CDH3-AS1

Summary

CDH3-AS1 (CDH3 antisense RNA 1, HGNC:56084) is a long non-coding RNA gene on chromosome 16q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56084
Approved symbol	CDH3-AS1
Name	CDH3 antisense RNA 1
Location	16q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260577
Ensembl biotype	lncRNA
Entrez	123706523
RNAcentral	URS00026A1D6F — lncRNA, 1715 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000562172

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562172 — 2 exons

Exon	Start	End
ENSE00002605134	68644248	68645740
ENSE00002626998	68645980	68646168

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 84.47.

Top tissues by expression

111 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left ovary	UBERON:0002119	84.47	gold quality
ovary	UBERON:0000992	83.32	gold quality
right ovary	UBERON:0002118	81.42	gold quality
left uterine tube	UBERON:0001303	80.87	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.34	gold quality
body of uterus	UBERON:0009853	73.20	gold quality
myometrium	UBERON:0001296	72.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	70.94	silver quality
spleen	UBERON:0002106	69.87	gold quality
fallopian tube	UBERON:0003889	67.23	gold quality
ectocervix	UBERON:0012249	66.76	gold quality
uterine cervix	UBERON:0000002	66.16	gold quality
endocervix	UBERON:0000458	65.45	gold quality
prostate gland	UBERON:0002367	61.74	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.78	gold quality
ventricular zone	UBERON:0003053	59.71	gold quality
fundus of stomach	UBERON:0001160	59.58	gold quality
muscle tissue	UBERON:0002385	59.25	gold quality
cortical plate	UBERON:0005343	59.22	silver quality
endometrium	UBERON:0001295	58.42	gold quality
substantia nigra	UBERON:0002038	58.15	gold quality
skin of leg	UBERON:0001511	57.67	gold quality
amygdala	UBERON:0001876	57.50	gold quality
temporal lobe	UBERON:0001871	57.40	gold quality
zone of skin	UBERON:0000014	57.30	gold quality
lymph node	UBERON:0000029	56.87	gold quality
skin of abdomen	UBERON:0001416	56.56	gold quality
smooth muscle tissue	UBERON:0001135	56.30	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	55.48	gold quality
hypothalamus	UBERON:0001898	55.39	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.36

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.