CDH8-AS1

Summary

CDH8-AS1 (CDH8 antisense RNA 1, HGNC:55399) is a long non-coding RNA gene on chromosome 16q21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55399
Approved symbol	CDH8-AS1
Name	CDH8 antisense RNA 1
Location	16q21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260115
Ensembl biotype	lncRNA
Entrez	119863871
RNAcentral	URS00026A1F8B — lncRNA, 853 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000562349, ENST00000798787

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562349 — 4 exons

Exon	Start	End
ENSE00002576237	61918321	61918399
ENSE00002582616	61937914	61937980
ENSE00002588273	61940242	61940697
ENSE00002602857	61934112	61934223

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 83.79.

Top tissues by expression

89 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.79	gold quality
ventricular zone	UBERON:0003053	63.05	gold quality
skeletal muscle tissue	UBERON:0001134	62.60	gold quality
cortical plate	UBERON:0005343	62.46	gold quality
adrenal tissue	UBERON:0018303	55.80	gold quality
placenta	UBERON:0001987	54.91	gold quality
muscle tissue	UBERON:0002385	54.58	gold quality
urinary bladder	UBERON:0001255	54.39	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.44	gold quality
stromal cell of endometrium	CL:0002255	51.84	silver quality
prefrontal cortex	UBERON:0000451	50.92	gold quality
monocyte	CL:0000576	49.77	silver quality
right lobe of liver	UBERON:0001114	49.67	silver quality
bone marrow	UBERON:0002371	49.55	silver quality
blood	UBERON:0000178	49.33	silver quality
right lobe of thyroid gland	UBERON:0001119	49.20	silver quality
adult mammalian kidney	UBERON:0000082	49.13	gold quality
superior frontal gyrus	UBERON:0002661	49.11	silver quality
prostate gland	UBERON:0002367	48.85	gold quality
islet of Langerhans	UBERON:0000006	48.23	gold quality
hindlimb stylopod muscle	UBERON:0004252	48.22	silver quality
muscle of leg	UBERON:0001383	47.88	gold quality
adrenal gland	UBERON:0002369	47.29	gold quality
heart left ventricle	UBERON:0002084	47.27	silver quality
primary visual cortex	UBERON:0002436	46.82	silver quality
Brodmann (1909) area 9	UBERON:0013540	46.57	gold quality
cortex of kidney	UBERON:0001225	46.30	silver quality
stomach	UBERON:0000945	46.23	gold quality
gastrocnemius	UBERON:0001388	46.00	silver quality
amygdala	UBERON:0001876	45.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.