CDC73
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Also known as parafibrominFIHP
Summary
CDC73 (cell division cycle 73, HGNC:16783) is a protein-coding gene on chromosome 1q31.2, encoding Parafibromin (Q6P1J9). Tumor suppressor probably involved in transcriptional and post-transcriptional control pathways. It is a common-essential gene (DepMap: required in 98.7% of cancer cell lines) and haploinsufficient (ClinGen: sufficient evidence).
This gene encodes a tumor suppressor that is involved in transcriptional and post-transcriptional control pathways. The protein is a component of the the PAF protein complex, which associates with the RNA polymerase II subunit POLR2A and with a histone methyltransferase complex. This protein appears to facilitate the association of 3’ mRNA processing factors with actively-transcribed chromatin. Mutations in this gene have been linked to hyperparathyroidism-jaw tumor syndrome, familial isolated hyperparathyroidism, and parathyroid carcinoma.
Source: NCBI Gene 79577 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hyperparathyroidism 2 with jaw tumors (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 7
- Clinical variants (ClinVar): 1,986 total — 141 pathogenic, 31 likely-pathogenic
- Phenotypes (HPO): 51
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer driver (intOGen): activating (oncogene-like) across 1 cancer types
- Cancer dependency (DepMap): dependent in 98.7% of screened cell lines (common-essential)
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_024529
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16783 |
| Approved symbol | CDC73 |
| Name | cell division cycle 73 |
| Location | 1q31.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | parafibromin, FIHP |
| Ensembl gene | ENSG00000134371 |
| Ensembl biotype | protein_coding |
| OMIM | 607393 |
| Entrez | 79577 |
Gene structure
Transcript identifiers
Ensembl transcripts: 21 — 9 protein_coding, 7 protein_coding_CDS_not_defined, 5 nonsense_mediated_decay
ENST00000367435, ENST00000477868, ENST00000482484, ENST00000635846, ENST00000643006, ENST00000643784, ENST00000647662, ENST00000648071, ENST00000649606, ENST00000649613, ENST00000649706, ENST00000649895, ENST00000650197, ENST00000713651, ENST00000713652, ENST00000864170, ENST00000864171, ENST00000916534, ENST00000958309, ENST00000958310, ENST00000958311
RefSeq mRNA: 1 — MANE Select: NM_024529
NM_024529
CCDS: CCDS1382
Canonical transcript exons
ENST00000367435 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000914553 | 193147867 | 193147965 |
| ENSE00000914555 | 193150304 | 193150382 |
| ENSE00000995910 | 193141850 | 193142066 |
| ENSE00002208937 | 193203795 | 193203852 |
| ENSE00002267887 | 193152380 | 193152444 |
| ENSE00002270543 | 193212065 | 193212100 |
| ENSE00002310203 | 193236256 | 193236356 |
| ENSE00002421874 | 193212390 | 193212477 |
| ENSE00003497095 | 193125112 | 193125217 |
| ENSE00003508580 | 193135537 | 193135589 |
| ENSE00003613711 | 193130174 | 193130243 |
| ENSE00003639503 | 193249730 | 193249871 |
| ENSE00003641635 | 193135391 | 193135453 |
| ENSE00003643291 | 193138085 | 193138173 |
| ENSE00003837931 | 193122031 | 193122331 |
| ENSE00004020585 | 193232993 | 193233154 |
| ENSE00004020587 | 193250676 | 193254815 |
Expression profiles
Bgee: expression breadth ubiquitous, 271 present calls, max score 95.14.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 50.9332 / max 728.8657, expressed in 1821 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 7480 | 39.6076 | 1819 |
| 7481 | 8.1879 | 1678 |
| 7482 | 2.0776 | 1122 |
| 7483 | 0.5273 | 231 |
| 7479 | 0.3208 | 148 |
| 7478 | 0.2120 | 98 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 95.14 | gold quality |
| sural nerve | UBERON:0015488 | 94.85 | gold quality |
| colonic epithelium | UBERON:0000397 | 92.79 | gold quality |
| tendon | UBERON:0000043 | 91.68 | gold quality |
| monocyte | CL:0000576 | 91.35 | gold quality |
| adrenal tissue | UBERON:0018303 | 91.32 | gold quality |
| ventricular zone | UBERON:0003053 | 91.00 | gold quality |
| mononuclear cell | CL:0000842 | 90.97 | gold quality |
| islet of Langerhans | UBERON:0000006 | 90.96 | gold quality |
| stromal cell of endometrium | CL:0002255 | 90.76 | gold quality |
| leukocyte | CL:0000738 | 90.57 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.47 | gold quality |
| cauda epididymis | UBERON:0004360 | 88.40 | gold quality |
| heart right ventricle | UBERON:0002080 | 88.32 | gold quality |
| popliteal artery | UBERON:0002250 | 88.17 | gold quality |
| tibial artery | UBERON:0007610 | 88.15 | gold quality |
| amniotic fluid | UBERON:0000173 | 87.94 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 87.88 | gold quality |
| corpus callosum | UBERON:0002336 | 87.87 | gold quality |
| medial globus pallidus | UBERON:0002477 | 87.35 | gold quality |
| gall bladder | UBERON:0002110 | 87.32 | gold quality |
| tonsil | UBERON:0002372 | 87.05 | gold quality |
| rectum | UBERON:0001052 | 86.98 | gold quality |
| cartilage tissue | UBERON:0002418 | 86.70 | gold quality |
| bone marrow | UBERON:0002371 | 86.61 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 86.61 | gold quality |
| gastrocnemius | UBERON:0001388 | 86.60 | gold quality |
| aorta | UBERON:0000947 | 86.54 | gold quality |
| muscle of leg | UBERON:0001383 | 86.43 | gold quality |
| ganglionic eminence | UBERON:0004023 | 86.28 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.63 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| MYC | Repression |
Upstream regulators (CollecTRI, top): HMGA2, MYC, WT1
miRNA regulators (miRDB)
214 targeting CDC73, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 98.7% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 40)
- This gene is now identified as associated with the hyperparathyroidism-jaw tumor syndrome. (PMID:12434154)
- It is hypothesised that HRPT2 mutation is an early event that may lead to parathyroid malignancy and suggest intragenic mutation of HRPT2 as a marker of malignant potential in both familial and sporadic parathyroid tumours. (PMID:12960210)
- among 32 familial isolated hyperparathyroidism families, only a single one was found to have a mutation in parafibromin (HRPT2) gene (PMID:14715834)
- genotype phenotype analysis in familial isolated hyperparathyroidism (PMID:14985373)
- mutations in the HRPT2 gene are likely to be associated with parathyroid tumourigenesis; DNA mutational analysis in familial isolated hyperparathyroidism (PMID:14985403)
- Missense Mutation in HRPT2 is associated with Hyperparathyroidism Jaw-tumor syndrome. (PMID:15046050)
- Mutations in HRPT2 is associated with Hyperparathyroidism Jaw-tumor syndrome. (PMID:15046094)
- Mutations in HRPT2 is associated with Hyperparathyroidism Jaw-tumor syndrome. (PMID:15046098)
- Mutations in HRPT2 is associated with Hyperparathyroidism Jaw-tumor syndrome. (PMID:15046102)
- Mutations in HRPT2 is associated with Hyperparathyroidism Jaw-tumor syndrome. (PMID:15046105)
- Mutations in HRPT2 is associated with Hyperparathyroidism Jaw-tumor syndrome. (PMID:15046107)
- Mutations in HRPT2 is associated with Hyperparathyroidism Jaw-tumor syndrome. (PMID:15046109)
- Patients shared common haplotype of seven markers spannning approximately 12.5-cM region, flanked centromerically by D1S202 and telomerically by D1S306. A 2-bp (TG or GT) frameshift deletion in exon 8, which predicts a truncated parafibromin protein. (PMID:15070940)
- Human parafibromin is a nucleocytoplasmic tumor suppressor protein which regulates cyclin D1/PRAD1 expression. (PMID:15580289)
- Mutation of HRPT2 is associated with the formation of parathyroid tumors in hyperparathyroidism-jaw tumor syndrome. (PMID:15613436)
- By purifying cellular parafibromin and characterizing its associated proteins, a human counterpart to the yeast Paf1 complex including homologs of Leo1, Paf1, and Ctr9, has been described. (PMID:15632063)
- findings link the tumor suppressor parafibromin to the transcription elongation and RNA processing pathway as a PAF1 complex- and RNA polymerase II-bound protein. (PMID:15923622)
- HRPT2 inactivation is not an important participant in the pathogenesis of typical parathyroid adenomas. (PMID:15956079)
- A non-consensus (non-canonical) donor splice site within exon 1 of the HRPT2 gene is associated with familial isolated primary hyperparathyroidism (FIHP). (PMID:16061557)
- specific HRPT2 mutations identified in HPT-JT or sporadic parathyroid carcinoma predicted to truncate parafibromin upstream of or within this NLS disrupt nuclear localization (PMID:16116486)
- mutation in exon 1 (nt 20AGGACG –> GGGAG) is predicted to inactivate the parafibromin protein through protein truncation and premature termination of translation (PMID:16448924)
- Data show that Drosophila Hyrax and its human ortholog, Parafibromin, are required for nuclear transduction of the Wnt/Wg signal and bind directly to the C-terminal region of beta-catenin/Armadillo. (PMID:16630820)
- The presented data suggest that in the majority of benign parathyroid tumours the expression of parafibromin remains unaltered, while the loss of parafibromin expression is strongly indicative of gene inactivation through mutation of the HRPT2 gene. (PMID:16728578)
- parafibromin has a critical role in cell growth, and mutations in HRPT2 can directly inhibit this role (PMID:16989776)
- renal cancer-associated mutations in parafibromin occur in the absence of von Hippel-Lindau mutation (PMID:17130827)
- The molecular basis for HPT has been further elucidated by teh detection of inactivating germline mutations in the CaSR gene in familial hypocalciuric hypercalcemia syndrome and in the HRPT-2 genes in the familial forms of HPT. (PMID:17138574)
- These experiments identify for the first time a proapoptotic activity of endogenous parafibromin likely to be important in its role as a tumor suppressor and show a functional role for the NLS of parafibromin in this activity. (PMID:17314275)
- Acts as a positive regulator of cell growth similar to an oncoprotein in the presence of Simian virus 40 large T antigen. (PMID:17404568)
- These results suggest that not only HRPT2 but also MEN1 mutations may play a role in sporadic parathyroid cancer formation. (PMID:17555500)
- Three identified NoLSs play only a minor role in nuclear localization, but are critical for the nucleolar localization of parafibromin. (PMID:17923126)
- Downregulated parafibromin expression possibly contributed to pathogenesis, growth, invasion and metastasis of gastric carcinomas. (PMID:18080135)
- loss of HRPT2 gene expression is strongly associated with parathyroid carcinomas. (PMID:18217513)
- inactivating mutations and/or allelic loss of the HRPT2 gene may not play a major role in parathyroid carcinogenesis in secondary HPT due to CKD (PMID:18338208)
- germline mutations with familial hyperparathyroidism associated with 80% recurrence/persistence rate, increasingly difficult re-operations and risk of parathyroid carcinoma (PMID:18436011)
- Parafibromin interacted with muscle alpha-actinins (actinin-2 and actinin-3). (PMID:18687124)
- CDC73 germline mutations are responsible for more than half of cases of hyperparathyroidism-jaw tumor syndrome. (PMID:18755853)
- The parafibromin tumor suppressor protein HRPT2 inhibits cell proliferation by repression of the c-myc proto-oncogene (PMID:18987311)
- Positive staining for PGP9.5 has utility as a marker for parathyroid malignancy, with a slightly superior sensitivity (P = 0.03) and similar high specificity to that of parafibromin. (PMID:19017757)
- A variety of genetic abnormalities, including HRPT2 mutations, occur in parathyroid carcinomas. (PMID:19058032)
- parathyroid carcinoma may be a manifestation of HRPT2 germline mutations (PMID:19081034)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cdc73 | ENSDARG00000020201 |
| mus_musculus | Cdc73 | ENSMUSG00000026361 |
| rattus_norvegicus | Cdc73 | ENSRNOG00000003258 |
| drosophila_melanogaster | CG6220 | FBGN0033865 |
| caenorhabditis_elegans | WBGENE00018064 |
Protein
Protein identifiers
Parafibromin — Q6P1J9 (reviewed: Q6P1J9)
Alternative names: Cell division cycle protein 73 homolog, Hyperparathyroidism 2 protein
All UniProt accessions (8): A0A1B0GUB2, A0A2R8Y640, A0A2R8YHB3, A0A3B3IRP5, A0A3B3ISN2, A0AAQ5BGL0, Q6P1J9, A0AAQ5BGL4
UniProt curated annotations — full annotation on UniProt →
Function. Tumor suppressor probably involved in transcriptional and post-transcriptional control pathways. May be involved in cell cycle progression through the regulation of cyclin D1/PRAD1 expression. Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and ‘Ser-2’- and ‘Ser-5’-phosphorylated forms and is involved in transcriptional elongation, acting both independently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of KMT2A/MLL1; it promotes leukemogenesis through association with KMT2A/MLL1-rearranged oncoproteins, such as KMT2A/MLL1-MLLT3/AF9 and KMT2A/MLL1-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 ‘Lys-4’ (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of ‘Lys-120’ of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3’ end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Connects PAF1C with the cleavage and polyadenylation specificity factor (CPSF) complex and the cleavage stimulation factor (CSTF) complex, and with Wnt signaling. Involved in polyadenylation of mRNA precursors.
Subunit / interactions. Component of the PAF1 complex, which consists of CDC73, PAF1, LEO1, CTR9, RTF1 and SKIC8. The PAF1 complex interacts with PHF5A. Within the PAF1 complex interacts directly with PHF5A. Interacts with POLR2A, CPSF1, CPSF4, CSTF2, KMT2A/MLL1 and CTNNB1. Interacts with a Set1-like complex that has histone methyltransferase activity and methylates histone H3. Found in a complex with BCL9L or BCL9, CDC73, CTNNB1 and PYGO1 indicative for the participation in a nuclear Wnt signaling complex. Interacts with PTPN11. Interacts with SETD5. (Microbial infection) The PAF1 complex interacts with Zika virus French Polynesia 10087PF/2013 non-structural protein 5/NS5. The interaction with viral NS5 proteins may reduce the antiviral immune response by inhibiting the recruitment of the PAF1 complex to interferon-stimulated genes, thus preventing their transcription. (Microbial infection) The PAF1 complex interacts with Dengue virus DENV2 16681 non-structural protein 5/NS5. The PAF1 complex interacts with Dengue virus DENV4 Dominica/814669/1981 non-structural protein 5/NS5. The interaction with viral NS5 proteins may reduce the antiviral immune response by inhibiting the recruitment of the PAF1 complex to interferon-stimulated genes, thus preventing their transcription.
Subcellular location. Nucleus.
Tissue specificity. Found in adrenal and parathyroid glands, kidney and heart.
Post-translational modifications. Phosphorylated. Dephosphorylated by PTPN11.
Disease relevance. Hyperparathyroidism 1 (HRPT1) [MIM:145000] An autosomal dominant disorder characterized by hypercalcemia, elevated parathyroid hormone (PTH) levels, and uniglandular or multiglandular parathyroid hyperplasia, adenomas, and carcinomas. The disease is caused by variants affecting the gene represented in this entry. Hyperparathyroidism 2 with jaw tumors (HRPT2) [MIM:145001] An autosomal dominant neoplasia syndrome characterized by primary hyperparathyroidism, ossifying fibroma of the maxilla and/or mandible, renal tumor, and uterine tumors. It is associated with increased risk of parathyroid cancer. The disease is caused by variants affecting the gene represented in this entry. Parathyroid carcinoma (PRTC) [MIM:608266] These cancers characteristically result in more profound clinical manifestations of hyperparathyroidism than do parathyroid adenomas, the most frequent cause of primary hyperparathyroidism. Early en bloc resection of the primary tumor is the only curative treatment. The gene represented in this entry is involved in disease pathogenesis.
Similarity. Belongs to the CDC73 family.
RefSeq proteins (1): NP_078805* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR007852 | Cdc73/Parafibromin | Family |
| IPR031336 | CDC73_C | Domain |
| IPR032041 | Cdc73_N | Domain |
| IPR038103 | CDC73_C_sf | Homologous_superfamily |
Pfam: PF05179, PF16050
UniProt features (42 total): sequence variant 12, helix 7, strand 5, cross-link 4, region of interest 4, sequence conflict 3, modified residue 2, initiator methionine 1, chain 1, turn 1, short sequence motif 1, compositionally biased region 1
Structure
Experimental structures (PDB)
20 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5YDE | X-RAY DIFFRACTION | 1.02 |
| 5YDF | X-RAY DIFFRACTION | 1.4 |
| 9HVQ | ELECTRON MICROSCOPY | 2 |
| 9MLC | ELECTRON MICROSCOPY | 2.4 |
| 7OOP | ELECTRON MICROSCOPY | 2.9 |
| 9EGX | ELECTRON MICROSCOPY | 2.9 |
| 9EGY | ELECTRON MICROSCOPY | 2.9 |
| 9EGZ | ELECTRON MICROSCOPY | 2.9 |
| 7OPC | ELECTRON MICROSCOPY | 3 |
| 7OPD | ELECTRON MICROSCOPY | 3 |
| 7UNC | ELECTRON MICROSCOPY | 3 |
| 7UND | ELECTRON MICROSCOPY | 3 |
| 6TED | ELECTRON MICROSCOPY | 3.1 |
| 9EH2 | ELECTRON MICROSCOPY | 3.1 |
| 8A3Y | ELECTRON MICROSCOPY | 3.3 |
| 9EH0 | ELECTRON MICROSCOPY | 3.6 |
| 9RTT | ELECTRON MICROSCOPY | 4.01 |
| 9S3G | ELECTRON MICROSCOPY | 6.4 |
| 9S0U | ELECTRON MICROSCOPY | 6.72 |
| 9RZE | ELECTRON MICROSCOPY | 8.53 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6P1J9-F1 | 73.94 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6): 198, 301, 308, 321, 2, 212
Function
Pathways and Gene Ontology
Reactome pathways
17 pathways
| ID | Pathway |
|---|---|
| R-HSA-112382 | Formation of RNA Pol II elongation complex |
| R-HSA-201722 | Formation of the beta-catenin:TCF transactivating complex |
| R-HSA-5632684 | Hedgehog ‘on’ state |
| R-HSA-674695 | RNA Polymerase II Pre-transcription Events |
| R-HSA-75955 | RNA Polymerase II Transcription Elongation |
| R-HSA-8866654 | E3 ubiquitin ligases ubiquitinate target proteins |
| R-HSA-9920588 | Dengue virus activates/modulates innate and adaptive immune responses |
| R-HSA-9943411 | CHD1 and CHD2 subfamily |
| R-HSA-162582 | Signal Transduction |
| R-HSA-195721 | Signaling by WNT |
| R-HSA-201681 | TCF dependent signaling in response to WNT |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-5358351 | Signaling by Hedgehog |
| R-HSA-597592 | Post-translational protein modification |
| R-HSA-73857 | RNA Polymerase II Transcription |
| R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-8852135 | Protein ubiquitination |
MSigDB gene sets: 444 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, GOBP_NEGATIVE_REGULATION_OF_EPITHELIAL_CELL_PROLIFERATION, MORF_ITGA2, PAX4_01, MORF_MSH3, GOBP_CELLULAR_RESPONSE_TO_LIPID, GOBP_FORMATION_OF_PRIMARY_GERM_LAYER, GOBP_POSITIVE_REGULATION_OF_MRNA_PROCESSING, GCANCTGNY_MYOD_Q6, GOBP_CELLULAR_RESPONSE_TO_BIOTIC_STIMULUS, SP3_Q3, MORF_BRCA1, MATTIOLI_MGUS_VS_PCL, GOBP_CELL_CYCLE_PHASE_TRANSITION, GEORGES_CELL_CYCLE_MIR192_TARGETS
GO Biological Process (21): negative regulation of transcription by RNA polymerase II (GO:0000122), regulation of cell growth (GO:0001558), endodermal cell fate commitment (GO:0001711), transcription elongation by RNA polymerase II (GO:0006368), negative regulation of cell population proliferation (GO:0008285), Wnt signaling pathway (GO:0016055), stem cell population maintenance (GO:0019827), positive regulation of Wnt signaling pathway (GO:0030177), mRNA 3’-end processing (GO:0031124), positive regulation of mRNA 3’-end processing (GO:0031442), protein destabilization (GO:0031648), positive regulation of transcription elongation by RNA polymerase II (GO:0032968), negative regulation of apoptotic process (GO:0043066), negative regulation of myeloid cell differentiation (GO:0045638), positive regulation of transcription by RNA polymerase II (GO:0045944), negative regulation of fibroblast proliferation (GO:0048147), negative regulation of epithelial cell proliferation (GO:0050680), cellular response to lipopolysaccharide (GO:0071222), positive regulation of cell cycle G1/S phase transition (GO:1902808), negative regulation of G1/S transition of mitotic cell cycle (GO:2000134), regulation of transcription by RNA polymerase II (GO:0006357)
GO Molecular Function (2): RNA polymerase II complex binding (GO:0000993), protein binding (GO:0005515)
GO Cellular Component (5): chromosome, telomeric region (GO:0000781), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytosol (GO:0005829), Cdc73/Paf1 complex (GO:0016593)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| RNA Polymerase II Transcription | 2 |
| Signal Transduction | 2 |
| RNA Polymerase II Transcription Elongation | 1 |
| TCF dependent signaling in response to WNT | 1 |
| Signaling by Hedgehog | 1 |
| Protein ubiquitination | 1 |
| Dengue Virus-Host Interactions | 1 |
| CHD chromatin remodelers | 1 |
| Signaling by WNT | 1 |
| Metabolism of proteins | 1 |
| Gene expression (Transcription) | 1 |
| Post-translational protein modification | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transcription by RNA polymerase II | 3 |
| regulation of transcription by RNA polymerase II | 2 |
| negative regulation of cell population proliferation | 2 |
| cellular anatomical structure | 2 |
| negative regulation of DNA-templated transcription | 1 |
| cell growth | 1 |
| regulation of growth | 1 |
| regulation of cellular component organization | 1 |
| endodermal cell differentiation | 1 |
| cell fate commitment involved in formation of primary germ layer | 1 |
| DNA-templated transcription elongation | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| cell surface receptor signaling pathway | 1 |
| multicellular organismal process | 1 |
| maintenance of cell number | 1 |
| positive regulation of signal transduction | 1 |
| Wnt signaling pathway | 1 |
| regulation of Wnt signaling pathway | 1 |
| mRNA processing | 1 |
| RNA 3’-end processing | 1 |
| mRNA 3’-end processing | 1 |
| regulation of mRNA 3’-end processing | 1 |
| positive regulation of mRNA processing | 1 |
| regulation of protein stability | 1 |
| transcription elongation by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription, elongation | 1 |
| regulation of transcription elongation by RNA polymerase II | 1 |
| positive regulation of transcription by RNA polymerase II | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| myeloid cell differentiation | 1 |
| negative regulation of cell differentiation | 1 |
| regulation of myeloid cell differentiation | 1 |
| positive regulation of DNA-templated transcription | 1 |
| fibroblast proliferation | 1 |
| regulation of fibroblast proliferation | 1 |
| epithelial cell proliferation | 1 |
Protein interactions and networks
STRING
3672 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CDC73 | LEO1 | Q8WVC0 | 999 |
| CDC73 | CTR9 | Q6PD62 | 999 |
| CDC73 | RTF1 | Q92541 | 997 |
| CDC73 | SKIC8 | Q9GZS3 | 996 |
| CDC73 | MEN1 | O00255 | 903 |
| CDC73 | CTNNB1 | P35222 | 899 |
| CDC73 | POLR2A | P24928 | 884 |
| CDC73 | RNF20 | Q5VTR2 | 862 |
| CDC73 | CASR | P41180 | 856 |
| CDC73 | GLI1 | P08151 | 841 |
| CDC73 | PAF1 | Q8N7H5 | 833 |
| CDC73 | RNF40 | O75150 | 824 |
| CDC73 | SUPT5H | O00267 | 801 |
| CDC73 | PTH | P01270 | 752 |
| CDC73 | PHF6 | Q8IWS0 | 723 |
IntAct
364 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CCNT1 | CDK9 | psi-mi:“MI:0914”(association) | 0.980 |
| PAF1 | CDC73 | psi-mi:“MI:0914”(association) | 0.960 |
| CDC73 | PAF1 | psi-mi:“MI:0915”(physical association) | 0.960 |
| CDC73 | CTR9 | psi-mi:“MI:0914”(association) | 0.940 |
| CTR9 | CDC73 | psi-mi:“MI:0914”(association) | 0.940 |
| CDC73 | CTR9 | psi-mi:“MI:0915”(physical association) | 0.940 |
| LEO1 | CDC73 | psi-mi:“MI:0915”(physical association) | 0.930 |
| RFX5 | RFXAP | psi-mi:“MI:0914”(association) | 0.880 |
| GOLGA2 | CDC73 | psi-mi:“MI:0915”(physical association) | 0.850 |
| CEP70 | CDC73 | psi-mi:“MI:0915”(physical association) | 0.850 |
| CDC73 | GOLGA2 | psi-mi:“MI:0915”(physical association) | 0.850 |
BioGRID (556): CDC73 (Two-hybrid), CDC73 (Two-hybrid), CDC73 (Two-hybrid), CDC73 (Two-hybrid), VPS37B (Two-hybrid), CEP70 (Two-hybrid), TSGA10 (Two-hybrid), FSD2 (Two-hybrid), CCDC155 (Two-hybrid), CDC73 (Affinity Capture-MS), CDC73 (Affinity Capture-MS), CDC73 (Affinity Capture-Western), CDC73 (Affinity Capture-Western), CDC73 (Reconstituted Complex), CTR9 (Affinity Capture-MS)
ESM2 similar proteins: A1CT57, A1DMG9, A1L243, A4R8D7, A5PJG7, C8V9Y5, F1R777, F7VSU2, I1RMK9, I1RX50, O13962, O96005, P06182, P0CM34, P0CM35, P10871, P14187, P25711, P53700, P53701, P53702, P53703, P9WES7, Q00873, Q04499, Q0J6P7, Q0U388, Q13435, Q14696, Q2NL17, Q2UM19, Q4V8C8, Q4WMU5, Q4WN42, Q51LD2, Q552W5, Q5F339, Q5R6F1, Q5U2R7, Q5ZLM0
Diamond homologs: Q4V8C8, Q5ZLM0, Q6P1J9, Q8JZM7, Q9UUE7, Q06697, Q9LJ87
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CDC73 | up-regulates | CTNNB1 | binding |
| CDC73 | “form complex” | PAF1C | binding |
| PTPN11 | “up-regulates activity” | CDC73 | dephosphorylation |
| PTK6 | “down-regulates activity” | CDC73 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 93 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| HIV elongation arrest and recovery | 10 | 56.7× | 7e-14 |
| Pausing and recovery of HIV elongation | 10 | 56.7× | 7e-14 |
| Pausing and recovery of Tat-mediated HIV elongation | 9 | 54.4× | 2e-12 |
| Tat-mediated HIV elongation arrest and recovery | 9 | 54.4× | 2e-12 |
| Signaling by FGFR2 IIIa TM | 5 | 49.3× | 8e-07 |
| Abortive elongation of HIV-1 transcript in the absence of Tat | 6 | 48.8× | 5e-08 |
| Formation of RNA Pol II elongation complex | 14 | 44.4× | 1e-17 |
| RNA Polymerase II Transcription Elongation | 14 | 44.4× | 1e-17 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| transcription elongation by RNA polymerase II | 8 | 46.1× | 2e-09 |
| positive regulation of transcription elongation by RNA polymerase II | 9 | 35.2× | 2e-09 |
| stem cell population maintenance | 5 | 27.4× | 1e-04 |
| transcription by RNA polymerase II | 13 | 11.9× | 8e-09 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: activating (oncogene-like) across 1 cancer types — UCEC.
Clinical variants and AI predictions
ClinVar
1986 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 141 |
| Likely pathogenic | 31 |
| Uncertain significance | 874 |
| Likely benign | 794 |
| Benign | 30 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069682 | NC_000001.10:g.(?193099298)(193099379_?)del | Pathogenic |
| 1069683 | NC_000001.10:g.(?193181185)(193219842_?)del | Pathogenic |
| 1069684 | NC_000001.10:g.(?193202113)(193205496_?)del | Pathogenic |
| 1069972 | NM_024529.5(CDC73):c.10del (p.Val4fs) | Pathogenic |
| 1072177 | NM_024529.5(CDC73):c.341T>A (p.Leu114Ter) | Pathogenic |
| 1074700 | NM_024529.5(CDC73):c.415C>T (p.Arg139Ter) | Pathogenic |
| 1075111 | NM_024529.5(CDC73):c.878dup (p.Tyr293Ter) | Pathogenic |
| 1076788 | NM_024529.5(CDC73):c.687_688del (p.Arg229fs) | Pathogenic |
| 1338411 | NM_024529.5(CDC73):c.49del (p.Glu17fs) | Pathogenic |
| 1353959 | NM_024529.5(CDC73):c.1012C>T (p.Gln338Ter) | Pathogenic |
| 1355843 | NM_024529.5(CDC73):c.628C>T (p.Gln210Ter) | Pathogenic |
| 1388879 | NM_024529.5(CDC73):c.1072C>T (p.Arg358Ter) | Pathogenic |
| 1405935 | NM_024529.5(CDC73):c.1417dup (p.Ile473fs) | Pathogenic |
| 1414614 | NM_024529.5(CDC73):c.893del (p.Phe298fs) | Pathogenic |
| 1452911 | NM_024529.5(CDC73):c.201del (p.His68fs) | Pathogenic |
| 1454174 | NM_024529.5(CDC73):c.877dup (p.Tyr293fs) | Pathogenic |
| 1454960 | NM_024529.5(CDC73):c.501_502del (p.Glu168fs) | Pathogenic |
| 1455290 | NM_024529.5(CDC73):c.131+1G>T | Pathogenic |
| 1456469 | NM_024529.5(CDC73):c.331del (p.Ser111fs) | Pathogenic |
| 1457823 | NM_024529.5(CDC73):c.406A>T (p.Lys136Ter) | Pathogenic |
| 1457824 | NM_024529.5(CDC73):c.496C>T (p.Gln166Ter) | Pathogenic |
| 1457825 | NM_024529.5(CDC73):c.626_629del (p.Lys209fs) | Pathogenic |
| 1459830 | NM_024529.5(CDC73):c.510del (p.Arg171fs) | Pathogenic |
| 1459882 | NM_024529.5(CDC73):c.1397del (p.Pro466fs) | Pathogenic |
| 1460166 | NC_000001.10:g.(?193104511)(193104729_?)del | Pathogenic |
| 1707836 | NM_024529.5(CDC73):c.240del (p.Glu81fs) | Pathogenic |
| 1739774 | NM_024529.5(CDC73):c.1171G>T (p.Glu391Ter) | Pathogenic |
| 1740969 | NM_024529.5(CDC73):c.449_452del (p.Lys150fs) | Pathogenic |
| 1754215 | NM_024529.5(CDC73):c.1226_1230del (p.Lys409fs) | Pathogenic |
| 1765311 | NM_024529.5(CDC73):c.897del (p.Gly300fs) | Pathogenic |
SpliceAI
3078 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:193122327:TGGGG:T | donor_gain | 1.0000 |
| 1:193122328:GGGG:G | donor_gain | 1.0000 |
| 1:193122328:GGGGG:G | donor_gain | 1.0000 |
| 1:193122329:GGG:G | donor_gain | 1.0000 |
| 1:193122329:GGGG:G | donor_gain | 1.0000 |
| 1:193122330:GG:G | donor_gain | 1.0000 |
| 1:193122330:GGG:G | donor_gain | 1.0000 |
| 1:193122331:GG:G | donor_gain | 1.0000 |
| 1:193122331:GGTA:G | donor_loss | 1.0000 |
| 1:193122332:G:GG | donor_gain | 1.0000 |
| 1:193122332:GT:G | donor_loss | 1.0000 |
| 1:193122333:T:A | donor_loss | 1.0000 |
| 1:193125215:GCT:G | donor_gain | 1.0000 |
| 1:193125217:TG:T | donor_loss | 1.0000 |
| 1:193125218:G:GA | donor_loss | 1.0000 |
| 1:193125218:G:GG | donor_gain | 1.0000 |
| 1:193125219:TAA:T | donor_loss | 1.0000 |
| 1:193125220:AAGTA:A | donor_loss | 1.0000 |
| 1:193130161:ATTTT:A | acceptor_gain | 1.0000 |
| 1:193130165:T:TA | acceptor_gain | 1.0000 |
| 1:193130166:G:A | acceptor_gain | 1.0000 |
| 1:193130169:TTTAG:T | acceptor_loss | 1.0000 |
| 1:193130170:TTA:T | acceptor_loss | 1.0000 |
| 1:193130171:TAGAC:T | acceptor_loss | 1.0000 |
| 1:193130172:A:AG | acceptor_gain | 1.0000 |
| 1:193130172:AGACT:A | acceptor_gain | 1.0000 |
| 1:193130173:G:GT | acceptor_gain | 1.0000 |
| 1:193130173:GA:G | acceptor_gain | 1.0000 |
| 1:193130173:GAC:G | acceptor_gain | 1.0000 |
| 1:193130173:GACT:G | acceptor_gain | 1.0000 |
AlphaMissense
3460 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:193122214:T:A | L5H | 1.000 |
| 1:193122223:T:C | L8P | 1.000 |
| 1:193122294:T:A | W32R | 1.000 |
| 1:193122294:T:C | W32R | 1.000 |
| 1:193122318:T:G | Y40D | 1.000 |
| 1:193125168:T:C | L63P | 1.000 |
| 1:193125171:T:C | L64P | 1.000 |
| 1:193125191:C:G | H71D | 1.000 |
| 1:193125192:A:G | H71R | 1.000 |
| 1:193125193:T:A | H71Q | 1.000 |
| 1:193125193:T:G | H71Q | 1.000 |
| 1:193125200:T:C | Y74H | 1.000 |
| 1:193125204:T:A | V75D | 1.000 |
| 1:193125212:G:C | A78P | 1.000 |
| 1:193130193:T:A | V86D | 1.000 |
| 1:193130208:G:C | R91P | 1.000 |
| 1:193130217:T:C | L94P | 1.000 |
| 1:193130229:T:A | L98H | 1.000 |
| 1:193130229:T:C | L98P | 1.000 |
| 1:193141882:T:A | I182N | 1.000 |
| 1:193141882:T:G | I182S | 1.000 |
| 1:193141884:G:C | A183P | 1.000 |
| 1:193141887:G:C | A184P | 1.000 |
| 1:193141891:T:A | I185N | 1.000 |
| 1:193141896:G:C | A187P | 1.000 |
| 1:193147895:T:C | L253P | 1.000 |
| 1:193150343:T:C | Y290H | 1.000 |
| 1:193150349:A:G | R292G | 1.000 |
| 1:193150350:G:C | R292T | 1.000 |
| 1:193150350:G:T | R292I | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000009256 (1:193156721 A>G), RS1000075497 (1:193153172 G>C), RS1000106654 (1:193238944 T>G), RS1000118573 (1:193122095 C>G,T), RS1000139394 (1:193192828 C>G,T), RS1000142328 (1:193194769 T>C), RS1000147035 (1:193154731 G>T), RS1000150178 (1:193190238 A>G), RS1000156110 (1:193137203 T>C), RS1000162740 (1:193233766 T>C), RS1000195192 (1:193194545 A>G), RS1000208337 (1:193143796 A>G), RS1000210398 (1:193150917 T>C), RS1000217741 (1:193137526 A>G), RS1000219918 (1:193239343 G>T)
Disease associations
OMIM: gene MIM:607393 | disease phenotypes: MIM:608266, MIM:145000, MIM:145001, MIM:131100, MIM:167000, MIM:114480
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hyperparathyroidism 2 with jaw tumors | Definitive | Autosomal dominant |
| parathyroid gland carcinoma | Strong | Autosomal dominant |
| hyperparathyroidism 1 | Strong | Autosomal dominant |
| familial isolated hyperparathyroidism | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| hyperparathyroidism 2 with jaw tumors | Definitive | AD |
Mondo (11): parathyroid gland carcinoma (MONDO:0012004), hereditary neoplastic syndrome (MONDO:0015356), hyperparathyroidism 1 (MONDO:0007767), hyperparathyroidism 2 with jaw tumors (MONDO:0007768), endocrine gland neoplasm (MONDO:0002082), hyperparathyroidism (MONDO:0001741), multiple endocrine neoplasia type 1 (MONDO:0007540), parathyroid gland adenoma (MONDO:0006890), ovarian cancer (MONDO:0008170), hereditary breast carcinoma (MONDO:0016419), familial isolated hyperparathyroidism (MONDO:0015027)
Orphanet (8): Inherited cancer-predisposing syndrome (Orphanet:140162), Parathyroid carcinoma (Orphanet:143), Familial isolated hyperparathyroidism (Orphanet:99879), Hyperparathyroidism-jaw tumor syndrome (Orphanet:99880), Tumor of endocrine glands (Orphanet:182130), Multiple endocrine neoplasia type 1 (Orphanet:652), Rare ovarian cancer (Orphanet:213500), Hereditary breast cancer (Orphanet:227535)
HPO phenotypes
51 total (30 of 51 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000083 | Renal insufficiency |
| HP:0000107 | Renal cyst |
| HP:0000113 | Polycystic kidney dysplasia |
| HP:0000121 | Nephrocalcinosis |
| HP:0000131 | Uterine leiomyoma |
| HP:0000234 | Abnormality of the head |
| HP:0000787 | Nephrolithiasis |
| HP:0000843 | Hyperparathyroidism |
| HP:0000934 | Chondrocalcinosis |
| HP:0000938 | Osteopenia |
| HP:0000939 | Osteoporosis |
| HP:0001324 | Muscle weakness |
| HP:0001442 | Typified by somatic mosaicism |
| HP:0001609 | Hoarse voice |
| HP:0001733 | Pancreatitis |
| HP:0001824 | Weight loss |
| HP:0001959 | Polydipsia |
| HP:0002015 | Dysphagia |
| HP:0002017 | Nausea and vomiting |
| HP:0002019 | Constipation |
| HP:0002148 | Hypophosphatemia |
| HP:0002150 | Hypercalciuria |
| HP:0002315 | Headache |
| HP:0002574 | Episodic abdominal pain |
| HP:0002653 | Bone pain |
| HP:0002667 | Nephroblastoma |
| HP:0002890 | Thyroid carcinoma |
| HP:0002897 | Parathyroid adenoma |
| HP:0003072 | Hypercalcemia |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001521_27 | Subcutaneous adipose tissue | 3.000000e-06 |
| GCST003013_35 | White matter hyperintensity burden | 7.000000e-07 |
| GCST003992_1 | Photic sneeze reflex | 3.000000e-11 |
| GCST004369_2 | Ovarian disease with few adhesions | 2.000000e-07 |
| GCST006575_1 | Takayasu arteritis | 3.000000e-07 |
| GCST007576_230 | Chronotype | 1.000000e-08 |
| GCST012049_4 | High density lipoprotein cholesterol levels | 1.000000e-06 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005665 | white matter hyperintensity measurement |
| EFO:0007887 | autosomal dominant compelling helio-ophthalmic outburst syndrome |
| EFO:0008328 | chronotype measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006961 | Hyperparathyroidism | C19.642.355 |
| D018761 | Multiple Endocrine Neoplasia Type 1 | C04.588.322.400.500; C04.651.600.500; C04.700.630.500; C16.320.700.630.500; C19.344.400.500 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
| C562840 | Breast Cancer, Familial (supp.) | |
| C564166 | Hyperparathyroidism 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5724787 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,538 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1232461 | MOLIBRESIB | 2 | 1,538 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
3 potent at pChembl≥5 of 3 total, top 3 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.19 | Kd | 64 | nM | MOLIBRESIB |
| 7.14 | Kd | 73 | nM | MOLIBRESIB |
| 7.05 | IC50 | 90 | nM | MOLIBRESIB |
PubChem BioAssay actives
3 with measured affinity, of 8 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide | 2174624: Binding affinity to CDC73 (unknown origin) assessed as apparent dissociation constant | kd | 0.0640 | uM |
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects binding, decreases reaction, affects reaction, increases expression, increases stability (+1 more) | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| bisphenol A | decreases methylation | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| benzyloxycarbonylleucyl-leucyl-leucine aldehyde | increases expression | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | increases ADP-ribosylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Endosulfan | decreases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Fluorouracil | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Phenobarbital | affects expression | 1 |
| Quercetin | decreases expression | 1 |
| Ribonucleotides | affects binding | 1 |
| Rotenone | decreases expression | 1 |
ChEMBL screening assays
8 unique, capped per target: 8 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5696854 | Binding | Binding affinity to CDC73 (unknown origin) assessed as apparent dissociation constant | Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. — Nature |
Cellosaurus cell lines
1 cell lines: 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D4WZ | MIPTi002-A | Induced pluripotent stem cell | Female |
Clinical trials (associated diseases)
187 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00037518 | PHASE4 | COMPLETED | A Study of an Investigational Medication for Severe Primary Hyperparathyroidism or Parathyroid Cancer |
| NCT04574947 | PHASE4 | COMPLETED | Lidocaine And Neuromonitoring in Thyroid Surgery |
| NCT00359385 | PHASE4 | WITHDRAWN | The Effects of Alendronate After Cure of Primary Hyperparathyroidism |
| NCT00379899 | PHASE4 | COMPLETED | ADVANCE: Study to Evaluate Cinacalcet Plus Low Dose Vitamin D on Vascular Calcification in Subjects With Chronic Kidney Disease Receiving Hemodialysis |
| NCT01143987 | PHASE4 | COMPLETED | Cincalcet and Vascular Arterial Stiffness Among Peritoneal Dialysis Patients With Secondary Hyperparathyroidism |
| NCT01573520 | PHASE4 | COMPLETED | Treatment Adhesion in Dialysis Patients Treated With Cinacalcet |
| NCT03469310 | PHASE4 | COMPLETED | Minimizing Narcotic Analgesics After Endocrine Surgery |
| NCT00190697 | PHASE4 | COMPLETED | A Study of LY353381 (Arzoxifene) for Patients Who Benefitted From This Drug in Other Oncology Trials and Wished to Continue Treatment |
| NCT00277160 | PHASE4 | COMPLETED | A Study of Primary Prophylaxis With Neulasta (Pegfilgrastim) Versus Secondary Prophylaxis After Chemotherapy in Elderly Subjects (>/= 65 Years Old) With Cancer |
| NCT00727961 | PHASE4 | COMPLETED | A Study to Evaluate Efficacy and Tolerance of Caelyx in Patients With Epithelial Ovarian Cancer. (Study P04072)(COMPLETED) |
| NCT00740116 | PHASE4 | COMPLETED | Tranexamic Acid in Surgery of Advanced Ovarian Cancer |
| NCT00817479 | PHASE4 | COMPLETED | Tumor Gene Expression in Women With Ovarian Cancer |
| NCT01432015 | PHASE4 | COMPLETED | Fosaprepitant Versus Aprepitant in the Prevention of Chemotherapy Induced Nausea and Vomiting |
| NCT01460030 | PHASE3 | COMPLETED | An Intra-individual Titration Study of KRN1493 for the Treatment of Hypercalcemia in Patients With Parathyroid Carcinoma or Intractable Primary Hyperparathyroidism |
| NCT03280264 | PHASE3 | COMPLETED | Phase 3 Study of KHK7580 for the Treatment of Hypercalcemia in Patients With Parathyroid Carcinoma or Primary Hyperparathyroidism |
| NCT00353496 | PHASE3 | COMPLETED | Study of Lanreotide Autogel in Non-functioning Entero-pancreatic Endocrine Tumours |
| NCT01964430 | PHASE3 | COMPLETED | Nab-paclitaxel and Gemcitabine vs Gemcitabine Alone as Adjuvant Therapy for Patients With Resected Pancreatic Cancer (the Apact Study) |
| NCT00417612 | PHASE3 | COMPLETED | Effectiveness of Paricalcitol in Reducing Parathyroid Hormone (PTH) Levels in X-linked Hypophosphatemic Rickets |
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| NCT00001277 | PHASE2 | COMPLETED | Studies of Elevated Parathyroid Activity |
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Related Atlas pages
- Associated diseases: hyperparathyroidism 2 with jaw tumors, parathyroid gland carcinoma, hyperparathyroidism 1, familial isolated hyperparathyroidism
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): endocrine gland neoplasm, endometriosis, familial isolated hyperparathyroidism, hereditary breast carcinoma, hereditary neoplastic syndrome, hyperparathyroidism, hyperparathyroidism 1, hyperparathyroidism 2 with jaw tumors, multiple endocrine neoplasia type 1, ovarian cancer, parathyroid gland adenoma, parathyroid gland carcinoma, Takayasu arteritis