CDC20-DT

Summary

CDC20-DT (CDC20 divergent transcript, HGNC:55681) is a long non-coding RNA gene on chromosome 1p34.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55681
Approved symbol	CDC20-DT
Name	CDC20 divergent transcript
Location	1p34.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234694
Ensembl biotype	lncRNA
Entrez	105378687
RNAcentral	URS00026A20EB — lncRNA, 743 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000424948, ENST00000743559, ENST00000743560, ENST00000743562, ENST00000743563, ENST00000743564, ENST00000743565, ENST00000743566, ENST00000743567, ENST00000743568, ENST00000743569, ENST00000743570, ENST00000743571, ENST00000743572, ENST00000743573, ENST00000743574, ENST00000743575, ENST00000743576, ENST00000743577, ENST00000743578, ENST00000743579, ENST00000743580, ENST00000743581

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424948 — 3 exons

Exon	Start	End
ENSE00001773578	43357803	43357900
ENSE00004082058	43354683	43355006
ENSE00004082072	43358419	43358810

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 81.92.

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.92	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.46	silver quality
sural nerve	UBERON:0015488	77.01	gold quality
mucosa of transverse colon	UBERON:0004991	71.00	gold quality
right testis	UBERON:0004534	68.75	gold quality
lower esophagus mucosa	UBERON:0035834	68.73	gold quality
right uterine tube	UBERON:0001302	68.70	gold quality
left testis	UBERON:0004533	68.41	gold quality
testis	UBERON:0000473	68.26	gold quality
bone marrow cell	CL:0002092	68.06	silver quality
right lobe of thyroid gland	UBERON:0001119	67.93	gold quality
left lobe of thyroid gland	UBERON:0001120	67.81	gold quality
pancreas	UBERON:0001264	67.81	gold quality
thyroid gland	UBERON:0002046	67.78	gold quality
muscle tissue	UBERON:0002385	67.72	gold quality
body of pancreas	UBERON:0001150	67.68	gold quality
islet of Langerhans	UBERON:0000006	67.51	gold quality
duodenum	UBERON:0002114	66.54	gold quality
skin of abdomen	UBERON:0001416	66.11	gold quality
thoracic mammary gland	UBERON:0005200	66.06	gold quality
subcutaneous adipose tissue	UBERON:0002190	65.98	gold quality
zone of skin	UBERON:0000014	65.82	gold quality
skin of leg	UBERON:0001511	65.67	gold quality
adult mammalian kidney	UBERON:0000082	65.63	gold quality
colonic epithelium	UBERON:0000397	65.40	silver quality
kidney	UBERON:0002113	65.37	gold quality
skeletal muscle tissue	UBERON:0001134	65.13	gold quality
rectum	UBERON:0001052	65.09	gold quality
apex of heart	UBERON:0002098	65.06	gold quality
adipose tissue	UBERON:0001013	64.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.02

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.