CDK13-DT

Summary

CDK13-DT (CDK13 divergent transcript, HGNC:55407) is a long non-coding RNA gene on chromosome 7p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55407
Approved symbol	CDK13-DT
Name	CDK13 divergent transcript
Location	7p14.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC072061.1
Ensembl gene	ENSG00000259826
Ensembl biotype	lncRNA
Entrez	112267983
RNAcentral	URS0000D780FB — lncRNA, 1912 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000569710, ENST00000734914

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000569710 — 1 exons

Exon	Start	End
ENSE00004067429	39947522	39949977

Expression profiles

Bgee: expression breadth ubiquitous, 158 present calls, max score 83.60.

FANTOM5 (CAGE): breadth broad, TPM avg 0.5443 / max 39.1494, expressed in 244 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
83726	0.5443	244

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.60	gold quality
granulocyte	CL:0000094	69.59	gold quality
bone marrow cell	CL:0002092	66.28	silver quality
myocardium	UBERON:0002349	64.74	gold quality
prefrontal cortex	UBERON:0000451	64.52	gold quality
monocyte	CL:0000576	64.47	gold quality
leukocyte	CL:0000738	64.35	gold quality
cerebellar hemisphere	UBERON:0002245	62.80	gold quality
cerebellar cortex	UBERON:0002129	62.75	gold quality
buccal mucosa cell	CL:0002336	62.54	silver quality
Brodmann (1909) area 9	UBERON:0013540	62.42	gold quality
right hemisphere of cerebellum	UBERON:0014890	62.15	gold quality
right frontal lobe	UBERON:0002810	62.06	gold quality
cerebellum	UBERON:0002037	61.83	gold quality
ventricular zone	UBERON:0003053	61.46	gold quality
left ovary	UBERON:0002119	61.39	gold quality
calcaneal tendon	UBERON:0003701	61.03	gold quality
anterior cingulate cortex	UBERON:0009835	60.89	gold quality
ganglionic eminence	UBERON:0004023	60.79	gold quality
mucosa of transverse colon	UBERON:0004991	60.63	gold quality
body of uterus	UBERON:0009853	60.57	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.48	gold quality
cortical plate	UBERON:0005343	60.23	silver quality
frontal cortex	UBERON:0001870	59.66	gold quality
lower lobe of lung	UBERON:0008949	59.59	silver quality
neocortex	UBERON:0001950	59.57	gold quality
right ovary	UBERON:0002118	59.55	gold quality
biceps brachii	UBERON:0001507	59.51	gold quality
muscle of leg	UBERON:0001383	59.50	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	59.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.