CDC42EP3-AS1

Summary

CDC42EP3-AS1 (CDC42EP3 antisense RNA 1, HGNC:56370) is a long non-coding RNA gene on chromosome 2p22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56370
Approved symbol	CDC42EP3-AS1
Name	CDC42EP3 antisense RNA 1
Location	2p22.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC006369.1
Ensembl gene	ENSG00000236213
Ensembl biotype	lncRNA
Entrez	127379718
RNAcentral	URS0002A5D12E — lncRNA, 2097 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 145 — 145 lncRNA

ENST00000419425, ENST00000659653, ENST00000668683, ENST00000686061, ENST00000689279, ENST00000689395, ENST00000689928, ENST00000690322, ENST00000692480, ENST00000702971, ENST00000703028, ENST00000715737, ENST00000751609, ENST00000751610, ENST00000751611, ENST00000751612, ENST00000751613, ENST00000751614, ENST00000751615, ENST00000751616, ENST00000751617, ENST00000751618, ENST00000751619, ENST00000751620, ENST00000751621, ENST00000751622, ENST00000751623, ENST00000751624, ENST00000751625, ENST00000751626, ENST00000751627, ENST00000751628, ENST00000751629, ENST00000751630, ENST00000751631, ENST00000751632, ENST00000751633, ENST00000751634, ENST00000751635, ENST00000751636, ENST00000751637, ENST00000751639, ENST00000751640, ENST00000751641, ENST00000751642, ENST00000751643, ENST00000751644, ENST00000751645, ENST00000751646, ENST00000751647, ENST00000751648, ENST00000751649, ENST00000751650, ENST00000751651, ENST00000751652, ENST00000751653, ENST00000751654, ENST00000751655, ENST00000751656, ENST00000751657, ENST00000751658, ENST00000751659, ENST00000751660, ENST00000751661, ENST00000751662, ENST00000751663, ENST00000751664, ENST00000751665, ENST00000751666, ENST00000751667, ENST00000751668, ENST00000751669, ENST00000751670, ENST00000751671, ENST00000751672, ENST00000751673, ENST00000751674, ENST00000751675, ENST00000751676, ENST00000751677, ENST00000751678, ENST00000751679, ENST00000751680, ENST00000751681, ENST00000751682, ENST00000751683, ENST00000751684, ENST00000751685, ENST00000751686, ENST00000751687, ENST00000751688, ENST00000751689, ENST00000751690, ENST00000751691, ENST00000751692, ENST00000751693, ENST00000751694, ENST00000751695, ENST00000751696, ENST00000751697, ENST00000751698, ENST00000751699, ENST00000751700, ENST00000751701, ENST00000751702, ENST00000751703, ENST00000751704, ENST00000751705, ENST00000751706, ENST00000751707, ENST00000751708, ENST00000751709, ENST00000751710, ENST00000751711, ENST00000751712, ENST00000751713, ENST00000751714, ENST00000751715, ENST00000751716, ENST00000751717, ENST00000751718, ENST00000751719, ENST00000751720, ENST00000751721, ENST00000751722, ENST00000751723, ENST00000751724, ENST00000751725, ENST00000751726, ENST00000751727, ENST00000751728, ENST00000751729, ENST00000751730, ENST00000751731, ENST00000751732, ENST00000751733, ENST00000751734, ENST00000751735, ENST00000751736, ENST00000751737, ENST00000751738, ENST00000751739, ENST00000751740, ENST00000751741, ENST00000751742

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419425 — 5 exons

Exon	Start	End
ENSE00001702419	37642741	37642927
ENSE00001742638	37646676	37646698
ENSE00001766089	37600136	37600362
ENSE00001771668	37644417	37644441
ENSE00001791377	37612173	37612258

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 84.78.

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
islet of Langerhans	UBERON:0000006	84.78	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.47	silver quality
granulocyte	CL:0000094	75.83	gold quality
blood	UBERON:0000178	70.42	gold quality
lymph node	UBERON:0000029	68.57	gold quality
colonic epithelium	UBERON:0000397	67.71	silver quality
pancreas	UBERON:0001264	66.50	gold quality
ganglionic eminence	UBERON:0004023	65.97	gold quality
bone marrow cell	CL:0002092	65.42	silver quality
right uterine tube	UBERON:0001302	64.37	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.19	gold quality
spleen	UBERON:0002106	63.74	gold quality
skeletal muscle tissue	UBERON:0001134	63.20	silver quality
bone marrow	UBERON:0002371	62.53	gold quality
tonsil	UBERON:0002372	62.50	gold quality
liver	UBERON:0002107	62.47	gold quality
vermiform appendix	UBERON:0001154	61.43	gold quality
right lobe of liver	UBERON:0001114	60.89	gold quality
leukocyte	CL:0000738	58.08	gold quality
gall bladder	UBERON:0002110	57.08	gold quality
body of pancreas	UBERON:0001150	55.47	gold quality
duodenum	UBERON:0002114	54.99	gold quality
small intestine	UBERON:0002108	54.90	gold quality
small intestine Peyer’s patch	UBERON:0003454	54.79	gold quality
prefrontal cortex	UBERON:0000451	54.60	gold quality
mucosa of transverse colon	UBERON:0004991	54.37	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.37	gold quality
fundus of stomach	UBERON:0001160	53.73	gold quality
fallopian tube	UBERON:0003889	53.60	gold quality
stomach	UBERON:0000945	52.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.83

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.