CDH18-AS1

Summary

CDH18-AS1 (CDH18 antisense RNA 1, HGNC:53088) is a long non-coding RNA gene on chromosome 5p14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53088
Approved symbol	CDH18-AS1
Name	CDH18 antisense RNA 1
Location	5p14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249854
Ensembl biotype	lncRNA
Entrez	102725105
RNAcentral	URS0000BC4519 — lncRNA, 1428 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000513573, ENST00000652475, ENST00000671155, ENST00000815170

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000513573 — 2 exons

Exon	Start	End
ENSE00002026835	20305565	20305887
ENSE00002051193	20331356	20331456

Expression profiles

Bgee: expression breadth broad, 46 present calls, max score 87.79.

Top tissues by expression

46 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.79	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.04	gold quality
testis	UBERON:0000473	70.27	gold quality
right testis	UBERON:0004534	69.42	gold quality
left testis	UBERON:0004533	69.36	gold quality
sural nerve	UBERON:0015488	59.99	silver quality
multicellular organism	UBERON:0000468	57.78	gold quality
blood	UBERON:0000178	55.45	gold quality
gastrocnemius	UBERON:0001388	53.87	gold quality
muscle of leg	UBERON:0001383	53.63	gold quality
islet of Langerhans	UBERON:0000006	51.40	gold quality
tibial nerve	UBERON:0001323	48.21	gold quality
monocyte	CL:0000576	47.20	silver quality
cerebellum	UBERON:0002037	46.90	silver quality
cerebellar cortex	UBERON:0002129	46.87	silver quality
small intestine	UBERON:0002108	46.86	silver quality
cerebellar hemisphere	UBERON:0002245	46.24	silver quality
frontal cortex	UBERON:0001870	46.02	gold quality
Ammon’s horn	UBERON:0001954	45.81	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.67	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	45.65	silver quality
right hemisphere of cerebellum	UBERON:0014890	45.49	silver quality
body of pancreas	UBERON:0001150	44.87	silver quality
tibial artery	UBERON:0007610	44.49	silver quality
right frontal lobe	UBERON:0002810	44.34	silver quality
kidney	UBERON:0002113	43.39	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	43.16	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	43.11	gold quality
thoracic mammary gland	UBERON:0005200	42.55	gold quality
prostate gland	UBERON:0002367	42.36	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.