CDK4
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Also known as PSK-J3
Summary
CDK4 (cyclin dependent kinase 4, HGNC:1773) is a protein-coding gene on chromosome 12q14.1, encoding Cyclin-dependent kinase 4 (P11802). Ser/Thr-kinase component of cyclin D-CDK4 (DC) complexes that phosphorylate and inhibit members of the retinoblastoma (RB) protein family including RB1 and regulate the cell-cycle during G(1)/S transition. In precision oncology, CDK4 Amplification confers sensitivity to Palbociclib in Liposarcoma (CIViC Level B); 4 further curated variant–drug associations are listed below. It is a selective cancer dependency (DepMap: 58.0% of cell lines).
The protein encoded by this gene is a member of the Ser/Thr protein kinase family. This protein is highly similar to the gene products of S. cerevisiae cdc28 and S. pombe cdc2. It is a catalytic subunit of the protein kinase complex that is important for cell cycle G1 phase progression. The activity of this kinase is restricted to the G1-S phase, which is controlled by the regulatory subunits D-type cyclins and CDK inhibitor p16(INK4a). This kinase was shown to be responsible for the phosphorylation of retinoblastoma gene product (Rb). Mutations in this gene as well as in its related proteins including D-type cyclins, p16(INK4a) and Rb were all found to be associated with tumorigenesis of a variety of cancers. Multiple polyadenylation sites of this gene have been reported.
Source: NCBI Gene 1019 — RefSeq curated summary.
At a glance
- Gene–disease (curated): melanoma, cutaneous malignant, susceptibility to, 3 (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 6
- Clinical variants (ClinVar): 1,127 total — 3 pathogenic
- Phenotypes (HPO): 19
- Druggable target: yes — 56 molecules with ChEMBL bioactivity
- Precision-oncology evidence (CIViC): 5 curated variant–drug associations
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 1 cancer types
- Cancer dependency (DepMap): dependent in 58.0% of screened cell lines
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_000075
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1773 |
| Approved symbol | CDK4 |
| Name | cyclin dependent kinase 4 |
| Location | 12q14.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PSK-J3 |
| Ensembl gene | ENSG00000135446 |
| Ensembl biotype | protein_coding |
| OMIM | 123829 |
| Entrez | 1019 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 13 protein_coding, 2 nonsense_mediated_decay, 2 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000257904, ENST00000546489, ENST00000547281, ENST00000547853, ENST00000549606, ENST00000550419, ENST00000551706, ENST00000551800, ENST00000551888, ENST00000552254, ENST00000552388, ENST00000552713, ENST00000552862, ENST00000553237, ENST00000918532, ENST00000918533, ENST00000918534, ENST00000918535
RefSeq mRNA: 1 — MANE Select: NM_000075
NM_000075
CCDS: CCDS8953
Canonical transcript exons
ENST00000257904 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001141069 | 57747727 | 57748617 |
| ENSE00002374522 | 57752175 | 57752310 |
| ENSE00003458939 | 57749182 | 57749317 |
| ENSE00003465926 | 57750656 | 57750765 |
| ENSE00003486099 | 57751207 | 57751342 |
| ENSE00003497990 | 57750923 | 57751090 |
| ENSE00003593565 | 57751500 | 57751736 |
| ENSE00003676150 | 57749454 | 57749504 |
Expression profiles
Bgee: expression breadth ubiquitous, 138 present calls, max score 98.33.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 112.2027 / max 4011.7860, expressed in 1819 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 131753 | 92.4356 | 1818 |
| 131754 | 18.7230 | 1782 |
| 131750 | 0.6972 | 324 |
| 131751 | 0.2111 | 84 |
| 131752 | 0.1358 | 33 |
Top tissues by expression
138 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| embryo | UBERON:0000922 | 98.33 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.33 | gold quality |
| ventricular zone | UBERON:0003053 | 98.30 | gold quality |
| stromal cell of endometrium | CL:0002255 | 97.91 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.21 | gold quality |
| ovary | UBERON:0000992 | 97.13 | gold quality |
| right ovary | UBERON:0002118 | 97.13 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 97.11 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.06 | gold quality |
| left ovary | UBERON:0002119 | 97.05 | gold quality |
| left adrenal gland | UBERON:0001234 | 96.92 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 96.76 | gold quality |
| left uterine tube | UBERON:0001303 | 96.75 | gold quality |
| endocervix | UBERON:0000458 | 96.70 | gold quality |
| adrenal gland | UBERON:0002369 | 96.70 | gold quality |
| ectocervix | UBERON:0012249 | 96.70 | gold quality |
| body of uterus | UBERON:0009853 | 96.66 | gold quality |
| myometrium | UBERON:0001296 | 96.43 | gold quality |
| adenohypophysis | UBERON:0002196 | 96.38 | gold quality |
| fallopian tube | UBERON:0003889 | 96.35 | gold quality |
| pancreas | UBERON:0001264 | 96.34 | gold quality |
| islet of Langerhans | UBERON:0000006 | 96.31 | gold quality |
| gall bladder | UBERON:0002110 | 96.31 | gold quality |
| body of pancreas | UBERON:0001150 | 96.29 | gold quality |
| pituitary gland | UBERON:0000007 | 96.16 | gold quality |
| vermiform appendix | UBERON:0001154 | 96.06 | gold quality |
| adrenal tissue | UBERON:0018303 | 96.03 | gold quality |
| right coronary artery | UBERON:0001625 | 95.95 | gold quality |
| lymph node | UBERON:0000029 | 95.92 | gold quality |
| uterine cervix | UBERON:0000002 | 95.91 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-84465 | yes | 2197.80 |
| E-HCAD-4 | yes | 143.81 |
| E-CURD-114 | yes | 61.29 |
| E-HCAD-5 | yes | 42.44 |
| E-MTAB-9067 | yes | 23.71 |
| E-GEOD-125970 | yes | 22.02 |
| E-CURD-122 | yes | 19.99 |
| E-CURD-112 | yes | 9.12 |
| E-MTAB-7303 | no | 352.50 |
| E-MTAB-6524 | no | 319.61 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ATF2, CEBPA, E2F1, ESR1, ETS1, EZH2, FOS, GATA4, HDAC1, HR, IRF1, IRF3, JARID2, JUND, KLF4, KSR1, LRRC4, MAFA, MYC, NEUROG3, NFATC2, NFKB1, NFKB, NFKBID, NR3C1, PARP1, PAX3, PDGFB, POU4F2, PPARG, RELA, RUNX1, SATB1, SIN3B, SOX6, SOX9, SP1, STAT3, TFDP1, TGFB1
miRNA regulators (miRDB)
45 targeting CDK4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-7845-5P | 99.88 | 64.88 | 771 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6844 | 99.82 | 70.69 | 2423 |
| HSA-MIR-6875-3P | 99.82 | 70.26 | 2983 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-4428 | 99.73 | 66.41 | 1733 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-3714 | 99.71 | 70.74 | 2671 |
| HSA-MIR-494-3P | 99.70 | 71.45 | 2795 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-4756-3P | 99.62 | 66.30 | 1319 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
| HSA-MIR-7152-5P | 99.60 | 69.33 | 2094 |
| HSA-MIR-6832-5P | 99.58 | 64.82 | 1132 |
| HSA-MIR-6716-5P | 99.56 | 68.62 | 1244 |
| HSA-MIR-486-5P | 99.51 | 70.39 | 707 |
| HSA-MIR-584-3P | 99.35 | 67.69 | 1082 |
| HSA-MIR-7515 | 99.31 | 68.22 | 1795 |
| HSA-MIR-504-3P | 99.30 | 67.18 | 1745 |
| HSA-MIR-4263 | 99.18 | 69.25 | 2236 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 58.0% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- Rarity of CDK4 germline mutations in familial melanoma. (PMID:11828258)
- Reversal of growth suppression by p107 via direct phosphorylation by cyclin D1/cyclin-dependent kinase 4 (PMID:11884610)
- Results show that Tax directly interacts with CDK4. The Tax/CDK complex represents an active holoenzyme which capably phosphorylates the Rb protein in vitro and is resistant to repression by the inhibitor p21(CIP). (PMID:11971966)
- ultraviolet-B-induced cell cycle arrest in A431 cells is mediated by cyclin-dependent kinase 4 downregulation (PMID:11982759)
- Keratinocytes engineered to express cdk4(R24C) and hTERT but not p53DD did not exhibit an extended life span. (PMID:12077343)
- Sequential extension of proliferative lifespan in human fibroblasts is induced by over-expression of CDK4 or 6 and loss of p53 function. (PMID:12082615)
- data identify a new role for oncogenic Ras in CDK4 regulation and highlight the functional importance of CDK4 suppression in preventing uncontrolled growth (PMID:12357246)
- Cdk4 binds to p16INK4A and causes its phosphorylation (PMID:12529334)
- Interferon gamma reduces the activity of Cdk4 and Cdk2, inhibiting he G1 cell cycle in human hepatocellular carcinoma cells. (PMID:12531694)
- Cdk4-overexpressing cells divide in an apparently normal regulated fashion, are able to respond to changes in calcium levels, and fully differentiate . These results suggest that the differentiation pathways in Cdk4-overexpressing cells remain intact (PMID:12545164)
- Data provide evidence of a role for MDM2 and CDK4 in the pathogenesis of carcinosarcoma. (PMID:12565795)
- increases of cyclin D1, cyclin-dependent kinase 4, cyclin E, cyclin A, and Wee1 play an important role in the development of hepatocellular carcinoma from cirrhosis (PMID:12601350)
- Cells overexpressing cdk4 or cyclin D1 exhibited nuclear features characteristic of apoptosis. (PMID:12680219)
- DNA mutation analysis of the CDK4 gene in many types of neoplasms reveal it is very rare. Random mutagenisis the CDK4 gene showed that most of the mutations that disrupted interactions with p16(INK4) also knocked out the activity of CDK4. (PMID:12731669)
- significant difference in their biochemical properties between CDK4/cyclin D1 and CDK2/cyclin A affecting regulation of cellular RB function (PMID:14646596)
- susceptibility to skin tumor formation by forced expression of CDK4 (PMID:14647432)
- Data suggest that cyclin dependent kinase 4 is involved in the development of tobacco-mediated oral carcinogenesis, and that c-myc expression is absent in normal and high in later stages of oral cancer development. (PMID:14672406)
- cyclin-dependent kinase (CDK)2, -4, and -6 were down-regulated from the myelocytes/metamyelocytes stages and onward (PMID:14694185)
- CDK4 binding to cyclin D1 is stimulated by Cdc37 (PMID:14701845)
- cyclin D1/Cdk4 complexes are regulated by calcium/calmodulin-dependent protein kinase I (PMID:14754892)
- Cdk2 and Cdk4 phosphorylate human Cdt1 and induce its degradation (PMID:15004027)
- CDK4, MDM2, SAS and GLI genes are amplified in leiomyosarcoma, alveolar and embryonal rhabdomyosarcoma (PMID:15024701)
- A novel Cdk4 docking motif has been defined within a stretch of 19 amino acids from the C-terminal domain of the Rb protein that are essential for Cdk4 binding. (PMID:15169919)
- Transcriptional regulation of the CDK4 promotor is compared in normal breast cell lines vs breast cancer cell lines. (PMID:15208653)
- When expressed in transgenic mice, total CDK4 protein expression was increased by up to 5-fold, with a concomitant increase in CDK4 activity. (PMID:15480536)
- Expression levels of CDK4 predict the cellular effects ofmTOIR inhibitors in ovarian carcinoma. (PMID:15505422)
- This suggests that dysregulation of CCND2 and CDK4 plays a specific role in WT tumorigenesis. (PMID:15797629)
- CDK4 melanoma families known to date have a substitution of amino acid 24. (PMID:15880589)
- Breast cancer patients might benefit from inhibiting CDK4 kinase. (PMID:16413469)
- there is a novel function for CDK4-cyclin D3 activity in S and G(2) phase that is critical for G(2)/M progression and the fidelity of mitosis (PMID:16476733)
- the subtype 2 receptor-mediated antiproliferative effect of SRIH on TT cell proliferation may be exerted through a decrease in cyclin D1 and cdk4 levels (PMID:16601140)
- Mantle cell lymphoma should be very sensitive to targeted therapy aimed at functional inhibition of the cyclin D1/CDK4 complex. (PMID:16690963)
- There were no significant changes of CDK4 and E2F-1/4 expression in benzo(a)pyrene treated embryo lung fibroblasts. (PMID:16758952)
- cyclin D1/Cdk4 converts FOXM1c from an almost inactive form into a strong transactivator in G1-phase, i.e., just at the time point at which the transcriptional activity of FOXM1 is required for stimulation of the G1/S-transition (PMID:16913845)
- The data shows the expression and purification of an Hsp90-Cdc37-Cdk4 complex, defining its stoichiometry, and determining its 3D structure by single-particle electron microscopy. (PMID:16949366)
- significant cytoplasmic mislocalization of ordinarily nuclear RB in cells harboring Cdk4 mutations (PMID:17043357)
- Overexpression of p16 and CDK4 in the cytoplasm, as well as loss expression of p16 in the nucleus might be important in the evolution of colorectal carcinoma from adenoma and, of adenoma from normal epithelia. (PMID:17072968)
- findings confirm CDK4 overexpression is a frequent phenomenon in laryngeal carcinoma, which occurs at transcriptional level but not related to gene amplification or mutation, & suggest cooperation with CCND1 may be involved in laryngeal tumor progression (PMID:17139501)
- Sensitization towards TRAIL was due to the transcriptional downregulation of survivin (PMID:17304504)
- The expression level of cyclin D1 and CDK4 protein increased in human embryonic lung fibroblasts treated with quartz. (PMID:17374178)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cdk4 | ENSDARG00000087937 |
| mus_musculus | Cdk4 | ENSMUSG00000006728 |
| rattus_norvegicus | Cdk4 | ENSRNOG00000025602 |
Paralogs (26): CDKL3 (ENSG00000006837), CDKL5 (ENSG00000008086), CDK11A (ENSG00000008128), CDK14 (ENSG00000058091), CDK17 (ENSG00000059758), CDK13 (ENSG00000065883), CDKL1 (ENSG00000100490), CDK16 (ENSG00000102225), CDK6 (ENSG00000105810), PRP4K (ENSG00000112739), CDK18 (ENSG00000117266), CDK2 (ENSG00000123374), CDK8 (ENSG00000132964), CDK7 (ENSG00000134058), CDK9 (ENSG00000136807), CDK15 (ENSG00000138395), CDKL2 (ENSG00000138769), CDK19 (ENSG00000155111), CDK20 (ENSG00000156345), CDK5 (ENSG00000164885), CDK12 (ENSG00000167258), CDK1 (ENSG00000170312), CDK10 (ENSG00000185324), CDKL4 (ENSG00000205111), CDK11B (ENSG00000248333), CDK3 (ENSG00000250506)
Protein
Protein identifiers
Cyclin-dependent kinase 4 — P11802 (reviewed: P11802)
Alternative names: Cell division protein kinase 4, PSK-J3
All UniProt accessions (10): P11802, F8VTV8, F8VWX7, F8VXD2, F8VYH9, F8VYY1, F8VZ13, F8VZ51, F8VZZ0, F8W1L8
UniProt curated annotations — full annotation on UniProt →
Function. Ser/Thr-kinase component of cyclin D-CDK4 (DC) complexes that phosphorylate and inhibit members of the retinoblastoma (RB) protein family including RB1 and regulate the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complexes and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also phosphorylates SMAD3 in a cell-cycle-dependent manner and represses its transcriptional activity. Component of the ternary complex, cyclin D/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.
Subunit / interactions. Component of the D-CDK4 complex, composed of CDK4 and some D-type G1 cyclin (CCND1, CCND2 or CCND3). Interacts directly in the complex with CCND1, CCND2 or CCND3. Interacts with SEI1 and ZNF655. Forms a ternary complex, cyclin D-CDK4-CDKN1B, involved in modulating CDK4 enzymatic activity. Interacts directly with CDKN1B (phosphorylated on ‘Tyr-88’ and ‘Tyr-89’); the interaction allows assembly of the cyclin D-CDK4 complex, Thr-172 phosphorylation, nuclear translocation and enhances the cyclin D-CDK4 complex activity. CDK4 activity is either inhibited or enhanced depending on stoichiometry of complex. The non-tyrosine-phosphorylated form of CDKN1B prevents T-loop phosphorylation of CDK4 producing inactive CDK4. Interacts (unphosphorylated form) with CDK2. Also forms ternary complexes with CDKN1A or CDKN2A. Interacts directly with CDKN1A (via its N-terminal); the interaction promotes the assembly of the cyclin D-CDK4 complex, its nuclear translocation and promotes the cyclin D-dependent enzyme activity of CDK4. Interacts with CCND1; the interaction is prevented with the binding of CCND1 to INSM1 during cell cycle progression. Probably forms a complex composed of chaperones HSP90 and HSP70, co-chaperones CDC37, PPP5C, TSC1 and client protein TSC2, CDK4, AKT, RAF1 and NR3C1; this complex does not contain co-chaperones STIP1/HOP and PTGES3/p23. Interacts with CEBPA (when phosphorylated). Interacts with FNIP1 and FNIP2.
Subcellular location. Cytoplasm. Nucleus. Nucleus membrane.
Post-translational modifications. Phosphorylation at Thr-172 is required for enzymatic activity. Phosphorylated, in vitro, at this site by CCNH-CDK7, but, in vivo, appears to be phosphorylated by a proline-directed kinase. In the cyclin D-CDK4-CDKN1B complex, this phosphorylation and consequent CDK4 enzyme activity, is dependent on the tyrosine phosphorylation state of CDKN1B. Thus, in proliferating cells, CDK4 within the complex is phosphorylated on Thr-172 in the T-loop. In resting cells, phosphorylation on Thr-172 is prevented by the non-tyrosine-phosphorylated form of CDKN1B.
Disease relevance. Melanoma, cutaneous malignant 3 (CMM3) [MIM:609048] A malignant neoplasm of melanocytes, arising de novo or from a pre-existing benign nevus, which occurs most often in the skin but may also involve other sites. Disease susceptibility is associated with variants affecting the gene represented in this entry.
Activity regulation. Both phosphorylation at Thr-172 and binding of a D-type cyclin are necessary for enzymatic activity. Full activation of the cyclin-D-CDK4 complex appears to require other factors such as recruitment of the substrate via a substrate recruitment motif, and/or formation of the CDKN1B ternary complex. Inhibited by INK4 family members. In resting cells, the non-tyrosine-phosphorylated form of CDKN1B prevents phosphorylation at Thr-172 and inactivation, while, in proliferating cells, tyrosine phosphorylation of CDKN1B allows phosphorylation of Thr-172 of CDK4 and subsequent activation.
Similarity. Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P11802-1 | 1 | yes |
| P11802-2 | 2 |
RefSeq proteins (1): NP_000066* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR008271 | Ser/Thr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR050108 | CDK | Family |
Pfam: PF00069
Enzyme classification (BRENDA):
- EC 2.7.11.22 — cyclin-dependent kinase (BRENDA: 49 organisms, 441 substrates, 555 inhibitors, 8 Km, 4 kcat entries)
Substrate kinetics (BRENDA)
4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ADAQHATPPKKKRKVEDPKDF | 0.046–0.521 | 2 |
| ATP | 0.0052–0.017 | 2 |
| FIN1 | 0.003 | 1 |
| PKTPKKAKKL | 0.0029 | 1 |
Catalyzed reactions (Rhea), 2 shown:
- L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
- L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)
UniProt features (53 total): helix 16, strand 13, sequence variant 5, turn 5, mutagenesis site 3, binding site 2, modified residue 2, initiator methionine 1, chain 1, sequence conflict 1, domain 1, region of interest 1, active site 1, splice variant 1
Structure
Experimental structures (PDB)
15 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9CSK | X-RAY DIFFRACTION | 2.25 |
| 2W96 | X-RAY DIFFRACTION | 2.3 |
| 6P8E | X-RAY DIFFRACTION | 2.3 |
| 2W9Z | X-RAY DIFFRACTION | 2.45 |
| 7SJ3 | X-RAY DIFFRACTION | 2.51 |
| 2W99 | X-RAY DIFFRACTION | 2.8 |
| 6P8G | X-RAY DIFFRACTION | 2.8 |
| 2W9F | X-RAY DIFFRACTION | 2.85 |
| 6P8F | X-RAY DIFFRACTION | 2.89 |
| 3G33 | X-RAY DIFFRACTION | 3 |
| 6P8H | X-RAY DIFFRACTION | 3.19 |
| 5FWK | ELECTRON MICROSCOPY | 3.9 |
| 5FWP | ELECTRON MICROSCOPY | 7.2 |
| 5FWM | ELECTRON MICROSCOPY | 8 |
| 5FWL | ELECTRON MICROSCOPY | 9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P11802-F1 | 87.56 | 0.68 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 140 (proton acceptor)
Ligand- & substrate-binding residues (2): 12–20; 35
Post-translational modifications (2): 2, 172
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 172 | weak enzyme activity towards rb1, but no effect on binding of ccdn1 nor ccdn3. |
| 172 | retains moderate enzyme activity. |
| 173 | no effect on in vitro phosphorylation by cdk7. greatly reduced t-172 phosphorylation and enzyme activity. |
Function
Pathways and Gene Ontology
Reactome pathways
50 pathways
| ID | Pathway |
|---|---|
| R-HSA-187577 | SCF(Skp2)-mediated degradation of p27/p21 |
| R-HSA-2559580 | Oxidative Stress Induced Senescence |
| R-HSA-2559582 | Senescence-Associated Secretory Phenotype (SASP) |
| R-HSA-2559585 | Oncogene Induced Senescence |
| R-HSA-3214858 | RMTs methylate histone arginines |
| R-HSA-381340 | Transcriptional regulation of white adipocyte differentiation |
| R-HSA-69231 | Cyclin D associated events in G1 |
| R-HSA-75815 | Ubiquitin-dependent degradation of Cyclin D |
| R-HSA-8849470 | PTK6 Regulates Cell Cycle |
| R-HSA-8878166 | Transcriptional regulation by RUNX2 |
| R-HSA-912446 | Meiotic recombination |
| R-HSA-9616222 | Transcriptional regulation of granulopoiesis |
| R-HSA-9630791 | Evasion of Oncogene Induced Senescence Due to Defective p16INK4A binding to CDK4 |
| R-HSA-9630794 | Evasion of Oncogene Induced Senescence Due to Defective p16INK4A binding to CDK4 and CDK6 |
| R-HSA-9632697 | Evasion of Oxidative Stress Induced Senescence Due to Defective p16INK4A binding to CDK4 |
| R-HSA-9632700 | Evasion of Oxidative Stress Induced Senescence Due to Defective p16INK4A binding to CDK4 and CDK6 |
| R-HSA-9661069 | Defective binding of RB1 mutants to E2F1,(E2F2, E2F3) |
| R-HSA-9754119 | Drug-mediated inhibition of CDK4/CDK6 activity |
| R-HSA-9929491 | SPOP-mediated proteasomal degradation of PD-L1(CD274) |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1474165 | Reproduction |
| R-HSA-1500620 | Meiosis |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1640170 | Cell Cycle |
| R-HSA-1643685 | Disease |
| R-HSA-212436 | Generic Transcription Pathway |
| R-HSA-2262752 | Cellular responses to stress |
| R-HSA-2559583 | Cellular Senescence |
| R-HSA-3247509 | Chromatin modifying enzymes |
| R-HSA-453279 | Mitotic G1 phase and G1/S transition |
MSigDB gene sets: 525 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_UP, REACTOME_TRANSCRIPTIONAL_REGULATION_OF_WHITE_ADIPOCYTE_DIFFERENTIATION, REACTOME_MEIOTIC_RECOMBINATION, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, MODULE_451, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_INTERLEUKIN_4, GOBP_RESPONSE_TO_PEPTIDE, GOBP_CELLULAR_RESPONSE_TO_LIPID, PAL_PRMT5_TARGETS_UP, HOFMANN_CELL_LYMPHOMA_UP, REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21, GOBP_CELLULAR_RESPONSE_TO_BIOTIC_STIMULUS, GOBP_POSITIVE_REGULATION_OF_FIBROBLAST_PROLIFERATION, CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN
GO Biological Process (17): G1/S transition of mitotic cell cycle (GO:0000082), signal transduction (GO:0007165), positive regulation of cell population proliferation (GO:0008284), response to xenobiotic stimulus (GO:0009410), regulation of G2/M transition of mitotic cell cycle (GO:0010389), regulation of gene expression (GO:0010468), positive regulation of G2/M transition of mitotic cell cycle (GO:0010971), positive regulation of fibroblast proliferation (GO:0048146), cell division (GO:0051301), regulation of cell cycle (GO:0051726), regulation of transcription initiation by RNA polymerase II (GO:0060260), regulation of type B pancreatic cell proliferation (GO:0061469), cellular response to lipopolysaccharide (GO:0071222), cellular response to interleukin-4 (GO:0071353), cellular response to phorbol 13-acetate 12-myristate (GO:1904628), cellular response to ionomycin (GO:1904637), protein phosphorylation (GO:0006468)
GO Molecular Function (11): cyclin-dependent protein serine/threonine kinase activity (GO:0004693), ATP binding (GO:0005524), cyclin-dependent protein serine/threonine kinase regulator activity (GO:0016538), cyclin binding (GO:0030332), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein serine/threonine kinase activity (GO:0004674), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (14): cyclin-dependent protein kinase holoenzyme complex (GO:0000307), chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654), transcription regulator complex (GO:0005667), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), bicellular tight junction (GO:0005923), nuclear membrane (GO:0031965), cyclin D1-CDK4 complex (GO:0097128), cyclin D2-CDK4 complex (GO:0097129), cyclin D3-CDK4 complex (GO:0097130), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-16 pathways:
| Category | Pathways |
|---|---|
| Cellular Senescence | 3 |
| Evasion of Oncogene Induced Senescence Due to p16INK4A Defects | 2 |
| Evasion of Oxidative Stress Induced Senescence Due to p16INK4A Defects | 2 |
| Cyclin E associated events during G1/S transition | 1 |
| Cyclin A:Cdk2-associated events at S phase entry | 1 |
| Chromatin modifying enzymes | 1 |
| Adipogenesis | 1 |
| G1 Phase | 1 |
| S Phase | 1 |
| Signaling by PTK6 | 1 |
| Generic Transcription Pathway | 1 |
| Meiosis | 1 |
| Developmental Biology | 1 |
| Aberrant regulation of mitotic G1/S transition in cancer due to RB1 defects | 1 |
| Cyclin D associated events in G1 | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| cyclin-dependent protein kinase holoenzyme complex | 3 |
| cellular process | 2 |
| regulation of cellular process | 2 |
| G2/M transition of mitotic cell cycle | 2 |
| cellular response to lipid | 2 |
| protein kinase activity | 2 |
| nuclear lumen | 2 |
| mitotic cell cycle | 1 |
| mitotic cell cycle phase transition | 1 |
| cell cycle G1/S phase transition | 1 |
| cell communication | 1 |
| signaling | 1 |
| cellular response to stimulus | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| response to chemical | 1 |
| regulation of mitotic cell cycle phase transition | 1 |
| regulation of cell cycle G2/M phase transition | 1 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| regulation of G2/M transition of mitotic cell cycle | 1 |
| positive regulation of mitotic cell cycle phase transition | 1 |
| positive regulation of cell cycle G2/M phase transition | 1 |
| positive regulation of cell population proliferation | 1 |
| fibroblast proliferation | 1 |
| regulation of fibroblast proliferation | 1 |
| cell cycle | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription initiation at RNA polymerase II promoter | 1 |
| regulation of DNA-templated transcription initiation | 1 |
| type B pancreatic cell proliferation | 1 |
| regulation of epithelial cell proliferation | 1 |
| response to lipopolysaccharide | 1 |
| cellular response to molecule of bacterial origin | 1 |
| cellular response to oxygen-containing compound | 1 |
| response to interleukin-4 | 1 |
| cellular response to cytokine stimulus | 1 |
| cellular response to alcohol | 1 |
Protein interactions and networks
STRING
7256 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CDK4 | CCND1 | P24385 | 999 |
| CDK4 | CDKN2A | P42771 | 999 |
| CDK4 | CCNL2 | Q96S94 | 999 |
| CDK4 | CDKN1A | P38936 | 998 |
| CDK4 | CDKN2B | P42772 | 998 |
| CDK4 | CCND2 | P30279 | 997 |
| CDK4 | CCND3 | P30281 | 997 |
| CDK4 | CDKN2C | P42773 | 997 |
| CDK4 | CDKN2D | P55273 | 997 |
| CDK4 | CDC37 | Q16543 | 996 |
| CDK4 | CDKN1B | P46527 | 996 |
| CDK4 | CCNA2 | P20248 | 996 |
| CDK4 | HSP90AB1 | P08238 | 992 |
| CDK4 | HSP90AA1 | P07900 | 990 |
| CDK4 | RB1 | P06400 | 985 |
IntAct
438 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CDK4 | CCND1 | psi-mi:“MI:0915”(physical association) | 0.990 |
| CCND1 | CDK4 | psi-mi:“MI:0915”(physical association) | 0.990 |
| CCND1 | CDK4 | psi-mi:“MI:0407”(direct interaction) | 0.990 |
| CDK4 | CCND1 | psi-mi:“MI:0914”(association) | 0.990 |
| CCND3 | CDK4 | psi-mi:“MI:0915”(physical association) | 0.980 |
| CDK4 | CCND3 | psi-mi:“MI:0915”(physical association) | 0.980 |
| CDK4 | CCND3 | psi-mi:“MI:0914”(association) | 0.980 |
BioGRID (718): CDK4 (Affinity Capture-Western), CDK4 (Affinity Capture-Western), CDK4 (Two-hybrid), CDK4 (Two-hybrid), CDKN2C (Two-hybrid), CDKN2D (Two-hybrid), HOOK1 (Two-hybrid), RB1 (Biochemical Activity), HIST1H1A (Biochemical Activity), RB1 (Biochemical Activity), CDK4 (Affinity Capture-MS), CDK4 (Affinity Capture-MS), CDK4 (Affinity Capture-MS), CDK4 (Affinity Capture-MS), HSP90AA1 (Affinity Capture-MS)
ESM2 similar proteins: A8WIP6, B2MVY4, G5ECH7, O74456, P00546, P04551, P11802, P20911, P25859, P30285, P35426, P38973, P48609, P49615, P50613, P51166, P51952, P53778, P54119, P54664, P54665, P54666, P79432, Q00534, Q00535, Q00646, Q02399, Q03114, Q03147, Q06309, Q0J4I1, Q2PQN9, Q2QSL4, Q2V419, Q32KY4, Q38772, Q38774, Q38775, Q4KM34, Q5R7I7
Diamond homologs: B2MVY4, G5ECH7, O35832, O55076, O60145, O74456, O96821, P00546, P04551, P06493, P11440, P11802, P13863, P17157, P23111, P23437, P23572, P23573, P24033, P24100, P24923, P24941, P29618, P29619, P30285, P34112, P34117, P35426, P35567, P38973, P39951, P43063, P43450, P48609, P48734, P48963, P49615, P51166, P51958, P52389
SIGNOR signaling
73 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MYC | “up-regulates quantity by expression” | CDK4 | “transcriptional regulation” |
| CDK4 | down-regulates | RB1 | phosphorylation |
| CDKN2A | down-regulates | CDK4 | binding |
| CDK4 | down-regulates | BRCA1 | phosphorylation |
| CDK4 | down-regulates | RASSF1 | phosphorylation |
| CDK4 | up-regulates | PELP1 | phosphorylation |
| CDK4 | down-regulates | MEF2A | binding |
| CDK4 | down-regulates | MEF2C | binding |
| CDK4 | down-regulates | MEF2C | |
| CDK4 | down-regulates | MEF2D | binding |
| CDK4 | down-regulates | MYOD1 | binding |
| CDK4 | down-regulates | MYOG | binding |
| CDK4 | up-regulates | FOXM1 | phosphorylation |
| YES1 | down-regulates | CDK4 | phosphorylation |
| CDK4 | “down-regulates activity” | SMAD3 | phosphorylation |
| CDK4 | down-regulates | SMAD3 | phosphorylation |
| CDK4 | down-regulates | RUNX3 | phosphorylation |
| 4-(2,6-dichlorobenzamido)-N-(piperidin-4-yl)-pyrazole-3-carboxamide | down-regulates | CDK4 | “chemical inhibition” |
| alvocidib | down-regulates | CDK4 | “chemical inhibition” |
| “alvocidib hydrochloride” | down-regulates | CDK4 | “chemical inhibition” |
| CCND1 | up-regulates | CDK4 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 77 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| G1 Phase | 13 | 88.3× | 8e-21 |
| Cyclin D associated events in G1 | 15 | 60.3× | 5e-21 |
| Defective binding of RB1 mutants to E2F1,(E2F2, E2F3) | 5 | 54.7× | 2e-06 |
| Mitotic G1 phase and G1/S transition | 14 | 44.5× | 8e-18 |
| Aberrant regulation of mitotic cell cycle due to RB1 defects | 5 | 35.2× | 1e-05 |
| Diseases of mitotic cell cycle | 5 | 34.0× | 2e-05 |
| G1/S Transition | 7 | 28.1× | 4e-07 |
| Cyclin E associated events during G1/S transition | 5 | 24.6× | 6e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of G1/S transition of mitotic cell cycle | 6 | 33.9× | 8e-06 |
| G1/S transition of mitotic cell cycle | 10 | 28.3× | 2e-09 |
| regulation of G1/S transition of mitotic cell cycle | 6 | 25.9× | 3e-05 |
| negative regulation of cell growth | 5 | 10.1× | 6e-03 |
| Wnt signaling pathway | 6 | 8.4× | 5e-03 |
| regulation of cell cycle | 8 | 8.4× | 7e-04 |
| cell division | 11 | 7.2× | 7e-05 |
| protein stabilization | 7 | 6.6× | 5e-03 |
Disease & clinical
Cancer significance
From CIViC — curated cancer-variant interpretation:
CDK4, along with its partner CDK6, are key players in cell cycle progression. The complex has been implicated in a number of cancer types, and is the focus of therapeutic research and development. One targeted therapy for CDK inhibition is palbociclib, which may slow the growth of advanced stage breast cancers. It has also been shown, in mouse, that CDK inhibition may sensitize mutant PIK3CA tumors to PI3K inhibitors.
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 1 cancer types — MEL.
Clinical variants and AI predictions
ClinVar
1127 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 0 |
| Uncertain significance | 595 |
| Likely benign | 268 |
| Benign | 48 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 16928 | NM_000075.4(CDK4):c.70C>T (p.Arg24Cys) | Pathogenic |
| 16929 | NM_000075.4(CDK4):c.71G>A (p.Arg24His) | Pathogenic |
| 1801589 | NM_000075.4(CDK4):c.279dup (p.Glu94Ter) | Pathogenic |
SpliceAI
1146 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:57749155:C:A | donor_gain | 1.0000 |
| 12:57749452:A:AC | donor_gain | 1.0000 |
| 12:57749453:C:CC | donor_gain | 1.0000 |
| 12:57749453:CT:C | donor_gain | 1.0000 |
| 12:57750654:A:AC | donor_gain | 1.0000 |
| 12:57750655:C:CC | donor_gain | 1.0000 |
| 12:57750657:TTCG:T | donor_gain | 1.0000 |
| 12:57750921:A:AC | donor_gain | 1.0000 |
| 12:57750922:C:CC | donor_gain | 1.0000 |
| 12:57750922:CCA:C | donor_gain | 1.0000 |
| 12:57750947:G:C | donor_gain | 1.0000 |
| 12:57751202:CTCA:C | donor_loss | 1.0000 |
| 12:57751203:TCACC:T | donor_loss | 1.0000 |
| 12:57751204:CACC:C | donor_loss | 1.0000 |
| 12:57751205:A:AT | donor_loss | 1.0000 |
| 12:57751206:C:CG | donor_loss | 1.0000 |
| 12:57748614:TTTC:T | acceptor_gain | 0.9900 |
| 12:57748618:C:CC | acceptor_gain | 0.9900 |
| 12:57748618:C:G | acceptor_loss | 0.9900 |
| 12:57748619:T:C | acceptor_loss | 0.9900 |
| 12:57749154:T:A | donor_gain | 0.9900 |
| 12:57749176:CAGTA:C | donor_loss | 0.9900 |
| 12:57749177:AGTAC:A | donor_loss | 0.9900 |
| 12:57749178:GTACC:G | donor_loss | 0.9900 |
| 12:57749179:TACC:T | donor_loss | 0.9900 |
| 12:57749180:A:AT | donor_loss | 0.9900 |
| 12:57749181:C:CA | donor_loss | 0.9900 |
| 12:57749198:C:CA | donor_gain | 0.9900 |
| 12:57749220:C:CT | donor_gain | 0.9900 |
| 12:57749221:C:CT | donor_gain | 0.9900 |
AlphaMissense
1940 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:57750971:G:C | D158E | 1.000 |
| 12:57750971:G:T | D158E | 1.000 |
| 12:57750972:T:A | D158V | 1.000 |
| 12:57750972:T:G | D158A | 1.000 |
| 12:57750973:C:G | D158H | 1.000 |
| 12:57751025:A:C | D140E | 1.000 |
| 12:57751025:A:T | D140E | 1.000 |
| 12:57751026:T:A | D140V | 1.000 |
| 12:57751026:T:C | D140G | 1.000 |
| 12:57751026:T:G | D140A | 1.000 |
| 12:57751029:C:G | R139P | 1.000 |
| 12:57751613:C:A | K35N | 1.000 |
| 12:57751613:C:G | K35N | 1.000 |
| 12:57749289:A:G | W238R | 0.999 |
| 12:57749289:A:T | W238R | 0.999 |
| 12:57750682:A:C | C202W | 0.999 |
| 12:57750683:C:T | C202Y | 0.999 |
| 12:57750686:C:T | G201D | 0.999 |
| 12:57750694:C:A | W198C | 0.999 |
| 12:57750694:C:G | W198C | 0.999 |
| 12:57750696:A:G | W198R | 0.999 |
| 12:57750696:A:T | W198R | 0.999 |
| 12:57750702:C:G | D196H | 0.999 |
| 12:57750740:G:T | P183H | 0.999 |
| 12:57750750:A:G | Y180H | 0.999 |
| 12:57750758:G:A | T177I | 0.999 |
| 12:57750960:G:T | A162D | 0.999 |
| 12:57750963:A:G | L161P | 0.999 |
| 12:57750966:C:T | G160D | 0.999 |
| 12:57750967:C:G | G160R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000052939 (12:57751699 C>A,G,T), RS1000416664 (12:57747962 G>A,C), RS1000870693 (12:57748322 C>G), RS1001155355 (12:57749593 T>C), RS1001309614 (12:57752223 G>A), RS1002207037 (12:57749098 C>A,T), RS1002814184 (12:57753200 C>A,G), RS1002943409 (12:57753214 T>G), RS1003172820 (12:57752727 T>G), RS1003208178 (12:57747486 G>A), RS1003386519 (12:57753451 G>A), RS1004281478 (12:57751102 G>A,C), RS1004656804 (12:57750297 G>A,T), RS1004724115 (12:57748846 C>T), RS1005006906 (12:57749964 T>C)
Disease associations
OMIM: gene MIM:123829 | disease phenotypes: MIM:609048, MIM:613659, MIM:621507
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| melanoma, cutaneous malignant, susceptibility to, 3 | Definitive | Autosomal dominant |
| malignant pancreatic neoplasm | Moderate | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| melanoma, cutaneous malignant, susceptibility to, 3 | Definitive | AD |
Mondo (7): familial melanoma (MONDO:0018961), hereditary neoplastic syndrome (MONDO:0015356), melanoma, cutaneous malignant, susceptibility to, 3 (MONDO:0012183), gastric cancer (MONDO:0001056), diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype (MONDO:0858939), microcephaly 31, primary, autosomal recessive (MONDO:0980991), malignant pancreatic neoplasm (MONDO:0009831)
Orphanet (2): Familial melanoma (Orphanet:618), Inherited cancer-predisposing syndrome (Orphanet:140162)
HPO phenotypes
19 total (19 of 19 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000488 | Retinopathy |
| HP:0000958 | Dry skin |
| HP:0001054 | Numerous nevi |
| HP:0001062 | Atypical nevus |
| HP:0001074 | Atypical nevi in non-sun exposed areas |
| HP:0001480 | Freckling |
| HP:0001482 | Subcutaneous nodule |
| HP:0001595 | Abnormal hair morphology |
| HP:0002071 | Abnormality of extrapyramidal motor function |
| HP:0002579 | Gastrointestinal dysmotility |
| HP:0002861 | Melanoma |
| HP:0002894 | Neoplasm of the pancreas |
| HP:0003764 | Nevus |
| HP:0006753 | Neoplasm of the stomach |
| HP:0012056 | Cutaneous melanoma |
| HP:0012211 | Abnormal renal physiology |
| HP:0100013 | Neoplasm of the breast |
| HP:0100763 | Abnormality of the lymphatic system |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000987_14 | Celiac disease or Rheumatoid arthritis | 4.000000e-06 |
| GCST002318_6 | Rheumatoid arthritis | 1.000000e-07 |
| GCST002318_66 | Rheumatoid arthritis | 7.000000e-08 |
| GCST006959_107 | Rheumatoid arthritis | 1.000000e-07 |
| GCST006959_36 | Rheumatoid arthritis | 9.000000e-08 |
| GCST010703_209 | Brain morphology (MOSTest) | 2.000000e-11 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004346 | neuroimaging measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (19): CHEMBL1907601 (PROTEIN COMPLEX), CHEMBL2095942 (PROTEIN COMPLEX GROUP), CHEMBL2111326 (SELECTIVITY GROUP), CHEMBL3038472 (PROTEIN COMPLEX), CHEMBL3038517 (PROTEIN FAMILY), CHEMBL3301385 (PROTEIN COMPLEX), CHEMBL331 (SINGLE PROTEIN), CHEMBL3559691 (PROTEIN FAMILY), CHEMBL3885548 (PROTEIN COMPLEX), CHEMBL3885553 (PROTEIN FAMILY)
Molecules with ChEMBL bioactivity
56 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 260,604 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL189963 | PALBOCICLIB | 4 | 13,102 |
| CHEMBL3301610 | ABEMACICLIB | 4 | 7,045 |
| CHEMBL3545110 | RIBOCICLIB | 4 | 8,018 |
| CHEMBL3894860 | TRILACICLIB | 4 | 2,086 |
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL2028663 | DABRAFENIB | 4 | 12,430 |
| CHEMBL2403108 | CERITINIB | 4 | 8,551 |
| CHEMBL3301612 | ENCORAFENIB | 4 | 4,624 |
| CHEMBL3301622 | GILTERITINIB | 4 | 2,395 |
| CHEMBL502835 | NINTEDANIB | 4 | 8,545 |
| CHEMBL535 | SUNITINIB | 4 | 79,020 |
| CHEMBL2103840 | DINACICLIB | 3 | 2,257 |
| CHEMBL3904602 | LEROCICLIB | 3 | 1,012 |
| CHEMBL428690 | ALVOCIDIB | 3 | 27,781 |
| CHEMBL50 | QUERCETIN | 3 | 74,559 |
| CHEMBL4802161 | DALPICICLIB | 3 | 423 |
| CHEMBL522892 | DOVITINIB | 3 | 4,944 |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL91829 | RUBOXISTAURIN | 3 | 77 |
| CHEMBL1276127 | INDIRUBIN | 2 | 181 |
| CHEMBL14762 | SELICICLIB | 2 | |
| CHEMBL1738757 | REBASTINIB | 2 | |
| CHEMBL3115681 | NARAZACICLIB | 2 | |
| CHEMBL3545283 | RIVICICLIB | 2 | |
| CHEMBL384304 | RG-547 | 2 | |
| CHEMBL3905910 | VORUCICLIB | 2 | |
| CHEMBL4067549 | ULECACICLIB | 2 | |
| CHEMBL4277900 | CROZBACICLIB | 2 | |
| CHEMBL4442620 | RONICICLIB | 2 | |
| CHEMBL4446357 | EBVACICLIB | 2 |
Clinical evidence (CIViC)
Drug × variant × indication: 5 predictive associations from 6 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| CDK4 Amplification | Palbociclib | Liposarcoma | Sensitivity/Response | CIViC B | EID1366 +1 |
| CDK4 EXPRESSION | Alpelisib | Estrogen-receptor Positive Breast Cancer | Sensitivity/Response | CIViC D | EID264 |
| CDK4 EXPRESSION | Palbociclib | Sarcoma | Sensitivity/Response | CIViC D | EID4872 |
| CDK4 EXPRESSION | Ribociclib + Dexamethasone | Childhood B-cell Acute Lymphoblastic Leukemia | Sensitivity/Response | CIViC D | EID7798 |
| CDK4 R24C | Palbociclib | Skin Melanoma | Sensitivity/Response | CIViC D | EID1376 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
2 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs2069502 | Other | 3 | somatropin recombinant | Turner Syndrome |
| rs2270777 | Other | 3 | somatropin recombinant |
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2069502 | AGAP2, CDK4, MARCHF9, TSPAN31 | 3 | 2.00 | 1 | somatropin recombinant |
| rs2270777 | CDK4 | 3 | 2.00 | 1 | somatropin recombinant |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — CDK4 subfamily
Most potent curated ligand interactions (43 total), top 25:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| trilaciclib | Inhibition | 10.0 | pKd |
| culmerciclib | Inhibition | 9.46 | pIC50 |
| cimpuciclib | Inhibition | 9.31 | pIC50 |
| atirmociclib | Inhibition | 9.22 | pKi |
| lerociclib | Inhibition | 9.0 | pIC50 |
| R547 | Inhibition | 9.0 | pKi |
| PF-06873600 | Inhibition | 8.86 | pKi |
| tibremciclib | Inhibition | 8.72 | pIC50 |
| inixaciclib | Inhibition | 8.7 | pIC50 |
| abemaciclib | Inhibition | 8.7 | pIC50 |
| crozbaciclib | Inhibition | 8.52 | pIC50 |
| ulecaciclib | Inhibition | 8.52 | pKi |
| bireociclib | Inhibition | 8.52 | pIC50 |
| narazaciclib | Inhibition | 8.41 | pIC50 |
| RGB-286638 | Inhibition | 8.4 | pIC50 |
| Cdk4 inhibitor III | Inhibition | 8.22 | pIC50 |
| vustanaciclib | Inhibition | 8.0 | pIC50 |
| ribociclib | Inhibition | 8.0 | pIC50 |
| dalpiciclib | Inhibition | 7.96 | pIC50 |
| PRT3645 | Inhibition | 7.7 | pIC50 |
| Ro-0505124 | Inhibition | 7.7 | pIC50 |
| BSJ-03-204 | Inhibition | 7.57 | pIC50 |
| CP-10 | Inhibition | 7.52 | pIC50 |
| palbociclib | Inhibition | 7.36 | pIC50 |
| BSJ-04-132 | Inhibition | 7.3 | pIC50 |
Binding affinities (BindingDB)
1729 measured of 2813 human assays (2876 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 4-[[6-(2,2-difluoroethyl)-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-7-oxopyrido[2,3-d]pyrimidin-2-yl]amino]-N-methylpiperidine-1-sulfonamide | KI | 0.09 nM | US-10233188: CDK2/4/6 inhibitors |
| (3S,4S)-4-[[5-chloro-4-(5-fluoro-1,1-dimethyl-2,3-dihydropyrrolo[1,2-a]benzimidazol-7-yl)pyrimidin-2-yl]amino]-1-methylsulfonylpiperidin-3-ol | KI | 0.1 nM | US-10766884: Cyclin dependent kinase inhibitors |
| 6-(2-hydroxyethyl)-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | KI | 0.11 nM | US-10233188: CDK2/4/6 inhibitors |
| 8-cyclopentyl-N-(2-piperazin-1-ylpyrimidin-5-yl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 0.13 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 6-chloro-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-{[1-(methylsulfonyl)-piperidin-4-yl]amino}pyrido[2,3-d]pyrimidin-7(8H)-one | KI | 0.16 nM | US-10233188: CDK2/4/6 inhibitors |
| 2-[8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]-7-oxopyrido[2,3-d]pyrimidin-6-yl]acetonitrile | KI | 0.16 nM | US-10233188: CDK2/4/6 inhibitors |
| 8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-{[1-(methylsulfonyl)piperidin-4-yl]amino}pyrido[2,3-d]pyrimidin-7(8H)-one | KI | 0.2 nM | US-10233188: CDK2/4/6 inhibitors |
| 8-[(1R,3R)-3-hydroxycyclohexyl]-2-{[1-(methylsulfonyl)piperidin-4-yl]-amino}pyrido[2,3-d]pyrimidin-7(8H)-one | KI | 0.26 nM | US-10233188: CDK2/4/6 inhibitors |
| 8-phenyl-N-(4-piperazin-1-ylphenyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 0.32 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-(4-piperazin-1-ylphenyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 0.45 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 4-[[6-fluoro-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-7-oxopyrido[2,3-d]pyrimidin-2-yl]amino]-N-methylpiperidine-1-sulfonamide | KI | 0.48 nM | US-10233188: CDK2/4/6 inhibitors |
| 8-Cyclopentyl-2-[4-(2-diethylaminoethoxy)phenylamino]-8H-pyrido[2,3-d]pyrimidin-7-one | IC50 | 0.7 nM | |
| 2-[[(3S,5R)-3,5-dimethylmorpholin-4-yl]methyl]-7-[5-fluoro-2-[[(3S,4R)-3-hydroxyoxan-4-yl]amino]pyrimidin-4-yl]-3-methyl-1-propan-2-ylquinolin-4-one | IC50 | 0.8 nM | US-20250136586: Substituted 7-(Pyrimidin-4-yl)Quinolin-4(1H)-One Compounds as Cyclin Dependent Kinase Inhibitors |
| 8-cyclopentyl-N-(4-piperazin-1-ylphenyl)-4,6,8,10-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 0.83 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-(5-methyl-6-piperazin-1-yl-3-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 0.91 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-(2-bicyclo[2.2.1]heptanyl)-N-(5-piperazin-1-yl-2-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 0.94 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-[6-[4-(dimethylamino)piperidin-1-yl]-3-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 0.97 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-[6-[4-(dimethylamino)piperidin-1-yl]pyridazin-3-yl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 9-cyclohexyl-N-(4-piperazin-1-ylphenyl)pyrimido[4,5-b]indol-2-amine | IC50 | 1 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-[6-[4-(diethylamino)piperidin-1-yl]pyridazin-3-yl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 10-chloro-8-cyclopentyl-N-[5-[4-(dimethylamino)piperidin-1-yl]-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 2-[4-[[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]-3-pyridinyl]methyl]piperazin-1-yl]acetic acid | IC50 | 1 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| (3R,4R)-1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]-3-(dimethylamino)piperidin-4-ol | IC50 | 1 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 5-{[(5-tert-butyl-1,3-oxazol-2-yl)methyl]sulfanyl}-N-(pyrimidin-4-yl)-1,3-thiazol-2-amine | IC50 | 1 nM | |
| 4-[(4-{pyrazolo[1,5-a]pyridazin-3-yl}pyrimidin-2-yl)amino]benzonitrile | IC50 | 1 nM | |
| N-(3,4-dichlorophenyl)-4-{pyrazolo[1,5-a]pyridazin-3-yl}pyrimidin-2-amine | IC50 | 1 nM | |
| N-(3,5-difluorophenyl)-4-{pyrazolo[1,5-a]pyridazin-3-yl}pyrimidin-2-amine | IC50 | 1 nM | |
| 2-[[(3S,5S)-3,5-dimethylmorpholin-4-yl]methyl]-7-[5-fluoro-2-[[(3S,4R)-3-hydroxyoxan-4-yl]amino]pyrimidin-4-yl]-3-methyl-1-propan-2-ylquinolin-4-one | IC50 | 1.1 nM | US-20250136586: Substituted 7-(Pyrimidin-4-yl)Quinolin-4(1H)-One Compounds as Cyclin Dependent Kinase Inhibitors |
| 8-cyclopentyl-N-[5-(4-propan-2-ylpiperazin-1-yl)-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.2 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-(4-methylcyclohexyl)-N-(5-piperazin-1-yl-2-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.2 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 9-cyclohexyl-N-(5-piperazin-1-yl-2-pyridinyl)pyrimido[4,5-b]indol-2-amine | IC50 | 1.3 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| N-[5-[3-(aminomethyl)piperidin-1-yl]-2-pyridinyl]-8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.3 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-[5-(1,2,3,6-tetrahydropyridin-4-yl)-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.3 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| (2R)-3-[[1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]piperidin-4-yl]amino]propane-1,2-diol | IC50 | 1.3 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 2-[4-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]piperazin-1-yl]acetic acid | IC50 | 1.39 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-(6-piperazin-1-yl-3-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.4 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-[5-[4-(methylamino)piperidin-1-yl]-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.4 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| [6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]-3-pyridinyl]-piperazin-1-ylmethanone | IC50 | 1.4 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 3-[[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]amino]propan-1-ol | IC50 | 1.4 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 6-chloro-8-cyclopentyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | KI | 1.4 nM | US-10233188: CDK2/4/6 inhibitors |
| 8-cyclopentyl-N-(6-piperazin-1-ylpyridazin-3-yl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.5 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| (2S)-2-[[1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]piperidin-4-yl]amino]propan-1-ol | IC50 | 1.5 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| (3R)-1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]pyrrolidin-3-ol | IC50 | 1.6 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-(1-adamantyl)-N-(5-piperazin-1-yl-2-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.6 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 8-cyclopentyl-N-[5-(1,4-diazepan-1-yl)-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.6 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| N-[6-(4-aminopiperidin-1-yl)pyridazin-3-yl]-8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.6 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| 7-[5-fluoro-2-[[(3S,4R)-3-hydroxyoxan-4-yl]amino]pyrimidin-4-yl]-2-[[(3R)-3-hydroxypiperidin-1-yl]methyl]-3-methyl-1-propan-2-ylquinolin-4-one | IC50 | 1.6 nM | US-20250136586: Substituted 7-(Pyrimidin-4-yl)Quinolin-4(1H)-One Compounds as Cyclin Dependent Kinase Inhibitors |
| 7-[5-fluoro-2-[[(3S,4R)-3-hydroxyoxan-4-yl]amino]pyrimidin-4-yl]-3-methyl-1-propan-2-yl-2-pyrrolidin-2-ylquinolin-4-one | IC50 | 1.6 nM | US-20250136586: Substituted 7-(Pyrimidin-4-yl)Quinolin-4(1H)-One Compounds as Cyclin Dependent Kinase Inhibitors |
| 8-cyclopentyl-N-[5-[(3R)-3-methylpiperazin-1-yl]-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amine | IC50 | 1.7 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
| (2R)-1-[[1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]piperidin-4-yl]amino]propan-2-ol | IC50 | 1.7 nM | US-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors |
ChEMBL bioactivities
4187 potent at pChembl≥5 of 4533 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.59 | IC50 | 0.026 | nM | CHEMBL151546 |
| 10.33 | Ki | 0.047 | nM | CHEMBL5272948 |
| 10.15 | IC50 | 0.07 | nM | CHEMBL5841163 |
| 10.10 | IC50 | 0.08 | nM | CHEMBL148580 |
| 10.10 | IC50 | 0.08 | nM | CHEMBL6064669 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL5198209 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5266837 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5795283 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5799855 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5805872 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5876670 |
| 10.00 | Ki | 0.1 | nM | CHEMBL6001085 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5882519 |
| 10.00 | Ki | 0.1 | nM | CHEMBL6001033 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5749795 |
| 10.00 | Ki | 0.1 | nM | CHEMBL6052225 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5907078 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5783305 |
| 10.00 | Ki | 0.1 | nM | CHEMBL6026426 |
| 10.00 | Ki | 0.1 | nM | CHEMBL5786491 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL5765852 |
| 9.96 | IC50 | 0.11 | nM | CHEMBL5941236 |
| 9.96 | IC50 | 0.11 | nM | CHEMBL6043427 |
| 9.92 | IC50 | 0.12 | nM | CHEMBL5748748 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL3698644 |
| 9.89 | Ki | 0.13 | nM | EBVACICLIB |
| 9.85 | IC50 | 0.14 | nM | CHEMBL4208172 |
| 9.80 | Ki | 0.16 | nM | CHEMBL4750658 |
| 9.80 | Ki | 0.16 | nM | CHEMBL5746772 |
| 9.80 | Ki | 0.16 | nM | CHEMBL5281860 |
| 9.80 | IC50 | 0.16 | nM | CHEMBL5981421 |
| 9.77 | IC50 | 0.17 | nM | CHEMBL6064669 |
| 9.74 | IC50 | 0.18 | nM | CHEMBL5786556 |
| 9.72 | Ki | 0.19 | nM | CHEMBL5281860 |
| 9.71 | Ki | 0.196 | nM | CHEMBL5278015 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL4453997 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5280928 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5921011 |
| 9.70 | Ki | 0.2 | nM | CHEMBL6041338 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5982367 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5982735 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5851399 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5960728 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5782517 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5962008 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5801501 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5921680 |
| 9.70 | Ki | 0.2 | nM | CHEMBL6001026 |
| 9.70 | Ki | 0.2 | nM | CHEMBL5813123 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL5751717 |
PubChem BioAssay actives
2877 with measured affinity, of 5471 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 8-cyclopentyl-6-methyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | <0.0001 | uM |
| [3-(5-chlorothiophen-3-yl)-4-oxo-1H-indeno[2,1-d]pyrazol-5-yl]urea | 1607703: Inhibition of CDK4 (unknown origin) | ic50 | <0.0001 | uM |
| 1-morpholin-4-yl-3-[4-oxo-3-[5-(piperazine-1-carbonyl)thiophen-2-yl]-2H-indeno[1,2-c]pyrazol-5-yl]urea | 1607703: Inhibition of CDK4 (unknown origin) | ic50 | <0.0001 | uM |
| 6-(difluoromethyl)-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1924112: Inhibition of CDK4 (unknown origin) assessed as inhibition constant | ki | 0.0001 | uM |
| 2-(2-ethylphenyl)-5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2,3-dihydrochromen-4-one | 1868057: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0001 | uM |
| 8-cyclopentyl-6-(cyclopropyloxymethyl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0001 | uM |
| 2-(4-carbamimidoylpiperazin-1-yl)-N-[3-(4-methoxyphenyl)-4-oxo-1H-indeno[2,1-d]pyrazol-5-yl]acetamide | 1607703: Inhibition of CDK4 (unknown origin) | ic50 | 0.0001 | uM |
| 6-(2,2-difluoroethyl)-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0002 | uM |
| 6-(2,2-difluoroethyl)-8-[(1S,2S)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1685179: Inhibition of non-phosphorylated CDK4/Cyclin D3 (unknown origin) assessed as reduction in production of ADP using 5-FAM-RRRFRPASPLRGPPK peptide as substrate preincubated with enzyme for 12 mins and measured after 35 mins in presence of ATP by fluorescence-based microfluidic mobility shift assay | ki | 0.0002 | uM |
| 8-cyclopentyl-6-(2-methoxyethyl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0002 | uM |
| 3-(4-methoxyphenyl)-4-oxo-1H-indeno[2,1-d]pyrazole-5-carbaldehyde | 1607703: Inhibition of CDK4 (unknown origin) | ic50 | 0.0002 | uM |
| 8-cyclopentyl-6-(ethoxymethyl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0002 | uM |
| 6-acetyl-8-cyclopentyl-5-methyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0002 | uM |
| N-(3-nitrophenyl)-4-pyrazolo[1,5-b]pyridazin-3-ylpyrimidin-2-amine | 348894: Inhibition of CDK4 by radioactive glutathione plate-binding assay | ic50 | 0.0003 | uM |
| 5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)-N-(5-piperazin-1-yl-2-pyridinyl)pyrimidin-2-amine | 2107973: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0003 | uM |
| 6-chloro-8-cyclopentyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0003 | uM |
| 2-[8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]-7-oxopyrido[2,3-d]pyrimidin-6-yl]acetonitrile | 1685179: Inhibition of non-phosphorylated CDK4/Cyclin D3 (unknown origin) assessed as reduction in production of ADP using 5-FAM-RRRFRPASPLRGPPK peptide as substrate preincubated with enzyme for 12 mins and measured after 35 mins in presence of ATP by fluorescence-based microfluidic mobility shift assay | ki | 0.0003 | uM |
| N-[5-(6-ethyl-2,6-diazaspiro[3.3]heptan-2-yl)-2-pyridinyl]-5-fluoro-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine | 1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assay | ki | 0.0003 | uM |
| 5-fluoro-N-[5-(4-methylpiperazin-1-yl)-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine | 1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assay | ki | 0.0003 | uM |
| 5-fluoro-N-[5-[6-(3-fluoropropyl)-2,6-diazaspiro[3.3]heptan-2-yl]-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine | 1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assay | ki | 0.0003 | uM |
| 5-fluoro-N-[5-[6-(2-fluoroethyl)-2,6-diazaspiro[3.3]heptan-2-yl]-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine | 1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assay | ki | 0.0003 | uM |
| 5-fluoro-N-[5-(6-methyl-2,6-diazaspiro[3.3]heptan-2-yl)-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine | 1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assay | ki | 0.0003 | uM |
| N-[5-(2,5-diazabicyclo[2.2.1]heptan-2-yl)-2-pyridinyl]-5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-amine | 2107973: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0003 | uM |
| 5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)-N-(5-piperidin-4-yl-2-pyridinyl)pyrimidin-2-amine | 2107973: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0004 | uM |
| 6-chloro-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0004 | uM |
| 5-fluoro-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]-N-(5-morpholin-4-yl-2-pyridinyl)pyrimidin-2-amine | 1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assay | ki | 0.0004 | uM |
| 5-fluoro-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]-N-[5-[6-(oxetan-3-yl)-2,6-diazaspiro[3.3]heptan-2-yl]-2-pyridinyl]pyrimidin-2-amine | 1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assay | ki | 0.0004 | uM |
| 2-[8-cyclopentyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]-7-oxopyrido[2,3-d]pyrimidin-6-yl]acetonitrile | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0005 | uM |
| 8-cyclohexyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0005 | uM |
| 8-cyclopentyl-6-(2-hydroxyethyl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0005 | uM |
| Abemaciclib | 2198994: Inhibition of human CDK4/cyclin D1 preincubated with compound for 20 mins followed by [33P]ATP addition and measured after 2 hrs by filter binding method | ic50 | 0.0005 | uM |
| [4-[6-[[5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-yl]amino]-3-pyridinyl]piperazin-2-yl]methanol | 2107973: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0006 | uM |
| 5-fluoro-4-(5-fluoro-1,1-dimethyl-2,3-dihydropyrrolo[1,2-a]benzimidazol-7-yl)-N-[5-(piperazin-1-ylmethyl)-2-pyridinyl]pyrimidin-2-amine | 1374354: Inhibition of CDK4 (unknown origin) after 90 mins by ADP-Glo assay | ic50 | 0.0006 | uM |
| 5-fluoro-4-(5-fluoro-1-methyl-2,3-dihydro-1H-pyrrolo[1,2-a]benzimidazol-7-yl)-N-[5-[(4-propan-2-ylpiperazin-1-yl)methyl]-2-pyridinyl]pyrimidin-2-amine | 1374354: Inhibition of CDK4 (unknown origin) after 90 mins by ADP-Glo assay | ic50 | 0.0006 | uM |
| 8-cycloheptyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0006 | uM |
| N-[5-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-pyridinyl]-5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-amine | 2107973: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0006 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148049: Binding affinity to human CDK4 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0006 | uM |
| 2-(4-chlorophenyl)-5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2,3-dihydrochromen-4-one | 1868057: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0006 | uM |
| 2-(2-bromophenyl)-5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2,3-dihydrochromen-4-one | 1868057: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0006 | uM |
| [4-amino-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrimidin-5-yl]-(2,3-difluoro-6-methoxyphenyl)methanone | 624780: Binding constant for CDK4-cyclinD1 kinase domain | kd | 0.0006 | uM |
| 6-[2-(dimethylamino)ethyl]-N-[5-fluoro-4-(7-fluoro-2-methyl-3-propan-2-ylbenzimidazol-5-yl)pyrimidin-2-yl]-7,8-dihydro-5H-1,6-naphthyridin-2-amine | 1509614: Inhibition of recombinant human full length N-terminal GST-tagged CDK4 (1 to 303 residues)/cyclin D3 (1 to 292 residues) expressed in baculovirus expression system using eIF4E-binding protein 1 peptide and ATP as substrate incubated for 30 mins by LANCE ultra kinase assay | ic50 | 0.0007 | uM |
| 8-cyclopentyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0007 | uM |
| 8-cyclopentyl-2-[4-[2-(diethylamino)ethoxy]anilino]pyrido[2,3-d]pyrimidin-7-one | 1795862: CDKs Assay from Article 10.1021/jm000271k: “Pyrido[2,3-d]pyrimidin-7-one inhibitors of cyclin-dependent kinases.” | ic50 | 0.0007 | uM |
| N-[5-[(4-ethylpiperazin-1-yl)methyl]-2-pyridinyl]-5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-amine | 2107973: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0008 | uM |
| 5-fluoro-4-(5-fluoro-1,1-dimethyl-2,3-dihydropyrrolo[1,2-a]benzimidazol-7-yl)-N-[5-[(4-methylpiperazin-1-yl)methyl]-2-pyridinyl]pyrimidin-2-amine | 1374354: Inhibition of CDK4 (unknown origin) after 90 mins by ADP-Glo assay | ic50 | 0.0008 | uM |
| 8-[(1R,2S)-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one | 1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assay | ki | 0.0008 | uM |
| 5-fluoro-N-[5-(1-methylpiperidin-4-yl)-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine | 1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assay | ki | 0.0008 | uM |
| 1-[8-methyl-12-(4-piperazin-1-ylanilino)-4-propan-2-yl-2,5,11,13-tetrazatricyclo[7.4.0.02,6]trideca-1(13),3,5,7,9,11-hexaen-7-yl]ethanone | 1737183: Inhibition of recombinant human full-length N-terminal GST-fused CDK4 (1 to 303 residues)/GST-tagged CyclinD3 (1 to 292 residues) expressed in baculovirus expression system using ULight-elF4E-binding protein 1 peptide as substrate measured after 30 mins by LANCE assay | ic50 | 0.0008 | uM |
| 5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2-pyridin-4-yl-2,3-dihydrochromen-4-one | 1868057: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0008 | uM |
| 5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2-(3-methylphenyl)-2,3-dihydrochromen-4-one | 1868057: Inhibition of CDK4/Cyclin D1 (unknown origin) | ic50 | 0.0008 | uM |
CTD chemical–gene interactions
294 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| palbociclib | decreases reaction, increases phosphorylation, increases reaction, decreases activity, increases expression (+3 more) | 8 |
| Resveratrol | decreases reaction, increases activity, increases expression, affects binding, decreases activity (+5 more) | 8 |
| sodium arsenite | affects cotreatment, affects binding, decreases activity, decreases expression, decreases reaction (+2 more) | 6 |
| (+)-JQ1 compound | decreases reaction, increases expression, decreases expression, increases reaction | 5 |
| Benzo(a)pyrene | affects methylation, increases expression, increases methylation, increases reaction, affects reaction | 5 |
| Estradiol | affects binding, decreases reaction, increases activity, decreases phosphorylation, increases expression (+1 more) | 5 |
| abemaciclib | affects binding, decreases reaction, decreases activity | 4 |
| bisphenol A | increases expression, decreases reaction, affects cotreatment | 4 |
| methylselenic acid | increases reaction, decreases activity, decreases expression, affects binding | 4 |
| Arsenic Trioxide | decreases reaction, increases expression | 4 |
| Cisplatin | affects binding, decreases activity, decreases expression, decreases reaction, increases expression (+2 more) | 4 |
| Nanotubes, Carbon | decreases expression, affects cotreatment, increases expression | 4 |
| tanespimycin | decreases expression | 3 |
| Arsenic | affects methylation, increases expression, affects cotreatment, decreases expression | 3 |
| Cannabidiol | decreases expression, affects cotreatment | 3 |
| Curcumin | decreases expression | 3 |
| Quercetin | decreases expression, decreases reaction, increases activity, increases expression | 3 |
| Tetrachlorodibenzodioxin | increases phosphorylation, increases activity, increases reaction, decreases reaction, increases expression (+2 more) | 3 |
| Cadmium Chloride | decreases expression, increases expression | 3 |
| ribociclib | decreases activity, affects binding, decreases reaction | 2 |
| picrasidine I | increases expression, decreases expression | 2 |
| tubocapsenolide A | decreases reaction, increases degradation, decreases expression | 2 |
| geraniol | decreases expression | 2 |
| beta-ionone | decreases expression | 2 |
| trichostatin A | decreases expression | 2 |
| indole-3-carbinol | decreases activity, increases expression, decreases expression | 2 |
| 2-oxindole | affects binding, decreases activity | 2 |
| perfluorooctanoic acid | increases expression | 2 |
| perfluorooctane sulfonic acid | increases expression | 2 |
| alvocidib | affects binding, decreases activity | 2 |
ChEMBL screening assays
1142 unique, capped per target: 1086 binding, 53 functional, 2 admet, 1 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1016197 | Binding | Inhibition of CDK4/Cyclin D1 assessed as inhibition of retinoblastoma susceptibility gene product phosphorylation | Discovery of 4-(benzylaminomethylene)isoquinoline-1,3-(2H,4H)-diones and 4-[(pyridylmethyl)aminomethylene]isoquinoline-1,3-(2H,4H)-diones as potent and selective inhibitors of the cyclin-dependent kinase 4. — J Med Chem |
| CHEMBL666092 | Functional | Inhibition of Rb21 phosphorylation by Cyclin D1-cyclin-dependent kinase 4 | Novel, potent and selective cyclin D1/CDK4 inhibitors: indolo[6,7-a]pyrrolo[3,4-c]carbazoles. — Bioorg Med Chem Lett |
| CHEMBL4325186 | ADMET | Inhibition of human CDK4/Cyclin D3 at 1 uM relative to control | Selectivity and Physicochemical Optimization of Repurposed Pyrazolo[1,5-b]pyridazines for the Treatment of Human African Trypanosomiasis. — J Med Chem |
Cellosaurus cell lines
131 cell lines: 69 telomerase immortalized cell line, 56 cancer cell line, 6 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0526 | SK-MEL-28 | Cancer cell line | Male |
| CVCL_0B76 | WM3630 | Cancer cell line | Sex unspecified |
| CVCL_0B78 | WM3704 | Cancer cell line | Sex unspecified |
| CVCL_1135 | COLO 800 | Cancer cell line | Male |
| CVCL_2240 | WM39 | Cancer cell line | Male |
| CVCL_3878 | SK-MEL-37 | Cancer cell line | Male |
| CVCL_5239 | 1205Lu | Cancer cell line | Male |
| CVCL_6031 | SK-MEL-29 | Cancer cell line | Male |
| CVCL_6036 | SK-MEL-39 | Cancer cell line | Male |
| CVCL_6793 | WM1791C | Cancer cell line | Male |
Clinical trials (associated diseases)
590 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00280709 | PHASE4 | COMPLETED | Biliary Metal Stent Study: Metal Stents for Management of Distal Malignant Biliary Obstruction |
| NCT00365508 | PHASE4 | COMPLETED | Counseling and Nicotine Replacement Therapy in Helping Adult Smokers Quit Smoking |
| NCT00558155 | PHASE4 | COMPLETED | The Impact of Immunostimulating Nutrition on the Outcome of Surgery |
| NCT00576940 | PHASE4 | COMPLETED | Standard and Immunostimulating Enteral Nutrition in Surgical Patients |
| NCT00578279 | PHASE4 | COMPLETED | Endoscopic Ultrasound-guided Celiac Plexus Neurolysis (EUS-CPN)With Alcohol in Unresectable Pancreatic Cancer: a Pilot Study |
| NCT00583479 | PHASE4 | COMPLETED | Prospective Study of Celiac Block Injection: 1 vs. 2 |
| NCT00642733 | PHASE4 | TERMINATED | A Study of First Line Treatment With Tarceva (Erlotinib) in Combination With Gemcitabine in Patients With Locally Advanced Unresectable or Metastatic Pancreatic Cancer |
| NCT00666978 | PHASE4 | COMPLETED | Health Education Counseling With or Without Bupropion in Helping African Americans Stop Smoking |
| NCT00920023 | PHASE4 | COMPLETED | Pre-Operative Staging of Pancreatic Cancer Using Superparamagnetic Iron Oxide Magnetic Resonance Imaging (SPIO MRI) |
| NCT00966277 | PHASE4 | COMPLETED | Dalteparin for Primary Venous Thromboembolism (VTE) Prophylaxis in Pancreatic Cancer Patients |
| NCT01041612 | PHASE4 | COMPLETED | Comparing Covered Self-expandable Metallic Stent (SEMS) Above/Across the Sphincter of Oddi |
| NCT01111591 | PHASE4 | UNKNOWN | Cyclooxygenase-2 Inhibitor for Adjuvant Anticancer Effect in Patients With Biliary-pancreas Cancer |
| NCT01256034 | PHASE4 | COMPLETED | Effects of Preoperative Immunonutrition in Patients Undergoing Pancreaticoduodenectomy |
| NCT01642875 | PHASE4 | UNKNOWN | Early Oral Versus Enteral Nutrition After Pancreatoduodenectomy |
| NCT01768988 | PHASE4 | TERMINATED | Efficacy Of Pregabalin In The Treatment Of Pancreatic Cancer Pain. A Randomized Controlled Double-Blind, Parallel Group Study |
| NCT02027311 | PHASE4 | COMPLETED | Etomidate vs. Midazolam for Sedation During ERCP |
| NCT02044224 | PHASE4 | COMPLETED | Effects of Dexmedetomidine During IRE Procedures for Solid Tumours |
| NCT03642093 | PHASE4 | UNKNOWN | HOPE - A Study to Evaluate the Effect of a Prehabilitation Program on GI Cancer Patients Planning to Undergo Surgery |
| NCT03891979 | PHASE4 | WITHDRAWN | Gut Microbiome Modulation to Enable Efficacy of Checkpoint-based Immunotherapy in Pancreatic Adenocarcinoma |
| NCT04025840 | PHASE4 | ACTIVE_NOT_RECRUITING | Perioperative Epidural Block and Dexamethasone in Pancreatic Cancer Surgery |
| NCT04058236 | PHASE4 | UNKNOWN | Glycocalyx Levels in Patients Undergoing Pancreatectomy |
| NCT04155008 | PHASE4 | TERMINATED | Nutrition and Pharmacological Algorithm for Oncology Patients Study |
| NCT04217096 | PHASE4 | UNKNOWN | Efficacy and Safety of Paclitaxel Liposome and S-1 as First-line Therapy in \ Advanced Pancreatic Cancer Patients |
| NCT04269369 | PHASE4 | UNKNOWN | Implementation of Pre-emptive Geno- and Phenotyping in 5-Fluorouracil- or Capecitabine-treated Patients |
| NCT04809935 | PHASE4 | UNKNOWN | EUS-Coeliac Plexus Block Versus Radiofrequency Ablation in Pain Relief of Patients With Malignancy |
| NCT05035147 | PHASE4 | RECRUITING | Albumin-bound Paclitaxel Combined With Gemcitabine First-line Inoperable Pancreatic Cancer |
| NCT05245877 | PHASE4 | RECRUITING | Pre- Vs. Postoperative Thromboprophylaxis in Pancreatic Surgery |
| NCT05784311 | PHASE4 | RECRUITING | Standard Versus Prolonged Antibiotic Prophylaxis After Pancreatoduodenectomy (SPARROW) |
| NCT06316908 | PHASE4 | COMPLETED | Permanent Celiac Plexus Block: Comparison of Pain Score in Unilateral and Bilateral Posterior Percutaneous Approach |
| NCT06779318 | PHASE4 | NOT_YET_RECRUITING | Maintenance Chemotherapy With S-1 vs. Observation After Adjuvant Therapy for Resected Pancreatic Cancer With High Risk of Recurrence/Metastasis |
| NCT07557394 | PHASE4 | NOT_YET_RECRUITING | A Prospective Non-randomized Controlled Interventional Study on the Effect of Shouhui Tongbian Capsules Combined With Pancreatin Enteric-coated Capsules on Pancreatic Exocrine Function in Patients After Curative Resection for Pancreatic Cancer |
| NCT01038154 | PHASE4 | UNKNOWN | Study to Evaluate the Efficacy of Pravastatin on Survival and Recurrence of Advanced Gastroesophageal Cancer |
| NCT01234272 | PHASE4 | COMPLETED | Comparison of the Analgesic Effect Between Intrathecal Morphine and IV-fentanyl Patient Controlled Analgesia (ITM-IVPCA) and Epidural PCA (PCEA) in Patients Undergoing Gastrectomy -Randomized Allocation Study- |
| NCT01260194 | PHASE4 | TERMINATED | A Study of Herceptin (Trastuzumab) in Combination With Standard Chemotherapy in Patients With HER Positive Metastatic Gastric Cancer |
| NCT01271582 | PHASE4 | UNKNOWN | Investigation of Association Between UGT1A1 Polymorphisms and Irinotecan Toxicity in Korean Patients |
| NCT01401075 | PHASE4 | COMPLETED | RCT With Adjuvant Mistletoe Treatment in Gastric Cancer Patients |
| NCT01471756 | PHASE4 | COMPLETED | Improving Complete Endoscopic Mucosal Resection (EMR) of Colorectal Neoplasia |
| NCT01766765 | PHASE4 | UNKNOWN | Early Jejunostomy Nutrition Minimizes Time to Chemotherapy |
| NCT01910948 | PHASE4 | UNKNOWN | Perioperative Application of Omega-3 Polyunsaturated Fatty Acids in Gastric Cancer Patients |
| NCT01927328 | PHASE4 | UNKNOWN | Iron Replacement in Oesophagogastric Neoplasia |
Related Atlas pages
- Associated diseases: melanoma, cutaneous malignant, susceptibility to, 3, malignant pancreatic neoplasm, pediatric liposarcoma, estrogen-receptor positive breast cancer, sarcoma, cutaneous melanoma
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Palbociclib, Alpelisib
- Targeted by drugs: Abemaciclib, Alvocidib, Dalpiciclib, Lerociclib, Palbociclib, Ribociclib, Trilaciclib
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): adult liposarcoma, cutaneous melanoma, diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype, estrogen-receptor positive breast cancer, familial melanoma, gastric cancer, hereditary neoplastic syndrome, immune system disorder, liposarcoma, malignant pancreatic neoplasm, melanoma, cutaneous malignant, susceptibility to, 3, microcephaly 31, primary, autosomal recessive, pediatric liposarcoma, sarcoma