CDH13-AS1

Summary

CDH13-AS1 (CDH13 antisense RNA 1, HGNC:55989) is a long non-coding RNA gene on chromosome 16q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55989
Approved symbol	CDH13-AS1
Name	CDH13 antisense RNA 1
Location	16q23.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-543N12.1
Ensembl gene	ENSG00000261410
Ensembl biotype	lncRNA
Entrez	105371368
RNAcentral	URS0002A68771 — lncRNA, 1092 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000562565, ENST00000564635, ENST00000743241, ENST00000743242, ENST00000743243

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562565 — 3 exons

Exon	Start	End
ENSE00002607849	83397926	83398170
ENSE00002613807	83396596	83396728
ENSE00002618621	83383016	83383200

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 65.50.

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
hindlimb stylopod muscle	UBERON:0004252	65.50	gold quality
skeletal muscle tissue	UBERON:0001134	64.21	silver quality
blood	UBERON:0000178	63.99	gold quality
islet of Langerhans	UBERON:0000006	63.55	gold quality
calcaneal tendon	UBERON:0003701	59.98	gold quality
urinary bladder	UBERON:0001255	59.73	gold quality
popliteal artery	UBERON:0002250	59.45	gold quality
tibial artery	UBERON:0007610	59.34	gold quality
prefrontal cortex	UBERON:0000451	57.91	gold quality
left testis	UBERON:0004533	56.65	gold quality
testis	UBERON:0000473	56.28	gold quality
uterine cervix	UBERON:0000002	56.05	gold quality
right testis	UBERON:0004534	55.15	gold quality
smooth muscle tissue	UBERON:0001135	54.62	gold quality
monocyte	CL:0000576	54.38	gold quality
corpus callosum	UBERON:0002336	53.74	gold quality
muscle of leg	UBERON:0001383	53.20	gold quality
ectocervix	UBERON:0012249	53.17	gold quality
superior frontal gyrus	UBERON:0002661	52.75	gold quality
Brodmann (1909) area 9	UBERON:0013540	52.45	gold quality
adrenal tissue	UBERON:0018303	51.31	gold quality
body of pancreas	UBERON:0001150	51.15	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	50.80	gold quality
frontal cortex	UBERON:0001870	50.63	gold quality
gastrocnemius	UBERON:0001388	50.43	gold quality
cerebral cortex	UBERON:0000956	49.79	gold quality
descending thoracic aorta	UBERON:0002345	49.37	gold quality
multicellular organism	UBERON:0000468	49.27	gold quality
endocervix	UBERON:0000458	48.93	gold quality
brain	UBERON:0000955	48.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• RP11543N12.1 and miR3243p may be potential biomarkers and therapeutic targets for Alzheimer’s disease. (PMID:29956723)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.