CDH13-AS2

Summary

CDH13-AS2 (CDH13 antisense RNA 2, HGNC:56243) is a long non-coding RNA gene on chromosome 16q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56243
Approved symbol	CDH13-AS2
Name	CDH13 antisense RNA 2
Location	16q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260228
Ensembl biotype	lncRNA
Entrez	102724163
RNAcentral	URS00001EA649 — lncRNA, 543 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000561599, ENST00000565064, ENST00000565714, ENST00000567342, ENST00000666360, ENST00000743018, ENST00000743019, ENST00000743020, ENST00000743021, ENST00000743022

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000561599 — 5 exons

Exon	Start	End
ENSE00002589766	83805623	83805999
ENSE00002602225	83803435	83803528
ENSE00002624992	83807518	83807834
ENSE00003868760	83794921	83797376
ENSE00003875817	83803669	83803715

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 97.37.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
descending thoracic aorta	UBERON:0002345	97.37	gold quality
thoracic aorta	UBERON:0001515	96.90	gold quality
ascending aorta	UBERON:0001496	96.87	gold quality
right coronary artery	UBERON:0001625	96.71	gold quality
stromal cell of endometrium	CL:0002255	93.47	gold quality
popliteal artery	UBERON:0002250	92.80	gold quality
tibial artery	UBERON:0007610	92.77	gold quality
left coronary artery	UBERON:0001626	91.95	gold quality
heart left ventricle	UBERON:0002084	90.96	gold quality
apex of heart	UBERON:0002098	90.12	gold quality
superior frontal gyrus	UBERON:0002661	89.73	gold quality
heart	UBERON:0000948	89.41	gold quality
myometrium	UBERON:0001296	88.99	gold quality
body of uterus	UBERON:0009853	88.42	gold quality
prefrontal cortex	UBERON:0000451	88.22	gold quality
hindlimb stylopod muscle	UBERON:0004252	87.83	gold quality
anterior cingulate cortex	UBERON:0009835	87.39	gold quality
right atrium auricular region	UBERON:0006631	86.91	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	86.56	gold quality
Brodmann (1909) area 9	UBERON:0013540	86.24	gold quality
frontal cortex	UBERON:0001870	86.15	gold quality
ectocervix	UBERON:0012249	85.94	gold quality
endocervix	UBERON:0000458	85.77	gold quality
cerebral cortex	UBERON:0000956	85.04	gold quality
muscle of leg	UBERON:0001383	84.88	gold quality
vagina	UBERON:0000996	84.82	gold quality
calcaneal tendon	UBERON:0003701	84.78	gold quality
gastrocnemius	UBERON:0001388	83.98	gold quality
skeletal muscle tissue	UBERON:0001134	83.84	gold quality
skin of leg	UBERON:0001511	83.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.