CDH12-AS3

Summary

CDH12-AS3 (CDH12 antisense RNA 3, HGNC:59013) is a long non-coding RNA gene on chromosome 5p14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59013
Approved symbol	CDH12-AS3
Name	CDH12 antisense RNA 3
Location	5p14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000287471
Ensembl biotype	lncRNA
Entrez	105374682

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000664121, ENST00000832794, ENST00000832795, ENST00000832796, ENST00000832797, ENST00000832798

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000664121 — 2 exons

Exon	Start	End
ENSE00003852404	22212476	22212686
ENSE00003861478	22212914	22213761

Expression profiles

Bgee: expression breadth broad, 51 present calls, max score 91.54.

Top tissues by expression

51 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.54	gold quality
cortical plate	UBERON:0005343	60.03	gold quality
testis	UBERON:0000473	59.41	gold quality
left testis	UBERON:0004533	58.76	gold quality
right testis	UBERON:0004534	58.63	gold quality
blood	UBERON:0000178	58.19	gold quality
multicellular organism	UBERON:0000468	52.20	gold quality
prefrontal cortex	UBERON:0000451	51.62	gold quality
islet of Langerhans	UBERON:0000006	50.72	gold quality
cortex of kidney	UBERON:0001225	50.60	silver quality
endometrium	UBERON:0001295	48.76	gold quality
monocyte	CL:0000576	48.19	silver quality
superior frontal gyrus	UBERON:0002661	47.99	gold quality
frontal cortex	UBERON:0001870	47.21	gold quality
endocervix	UBERON:0000458	47.16	gold quality
gastrocnemius	UBERON:0001388	46.45	gold quality
adrenal gland	UBERON:0002369	45.75	gold quality
esophagus	UBERON:0001043	45.65	gold quality
Ammon’s horn	UBERON:0001954	45.24	gold quality
right lobe of liver	UBERON:0001114	44.66	silver quality
cerebral cortex	UBERON:0000956	44.44	gold quality
heart left ventricle	UBERON:0002084	44.36	silver quality
tibial nerve	UBERON:0001323	43.46	gold quality
left adrenal gland cortex	UBERON:0035825	42.93	silver quality
lower esophagus muscularis layer	UBERON:0035833	42.49	silver quality
Brodmann (1909) area 9	UBERON:0013540	42.39	silver quality
intestine	UBERON:0000160	41.80	silver quality
substantia nigra	UBERON:0002038	41.35	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	41.24	silver quality
ascending aorta	UBERON:0001496	40.71	silver quality

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.