(association) | 0.750 |
| ADAM10 | CD9 | psi-mi:“MI:0914”(association) | 0.750 |
| CD81 | ADAM10 | psi-mi:“MI:0914”(association) | 0.740 |
| CD81 | ADAM10 | psi-mi:“MI:0915”(physical association) | 0.740 |
| CD81 | EGFR | psi-mi:“MI:0914”(association) | 0.600 |
| CD81 | STX1A | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD81 | TREX1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD81 | SLC26A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD81 | LBR | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD81 | BST2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD81 | PDZK1IP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (344): CD81 (Two-hybrid), TFR2 (Affinity Capture-Western), CD81 (Affinity Capture-Western), CD81 (Affinity Capture-RNA), CD81 (Two-hybrid), CD81 (PCA), CD81 (Affinity Capture-MS), ALCAM (Affinity Capture-MS), ANXA11 (Affinity Capture-MS), APOA1 (Affinity Capture-MS), APOE (Affinity Capture-MS), ATP1A1 (Affinity Capture-MS), C2orf72 (Affinity Capture-MS), CAPN5 (Affinity Capture-MS), CD151 (Affinity Capture-MS)
ESM2 similar proteins: O43657, O46101, O60635, O70352, O70401, O97703, P08962, P19075, P19331, P19397, P24485, P27591, P27701, P28648, P35762, P40237, P41731, P41732, P60033, P60034, P62079, P62080, Q17QJ5, Q26499, Q28709, Q2KIS9, Q32KU6, Q3T0S3, Q3ZCD0, Q4R7W6, Q4V8E0, Q58DM3, Q58DN3, Q5R9S6, Q5RAS5, Q5RC27, Q61451, Q62283, Q62745, Q68VK5
Diamond homologs: A0A8M2B5N2, A0A8V0ZLT4, B0BM39, B3VSC2, B5X3I6, O14817, O60635, O75954, O97703, P11049, P60033, P60034, Q06AA5, Q11098, Q26499, Q3T0S3, Q4R7W6, Q4V8E0, Q58CY8, Q5RAP3, Q5RC27, Q61470, Q6AYR9, Q6DCQ3, Q6GMK6, Q80WR1, Q8BJU2, Q922J6, Q96SJ8, Q99J59, Q9DCK3, A1L157, O35566, O60636, O70352, P19075, P24485, P27701, P40241, P48509
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 99 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| ER-Phagosome pathway | 6 | 11.4× | 2e-03 |
| Class A/1 (Rhodopsin-like receptors) | 8 | 8.7× | 9e-04 |
| Neutrophil degranulation | 14 | 4.8× | 5e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of cytosolic calcium ion concentration | 7 | 8.6× | 8e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
325 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 125 |
| Likely benign | 149 |
| Benign | 26 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1405 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:2377614:GG:G | donor_gain | 1.0000 |
| 11:2377615:GG:G | donor_gain | 1.0000 |
| 11:2377615:GGTA:G | donor_loss | 1.0000 |
| 11:2377616:G:GA | donor_loss | 1.0000 |
| 11:2390407:CCCA:C | acceptor_loss | 1.0000 |
| 11:2390408:CCA:C | acceptor_loss | 1.0000 |
| 11:2390409:CA:C | acceptor_loss | 1.0000 |
| 11:2390410:A:AC | acceptor_loss | 1.0000 |
| 11:2390410:A:AG | acceptor_gain | 1.0000 |
| 11:2390410:AGCT:A | acceptor_gain | 1.0000 |
| 11:2390411:G:GG | acceptor_gain | 1.0000 |
| 11:2390411:GC:G | acceptor_gain | 1.0000 |
| 11:2390411:GCT:G | acceptor_gain | 1.0000 |
| 11:2390411:GCTG:G | acceptor_gain | 1.0000 |
| 11:2390523:GTAG:G | donor_gain | 1.0000 |
| 11:2390525:AGG:A | donor_loss | 1.0000 |
| 11:2390527:G:GG | donor_gain | 1.0000 |
| 11:2390527:GT:G | donor_loss | 1.0000 |
| 11:2390528:T:A | donor_loss | 1.0000 |
| 11:2394089:C:CA | acceptor_gain | 1.0000 |
| 11:2394089:CGCAA:C | acceptor_loss | 1.0000 |
| 11:2394090:GCAAG:G | acceptor_loss | 1.0000 |
| 11:2394091:CAAG:C | acceptor_loss | 1.0000 |
| 11:2394092:A:AG | acceptor_gain | 1.0000 |
| 11:2394093:A:G | acceptor_gain | 1.0000 |
| 11:2394094:G:GA | acceptor_loss | 1.0000 |
| 11:2394094:G:GG | acceptor_gain | 1.0000 |
| 11:2394169:G:GT | donor_gain | 1.0000 |
| 11:2394188:GGACG:G | donor_gain | 1.0000 |
| 11:2394189:GACG:G | donor_gain | 1.0000 |
AlphaMissense
1557 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:2390418:G:A | G25R | 0.999 |
| 11:2390418:G:C | G25R | 0.999 |
| 11:2390419:G:A | G25E | 0.999 |
| 11:2390433:G:C | G30R | 0.999 |
| 11:2390434:G:A | G30D | 0.999 |
| 11:2390449:T:C | L35P | 0.999 |
| 11:2394118:G:C | G69R | 0.999 |
| 11:2394119:G:A | G69D | 0.999 |
| 11:2394139:G:C | G76R | 0.999 |
| 11:2394140:G:A | G76D | 0.999 |
| 11:2394148:G:C | G79R | 0.999 |
| 11:2394149:G:A | G79D | 0.999 |
| 11:2394157:G:T | G82W | 0.999 |
| 11:2394158:G:A | G82E | 0.999 |
| 11:2394972:T:C | F94L | 0.999 |
| 11:2394974:C:A | F94L | 0.999 |
| 11:2394974:C:G | F94L | 0.999 |
| 11:2394981:T:C | C97R | 0.999 |
| 11:2395002:T:C | C104R | 0.999 |
| 11:2395012:C:A | A107D | 0.999 |
| 11:2395015:C:A | A108D | 0.999 |
| 11:2395018:G:A | G109D | 0.999 |
| 11:2396814:T:G | M220R | 0.999 |
| 11:2396822:A:C | S223R | 0.999 |
| 11:2396824:C:A | S223R | 0.999 |
| 11:2396824:C:G | S223R | 0.999 |
| 11:2394107:T:A | L65H | 0.998 |
| 11:2394113:C:A | A67D | 0.998 |
| 11:2394157:G:A | G82R | 0.998 |
| 11:2394157:G:C | G82R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000018888 (11:2391973 C>T), RS1000045433 (11:2377012 C>G), RS1000131388 (11:2392198 T>C), RS1000250300 (11:2391628 T>A,G), RS1000324215 (11:2381990 C>T), RS1000407765 (11:2391489 G>A), RS1000428001 (11:2395747 C>A,T), RS1000481116 (11:2387285 G>A), RS1000516644 (11:2387184 C>T), RS1000544773 (11:2378002 C>T), RS1000584498 (11:2390729 A>C), RS1000616576 (11:2376828 C>G,T), RS1000650499 (11:2383286 A>G), RS1000691971 (11:2394917 G>C), RS1000968074 (11:2396243 C>G,T)
Disease associations
OMIM: gene MIM:186845 | disease phenotypes: MIM:613496
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| common variable immunodeficiency | Supportive | Autosomal dominant |
| immunodeficiency, common variable, 6 | Limited | Unknown |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| immunodeficiency, common variable, 6 | Limited | AR |
Mondo (2): immunodeficiency, common variable, 6 (MONDO:0013286), common variable immunodeficiency (MONDO:0015517)
Orphanet (1): OBSOLETE: Common variable immunodeficiency (Orphanet:1572)
HPO phenotypes
19 total (19 of 19 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000099 | Glomerulonephritis |
| HP:0000105 | Enlarged kidney |
| HP:0000126 | Hydronephrosis |
| HP:0000979 | Purpura |
| HP:0001973 | Autoimmune thrombocytopenia |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002240 | Hepatomegaly |
| HP:0002718 | Recurrent bacterial infections |
| HP:0002829 | Arthralgia |
| HP:0003774 | Stage 5 chronic kidney disease |
| HP:0010975 | Abnormal B cell count |
| HP:0011839 | Abnormal total T cell count |
| HP:0012476 | Decreased specific pneumococcal antibody level |
| HP:0012587 | Macroscopic hematuria |
| HP:0012593 | Nephrotic range proteinuria |
| HP:0032134 | Chronic decreased circulating total IgG |
| HP:0033295 | Mesangial Immune complex deposition |
| HP:0410295 | Complete or near-complete absence of specific antibody response to tetanus vaccine |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010725_20 | Malaria | 4.000000e-69 |
| GCST010725_33 | Malaria | 2.000000e-67 |
| GCST010725_51 | Malaria | 1.000000e-55 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D017074 | Common Variable Immunodeficiency | C20.673.330 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL1075180 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.68 | Kd | 21 | nM | ECHINOCYSTIC ACID |
| 7.42 | Kd | 37.8 | nM | CHEMBL4546270 |
| 7.41 | Kd | 39.2 | nM | CHEMBL4546270 |
| 7.18 | Kd | 66.5 | nM | CHEMBL4446488 |
PubChem BioAssay actives
4 with measured affinity, of 15 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (4aR,5R,6aR,6aS,6bR,8aR,10S,12aR,14bR)-5,10-dihydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid | 750450: Binding affinity to CD81 (unknown origin) | kd | 0.0210 | uM |
| (1S,2S,3R)-3-acetyl-2-[(E)-4-carboxypent-3-enyl]-2-methylcyclobutane-1-carboxylic acid | 1535566: Binding affinity to CD81 (unknown origin) by surface plasmon resonance assay | kd | 0.0378 | uM |
| (1S,2S,3R)-3-[(1S)-1-carboxy-1-hydroxyethyl]-2-[(E)-4-carboxypent-3-enyl]-2-methylcyclobutane-1-carboxylic acid | 1535566: Binding affinity to CD81 (unknown origin) by surface plasmon resonance assay | kd | 0.0665 | uM |
CTD chemical–gene interactions
65 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Air Pollutants | affects cotreatment, increases abundance, increases expression, affects methylation | 2 |
| Vehicle Emissions | decreases expression, increases abundance | 2 |
| Benzo(a)pyrene | affects methylation | 2 |
| Cadmium | increases expression, decreases reaction, increases abundance, increases palmitoylation | 2 |
| Doxorubicin | affects expression, increases expression | 2 |
| Plant Extracts | affects cotreatment, decreases expression, increases expression | 2 |
| Smoke | decreases expression, increases expression | 2 |
| Cadmium Chloride | decreases reaction, increases abundance, increases palmitoylation, increases expression | 2 |
| Particulate Matter | affects methylation, increases abundance, decreases expression | 2 |
| bisphenol F | increases expression, affects cotreatment | 1 |
| beauvericin | affects cotreatment, increases expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| bisphenol A | decreases methylation | 1 |
| sodium arsenate | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| ochratoxin A | increases acetylation, increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chloropicrin | decreases expression | 1 |
| enniatins | affects cotreatment, increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| eprenetapopt | increases expression, affects reaction | 1 |
| MT19c compound | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
ChEMBL screening assays
7 unique, capped per target: 7 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1099753 | Binding | Inhibition of human recombinant GST-tagged CD81 protein assessed as HCV E1E2 binding after 1 hr by Western blot analysis | Lamiridosins, hepatitis C virus entry inhibitors from Lamium album. — J Nat Prod |
Cellosaurus cell lines
18 cell lines: 15 cancer cell line, 2 transformed cell line, 1 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B7WL | Abcam Raji CD81 KO | Cancer cell line | Male |
| CVCL_B9X6 | Abcam THP-1 CD81 KO | Cancer cell line | Male |
| CVCL_C5RN | HepG2-CD81 | Cancer cell line | Male |
| CVCL_C5RP | HepG2/CD81++ | Cancer cell line | Male |
| CVCL_C6Z3 | Abcam PC-3 CD81 KO | Cancer cell line | Male |
| CVCL_D7M8 | Ubigene A-549 CD81 KO | Cancer cell line | Male |
| CVCL_D9BJ | Ubigene HEK293 CD81 KO | Transformed cell line | Female |
| CVCL_E8TN | CHO-CD81/SR-B1 | Spontaneously immortalized cell line | Female |
| CVCL_F1QN | HyCyte HMy2.C1R KO-hCD81 | Transformed cell line | Female |
| CVCL_SH91 | HAP1 CD81 (-) 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
42 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00520494 | PHASE4 | COMPLETED | Efficacy and Safety of Vivaglobin® in Previously Untreated Patients With Primary Immunodeficiency |
| NCT01289847 | PHASE4 | COMPLETED | A Study to Find Out How Safe and Effective Gammaplex® is in Young People With Primary Immunodeficiency |
| NCT01946906 | PHASE4 | COMPLETED | The Rifaximin Study in CVID |
| NCT05193552 | PHASE4 | RECRUITING | Usage of Spirometry in Managing IgG Therapy in CVID With Airway Disease |
| NCT00168012 | PHASE3 | COMPLETED | Efficacy and Safety of Intravenous Immunoglobulin IVIG-F10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00168025 | PHASE3 | COMPLETED | Efficacy and Safety of Intravenous Immunoglobulin IgPro10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00220766 | PHASE3 | COMPLETED | Rapid Infusion of Immune Globulin Intravenous (Human) In Primary Immunodeficiency Patients |
| NCT00322556 | PHASE3 | COMPLETED | Safety and Efficacy of Intravenous Immunoglobulin IgPro10 in Patients With Primary Immunodeficiencies (PID) |
| NCT00542997 | PHASE3 | COMPLETED | Study of Subcutaneous Immune Globulin in Patients Requiring IgG Replacement Therapy |
| NCT01884311 | PHASE3 | COMPLETED | Pharmacokinetics (PK) and Safety of Subgam-VF in Primary Immunodeficiency Diseases |
| NCT01963143 | PHASE3 | COMPLETED | Bioequivalence Study to Evaluate the Pharmacokinetics, Safety, and Tolerability of Gammaplex® 10 and Gammaplex® 5% in Primary Immunodeficiency Diseases |
| NCT02247141 | PHASE3 | COMPLETED | A Multi-centre Open Study to Assess the Safety and Efficacy of Subgam® |
| NCT01489618 | PHASE2 | TERMINATED | Prime Boost Vaccination Strategy Combining Conjugated Anti- Pneumococcal Vaccine (s0) and Polysaccharide Anti- Pneumococcal Vaccine (s4) Compared to Polysaccharide Anti- Pneumococcal Vaccine Alone (s4) In Patients With Common Variable Immunodeficiency |
| NCT01821781 | PHASE2 | ACTIVE_NOT_RECRUITING | Immune Disorder HSCT Protocol |
| NCT02579967 | PHASE2 | RECRUITING | Pilot Trial of Allogeneic Blood or Marrow Transplantation for Primary Immunodeficiencies |
| NCT03663933 | PHASE2 | ACTIVE_NOT_RECRUITING | Allogeneic Hematopoietic Cell Transplantation for Disorders of T-cell Proliferation and/or Dysregulation |
| NCT04339777 | PHASE2 | RECRUITING | Allogeneic Hematopoietic Stem Cell Transplant for Patients With Inborn Errors of Immunity |
| NCT04925375 | PHASE2 | RECRUITING | Abatacept for the Treatment of Common Variable Immunodeficiency With Interstitial Lung Disease |
| NCT05593588 | PHASE2 | ENROLLING_BY_INVITATION | Senolytics Treatment of Interstitial Lung Disease in Common Variable Immunodeficiency |
| NCT06897358 | PHASE2 | ACTIVE_NOT_RECRUITING | Leniolisib for Immune Dysregulation in CVID |
| NCT07284641 | PHASE2 | RECRUITING | Hematopoietic Stem Cell Transplantation (HSCT) for Common Variable Immunodeficiency (CVID) and Other Autoimmune Manifestations of Primary Immune Regulatory Disorders (PIRD) |
| NCT00263237 | PHASE1 | COMPLETED | STA-5326 Meslylate to Treat Gut Inflammation Associated With Common Variable Immunodeficiency |
| NCT01852370 | PHASE1/PHASE2 | ENROLLING_BY_INVITATION | Sequential Cadaveric Lung and Bone Marrow Transplant for Immune Deficiency Diseases |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT00004695 | Not specified | COMPLETED | Randomized Study of Polyethylene-Glycol-Conjugated Interleukin 2 in Patients With Common Variable Immunodeficiency |
| NCT00006054 | Not specified | TERMINATED | Allogeneic Bone Marrow Transplantation in Patients With Primary Immunodeficiencies |
| NCT00015431 | Not specified | COMPLETED | Immune System and Gut Abnormalities in Patients With Common Variable Immunodeficiency With and Without Gastrointestinal Symptoms |
| NCT00661401 | Not specified | COMPLETED | Specific IgG Antibody in Patients With Primary Antibody Deficiencies Treated With Subcutaneous Immunoglobulin |
| NCT00943514 | Not specified | RECRUITING | Natural History of Bronchiectasis |
| NCT01196702 | Not specified | COMPLETED | Lymphocyte Immunophenotyping in Common Variable Immunodeficiency |
| NCT01652092 | Not specified | ACTIVE_NOT_RECRUITING | Allogeneic Hematopoietic Stem Cell Transplant for Patients With Primary Immune Deficiencies |
| NCT01981785 | Not specified | UNKNOWN | Investigation of Immune Disorders and Deficiencies |
| NCT02960399 | Not specified | TERMINATED | Assessment of Immunogenicity of Zostavax® in Patients With Antibody Deficiency 60 Years of Age and Older |
| NCT03188419 | Not specified | COMPLETED | Breadth of Donor Options for People With Inherited Diseases Requiring Allogeneic Hematopoietic Stem Cell Transplant in the Era of Alternative Donor Transplants Using Post-Transplantation Cyclophosphamide |
| NCT03211689 | Not specified | COMPLETED | The Impact of Exercise on Stress, Fatigue, and Quality of Life in Individuals With Primary Immunodeficiency Disease |
| NCT03534479 | Not specified | COMPLETED | Human IgGs and Endothelial Function in Vivo in Humans |
| NCT05310604 | Not specified | COMPLETED | Early Detection of Primary Antibody Deficiencies in Primary Care Facilities by an Algorithm Driven Selection of Serologic Testing in Individuals at Risk. |
| NCT05321407 | Not specified | ACTIVE_NOT_RECRUITING | COVID-19 Vaccine Responses in PIDD Subjects |
| NCT05481554 | Not specified | UNKNOWN | Composition and Function of Gut Microbiota in Porto-sinusoidal Vascular Disease Associated With Variable Common Immunodeficiency |
| NCT06145100 | Not specified | COMPLETED | Prediction of Portal Hypertension in Patients With CVID (CVID-pHT) |
Related Atlas pages
- Associated diseases: immunodeficiency, common variable, 6, common variable immunodeficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): common variable immunodeficiency, immunodeficiency, common variable, 6