CDH2-AS1

Summary

CDH2-AS1 (CDH2 antisense RNA 1, HGNC:40138) is a long non-coding RNA gene on chromosome 18q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40138
Approved symbol	CDH2-AS1
Name	CDH2 antisense RNA 1
Location	18q12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227279
Ensembl biotype	lncRNA
Entrez	139281654
RNAcentral	URS0002A411E1 — lncRNA, 833 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000423367, ENST00000785469, ENST00000785470, ENST00000785471

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423367 — 4 exons

Exon	Start	End
ENSE00001686327	27954518	27954627
ENSE00001795948	27959515	27959543
ENSE00004161273	27921527	27921748
ENSE00004161274	27963386	27963696

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 76.85.

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.85	silver quality
ganglionic eminence	UBERON:0004023	71.03	gold quality
ventricular zone	UBERON:0003053	70.96	gold quality
right adrenal gland cortex	UBERON:0035827	67.28	gold quality
left adrenal gland cortex	UBERON:0035825	65.17	gold quality
right adrenal gland	UBERON:0001233	64.30	gold quality
left adrenal gland	UBERON:0001234	63.35	gold quality
heart left ventricle	UBERON:0002084	62.87	gold quality
adrenal gland	UBERON:0002369	62.56	gold quality
heart	UBERON:0000948	61.57	gold quality
liver	UBERON:0002107	61.31	gold quality
right atrium auricular region	UBERON:0006631	60.08	gold quality
right lobe of liver	UBERON:0001114	59.92	gold quality
stromal cell of endometrium	CL:0002255	59.32	gold quality
apex of heart	UBERON:0002098	58.71	gold quality
islet of Langerhans	UBERON:0000006	57.91	gold quality
caudate nucleus	UBERON:0001873	57.67	gold quality
monocyte	CL:0000576	57.26	gold quality
prefrontal cortex	UBERON:0000451	57.16	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.35	gold quality
lower esophagus mucosa	UBERON:0035834	55.19	gold quality
pancreas	UBERON:0001264	54.84	gold quality
superior frontal gyrus	UBERON:0002661	54.65	gold quality
nucleus accumbens	UBERON:0001882	54.41	gold quality
body of stomach	UBERON:0001161	54.14	gold quality
stomach	UBERON:0000945	53.70	gold quality
left coronary artery	UBERON:0001626	53.64	gold quality
fundus of stomach	UBERON:0001160	53.22	gold quality
endometrium	UBERON:0001295	52.99	gold quality
temporal lobe	UBERON:0001871	52.86	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.