CDK4

gene
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Also known as PSK-J3

Summary

CDK4 (cyclin dependent kinase 4, HGNC:1773) is a protein-coding gene on chromosome 12q14.1, encoding Cyclin-dependent kinase 4 (P11802). Ser/Thr-kinase component of cyclin D-CDK4 (DC) complexes that phosphorylate and inhibit members of the retinoblastoma (RB) protein family including RB1 and regulate the cell-cycle during G(1)/S transition. In precision oncology, CDK4 Amplification confers sensitivity to Palbociclib in Liposarcoma (CIViC Level B); 4 further curated variant–drug associations are listed below. It is a selective cancer dependency (DepMap: 58.0% of cell lines).

The protein encoded by this gene is a member of the Ser/Thr protein kinase family. This protein is highly similar to the gene products of S. cerevisiae cdc28 and S. pombe cdc2. It is a catalytic subunit of the protein kinase complex that is important for cell cycle G1 phase progression. The activity of this kinase is restricted to the G1-S phase, which is controlled by the regulatory subunits D-type cyclins and CDK inhibitor p16(INK4a). This kinase was shown to be responsible for the phosphorylation of retinoblastoma gene product (Rb). Mutations in this gene as well as in its related proteins including D-type cyclins, p16(INK4a) and Rb were all found to be associated with tumorigenesis of a variety of cancers. Multiple polyadenylation sites of this gene have been reported.

Source: NCBI Gene 1019 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): melanoma, cutaneous malignant, susceptibility to, 3 (Definitive, ClinGen) — +1 more curated relationship
  • GWAS associations: 6
  • Clinical variants (ClinVar): 1,127 total — 3 pathogenic
  • Phenotypes (HPO): 19
  • Druggable target: yes — 56 molecules with ChEMBL bioactivity
  • Precision-oncology evidence (CIViC): 5 curated variant–drug associations
  • Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 1 cancer types
  • Cancer dependency (DepMap): dependent in 58.0% of screened cell lines
  • Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
  • MANE Select transcript: NM_000075

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:1773
Approved symbolCDK4
Namecyclin dependent kinase 4
Location12q14.1
Locus typegene with protein product
StatusApproved
AliasesPSK-J3
Ensembl geneENSG00000135446
Ensembl biotypeprotein_coding
OMIM123829
Entrez1019

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 13 protein_coding, 2 nonsense_mediated_decay, 2 retained_intron, 1 protein_coding_CDS_not_defined

ENST00000257904, ENST00000546489, ENST00000547281, ENST00000547853, ENST00000549606, ENST00000550419, ENST00000551706, ENST00000551800, ENST00000551888, ENST00000552254, ENST00000552388, ENST00000552713, ENST00000552862, ENST00000553237, ENST00000918532, ENST00000918533, ENST00000918534, ENST00000918535

RefSeq mRNA: 1 — MANE Select: NM_000075 NM_000075

CCDS: CCDS8953

Canonical transcript exons

ENST00000257904 — 8 exons

ExonStartEnd
ENSE000011410695774772757748617
ENSE000023745225775217557752310
ENSE000034589395774918257749317
ENSE000034659265775065657750765
ENSE000034860995775120757751342
ENSE000034979905775092357751090
ENSE000035935655775150057751736
ENSE000036761505774945457749504

Expression profiles

Bgee: expression breadth ubiquitous, 138 present calls, max score 98.33.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 112.2027 / max 4011.7860, expressed in 1819 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter IDTPM avgSamples expressed
13175392.43561818
13175418.72301782
1317500.6972324
1317510.211184
1317520.135833

Top tissues by expression

138 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
embryoUBERON:000092298.33gold quality
ganglionic eminenceUBERON:000402398.33gold quality
ventricular zoneUBERON:000305398.30gold quality
stromal cell of endometriumCL:000225597.91gold quality
right adrenal glandUBERON:000123397.21gold quality
ovaryUBERON:000099297.13gold quality
right ovaryUBERON:000211897.13gold quality
smooth muscle tissueUBERON:000113597.11gold quality
right adrenal gland cortexUBERON:003582797.06gold quality
left ovaryUBERON:000211997.05gold quality
left adrenal glandUBERON:000123496.92gold quality
left adrenal gland cortexUBERON:003582596.76gold quality
left uterine tubeUBERON:000130396.75gold quality
endocervixUBERON:000045896.70gold quality
adrenal glandUBERON:000236996.70gold quality
ectocervixUBERON:001224996.70gold quality
body of uterusUBERON:000985396.66gold quality
myometriumUBERON:000129696.43gold quality
adenohypophysisUBERON:000219696.38gold quality
fallopian tubeUBERON:000388996.35gold quality
pancreasUBERON:000126496.34gold quality
islet of LangerhansUBERON:000000696.31gold quality
gall bladderUBERON:000211096.31gold quality
body of pancreasUBERON:000115096.29gold quality
pituitary glandUBERON:000000796.16gold quality
vermiform appendixUBERON:000115496.06gold quality
adrenal tissueUBERON:001830396.03gold quality
right coronary arteryUBERON:000162595.95gold quality
lymph nodeUBERON:000002995.92gold quality
uterine cervixUBERON:000000295.91gold quality

Single-cell (SCXA)

Detected in 11 experiment(s), a significant marker in 9.

ExperimentMarker?Max mean expression
E-GEOD-84465yes2197.80
E-HCAD-4yes143.81
E-CURD-114yes61.29
E-HCAD-5yes42.44
E-MTAB-9067yes23.71
E-GEOD-125970yes22.02
E-CURD-122yes19.99
E-CURD-112yes9.12
E-MTAB-7303no352.50
E-MTAB-6524no319.61
E-ANND-3no0.00

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): ATF2, CEBPA, E2F1, ESR1, ETS1, EZH2, FOS, GATA4, HDAC1, HR, IRF1, IRF3, JARID2, JUND, KLF4, KSR1, LRRC4, MAFA, MYC, NEUROG3, NFATC2, NFKB1, NFKB, NFKBID, NR3C1, PARP1, PAX3, PDGFB, POU4F2, PPARG, RELA, RUNX1, SATB1, SIN3B, SOX6, SOX9, SP1, STAT3, TFDP1, TGFB1

miRNA regulators (miRDB)

45 targeting CDK4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4747-5P100.0067.902681
HSA-MIR-5196-5P100.0067.982761
HSA-MIR-4668-3P100.0068.742635
HSA-MIR-150-5P99.9966.691976
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-56899.9869.862084
HSA-MIR-548AN99.9770.912817
HSA-MIR-391099.9571.132227
HSA-MIR-124-3P99.8973.743043
HSA-MIR-506-3P99.8973.553057
HSA-MIR-7845-5P99.8864.88771
HSA-MIR-4728-5P99.8569.394718
HSA-MIR-684499.8270.692423
HSA-MIR-6875-3P99.8270.262983
HSA-MIR-6785-5P99.8268.684428
HSA-MIR-442899.7366.411733
HSA-MIR-149-3P99.7268.223963
HSA-MIR-371499.7170.742671
HSA-MIR-494-3P99.7071.452795
HSA-MIR-6883-5P99.6968.053785
HSA-MIR-4756-3P99.6266.301319
HSA-MIR-451699.6167.783390
HSA-MIR-7152-5P99.6069.332094
HSA-MIR-6832-5P99.5864.821132
HSA-MIR-6716-5P99.5668.621244
HSA-MIR-486-5P99.5170.39707
HSA-MIR-584-3P99.3567.691082
HSA-MIR-751599.3168.221795
HSA-MIR-504-3P99.3067.181745
HSA-MIR-426399.1869.252236

Functional genomics

ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map DepMap (CRISPR cell-line fitness): dependent in 58.0% of screened cell lines.

Literature-anchored findings (GeneRIF, showing 40)

  • Rarity of CDK4 germline mutations in familial melanoma. (PMID:11828258)
  • Reversal of growth suppression by p107 via direct phosphorylation by cyclin D1/cyclin-dependent kinase 4 (PMID:11884610)
  • Results show that Tax directly interacts with CDK4. The Tax/CDK complex represents an active holoenzyme which capably phosphorylates the Rb protein in vitro and is resistant to repression by the inhibitor p21(CIP). (PMID:11971966)
  • ultraviolet-B-induced cell cycle arrest in A431 cells is mediated by cyclin-dependent kinase 4 downregulation (PMID:11982759)
  • Keratinocytes engineered to express cdk4(R24C) and hTERT but not p53DD did not exhibit an extended life span. (PMID:12077343)
  • Sequential extension of proliferative lifespan in human fibroblasts is induced by over-expression of CDK4 or 6 and loss of p53 function. (PMID:12082615)
  • data identify a new role for oncogenic Ras in CDK4 regulation and highlight the functional importance of CDK4 suppression in preventing uncontrolled growth (PMID:12357246)
  • Cdk4 binds to p16INK4A and causes its phosphorylation (PMID:12529334)
  • Interferon gamma reduces the activity of Cdk4 and Cdk2, inhibiting he G1 cell cycle in human hepatocellular carcinoma cells. (PMID:12531694)
  • Cdk4-overexpressing cells divide in an apparently normal regulated fashion, are able to respond to changes in calcium levels, and fully differentiate . These results suggest that the differentiation pathways in Cdk4-overexpressing cells remain intact (PMID:12545164)
  • Data provide evidence of a role for MDM2 and CDK4 in the pathogenesis of carcinosarcoma. (PMID:12565795)
  • increases of cyclin D1, cyclin-dependent kinase 4, cyclin E, cyclin A, and Wee1 play an important role in the development of hepatocellular carcinoma from cirrhosis (PMID:12601350)
  • Cells overexpressing cdk4 or cyclin D1 exhibited nuclear features characteristic of apoptosis. (PMID:12680219)
  • DNA mutation analysis of the CDK4 gene in many types of neoplasms reveal it is very rare. Random mutagenisis the CDK4 gene showed that most of the mutations that disrupted interactions with p16(INK4) also knocked out the activity of CDK4. (PMID:12731669)
  • significant difference in their biochemical properties between CDK4/cyclin D1 and CDK2/cyclin A affecting regulation of cellular RB function (PMID:14646596)
  • susceptibility to skin tumor formation by forced expression of CDK4 (PMID:14647432)
  • Data suggest that cyclin dependent kinase 4 is involved in the development of tobacco-mediated oral carcinogenesis, and that c-myc expression is absent in normal and high in later stages of oral cancer development. (PMID:14672406)
  • cyclin-dependent kinase (CDK)2, -4, and -6 were down-regulated from the myelocytes/metamyelocytes stages and onward (PMID:14694185)
  • CDK4 binding to cyclin D1 is stimulated by Cdc37 (PMID:14701845)
  • cyclin D1/Cdk4 complexes are regulated by calcium/calmodulin-dependent protein kinase I (PMID:14754892)
  • Cdk2 and Cdk4 phosphorylate human Cdt1 and induce its degradation (PMID:15004027)
  • CDK4, MDM2, SAS and GLI genes are amplified in leiomyosarcoma, alveolar and embryonal rhabdomyosarcoma (PMID:15024701)
  • A novel Cdk4 docking motif has been defined within a stretch of 19 amino acids from the C-terminal domain of the Rb protein that are essential for Cdk4 binding. (PMID:15169919)
  • Transcriptional regulation of the CDK4 promotor is compared in normal breast cell lines vs breast cancer cell lines. (PMID:15208653)
  • When expressed in transgenic mice, total CDK4 protein expression was increased by up to 5-fold, with a concomitant increase in CDK4 activity. (PMID:15480536)
  • Expression levels of CDK4 predict the cellular effects ofmTOIR inhibitors in ovarian carcinoma. (PMID:15505422)
  • This suggests that dysregulation of CCND2 and CDK4 plays a specific role in WT tumorigenesis. (PMID:15797629)
  • CDK4 melanoma families known to date have a substitution of amino acid 24. (PMID:15880589)
  • Breast cancer patients might benefit from inhibiting CDK4 kinase. (PMID:16413469)
  • there is a novel function for CDK4-cyclin D3 activity in S and G(2) phase that is critical for G(2)/M progression and the fidelity of mitosis (PMID:16476733)
  • the subtype 2 receptor-mediated antiproliferative effect of SRIH on TT cell proliferation may be exerted through a decrease in cyclin D1 and cdk4 levels (PMID:16601140)
  • Mantle cell lymphoma should be very sensitive to targeted therapy aimed at functional inhibition of the cyclin D1/CDK4 complex. (PMID:16690963)
  • There were no significant changes of CDK4 and E2F-1/4 expression in benzo(a)pyrene treated embryo lung fibroblasts. (PMID:16758952)
  • cyclin D1/Cdk4 converts FOXM1c from an almost inactive form into a strong transactivator in G1-phase, i.e., just at the time point at which the transcriptional activity of FOXM1 is required for stimulation of the G1/S-transition (PMID:16913845)
  • The data shows the expression and purification of an Hsp90-Cdc37-Cdk4 complex, defining its stoichiometry, and determining its 3D structure by single-particle electron microscopy. (PMID:16949366)
  • significant cytoplasmic mislocalization of ordinarily nuclear RB in cells harboring Cdk4 mutations (PMID:17043357)
  • Overexpression of p16 and CDK4 in the cytoplasm, as well as loss expression of p16 in the nucleus might be important in the evolution of colorectal carcinoma from adenoma and, of adenoma from normal epithelia. (PMID:17072968)
  • findings confirm CDK4 overexpression is a frequent phenomenon in laryngeal carcinoma, which occurs at transcriptional level but not related to gene amplification or mutation, & suggest cooperation with CCND1 may be involved in laryngeal tumor progression (PMID:17139501)
  • Sensitization towards TRAIL was due to the transcriptional downregulation of survivin (PMID:17304504)
  • The expression level of cyclin D1 and CDK4 protein increased in human embryonic lung fibroblasts treated with quartz. (PMID:17374178)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriocdk4ENSDARG00000087937
mus_musculusCdk4ENSMUSG00000006728
rattus_norvegicusCdk4ENSRNOG00000025602

Paralogs (26): CDKL3 (ENSG00000006837), CDKL5 (ENSG00000008086), CDK11A (ENSG00000008128), CDK14 (ENSG00000058091), CDK17 (ENSG00000059758), CDK13 (ENSG00000065883), CDKL1 (ENSG00000100490), CDK16 (ENSG00000102225), CDK6 (ENSG00000105810), PRP4K (ENSG00000112739), CDK18 (ENSG00000117266), CDK2 (ENSG00000123374), CDK8 (ENSG00000132964), CDK7 (ENSG00000134058), CDK9 (ENSG00000136807), CDK15 (ENSG00000138395), CDKL2 (ENSG00000138769), CDK19 (ENSG00000155111), CDK20 (ENSG00000156345), CDK5 (ENSG00000164885), CDK12 (ENSG00000167258), CDK1 (ENSG00000170312), CDK10 (ENSG00000185324), CDKL4 (ENSG00000205111), CDK11B (ENSG00000248333), CDK3 (ENSG00000250506)

Protein

Protein identifiers

Cyclin-dependent kinase 4P11802 (reviewed: P11802)

Alternative names: Cell division protein kinase 4, PSK-J3

All UniProt accessions (10): P11802, F8VTV8, F8VWX7, F8VXD2, F8VYH9, F8VYY1, F8VZ13, F8VZ51, F8VZZ0, F8W1L8

UniProt curated annotations — full annotation on UniProt →

Function. Ser/Thr-kinase component of cyclin D-CDK4 (DC) complexes that phosphorylate and inhibit members of the retinoblastoma (RB) protein family including RB1 and regulate the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complexes and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. Also phosphorylates SMAD3 in a cell-cycle-dependent manner and represses its transcriptional activity. Component of the ternary complex, cyclin D/CDK4/CDKN1B, required for nuclear translocation and activity of the cyclin D-CDK4 complex.

Subunit / interactions. Component of the D-CDK4 complex, composed of CDK4 and some D-type G1 cyclin (CCND1, CCND2 or CCND3). Interacts directly in the complex with CCND1, CCND2 or CCND3. Interacts with SEI1 and ZNF655. Forms a ternary complex, cyclin D-CDK4-CDKN1B, involved in modulating CDK4 enzymatic activity. Interacts directly with CDKN1B (phosphorylated on ‘Tyr-88’ and ‘Tyr-89’); the interaction allows assembly of the cyclin D-CDK4 complex, Thr-172 phosphorylation, nuclear translocation and enhances the cyclin D-CDK4 complex activity. CDK4 activity is either inhibited or enhanced depending on stoichiometry of complex. The non-tyrosine-phosphorylated form of CDKN1B prevents T-loop phosphorylation of CDK4 producing inactive CDK4. Interacts (unphosphorylated form) with CDK2. Also forms ternary complexes with CDKN1A or CDKN2A. Interacts directly with CDKN1A (via its N-terminal); the interaction promotes the assembly of the cyclin D-CDK4 complex, its nuclear translocation and promotes the cyclin D-dependent enzyme activity of CDK4. Interacts with CCND1; the interaction is prevented with the binding of CCND1 to INSM1 during cell cycle progression. Probably forms a complex composed of chaperones HSP90 and HSP70, co-chaperones CDC37, PPP5C, TSC1 and client protein TSC2, CDK4, AKT, RAF1 and NR3C1; this complex does not contain co-chaperones STIP1/HOP and PTGES3/p23. Interacts with CEBPA (when phosphorylated). Interacts with FNIP1 and FNIP2.

Subcellular location. Cytoplasm. Nucleus. Nucleus membrane.

Post-translational modifications. Phosphorylation at Thr-172 is required for enzymatic activity. Phosphorylated, in vitro, at this site by CCNH-CDK7, but, in vivo, appears to be phosphorylated by a proline-directed kinase. In the cyclin D-CDK4-CDKN1B complex, this phosphorylation and consequent CDK4 enzyme activity, is dependent on the tyrosine phosphorylation state of CDKN1B. Thus, in proliferating cells, CDK4 within the complex is phosphorylated on Thr-172 in the T-loop. In resting cells, phosphorylation on Thr-172 is prevented by the non-tyrosine-phosphorylated form of CDKN1B.

Disease relevance. Melanoma, cutaneous malignant 3 (CMM3) [MIM:609048] A malignant neoplasm of melanocytes, arising de novo or from a pre-existing benign nevus, which occurs most often in the skin but may also involve other sites. Disease susceptibility is associated with variants affecting the gene represented in this entry.

Activity regulation. Both phosphorylation at Thr-172 and binding of a D-type cyclin are necessary for enzymatic activity. Full activation of the cyclin-D-CDK4 complex appears to require other factors such as recruitment of the substrate via a substrate recruitment motif, and/or formation of the CDKN1B ternary complex. Inhibited by INK4 family members. In resting cells, the non-tyrosine-phosphorylated form of CDKN1B prevents phosphorylation at Thr-172 and inactivation, while, in proliferating cells, tyrosine phosphorylation of CDKN1B allows phosphorylation of Thr-172 of CDK4 and subsequent activation.

Similarity. Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.

Isoforms (2)

UniProt IDNamesCanonical?
P11802-11yes
P11802-22

RefSeq proteins (1): NP_000066* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000719Prot_kinase_domDomain
IPR008271Ser/Thr_kinase_ASActive_site
IPR011009Kinase-like_dom_sfHomologous_superfamily
IPR017441Protein_kinase_ATP_BSBinding_site
IPR050108CDKFamily

Pfam: PF00069

Enzyme classification (BRENDA):

  • EC 2.7.11.22 — cyclin-dependent kinase (BRENDA: 49 organisms, 441 substrates, 555 inhibitors, 8 Km, 4 kcat entries)

Substrate kinetics (BRENDA)

4 substrates with measured Km, best-characterized 4. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
ADAQHATPPKKKRKVEDPKDF0.046–0.5212
ATP0.0052–0.0172
FIN10.0031
PKTPKKAKKL0.00291

Catalyzed reactions (Rhea), 2 shown:

  • L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
  • L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)

UniProt features (53 total): helix 16, strand 13, sequence variant 5, turn 5, mutagenesis site 3, binding site 2, modified residue 2, initiator methionine 1, chain 1, sequence conflict 1, domain 1, region of interest 1, active site 1, splice variant 1

Structure

Experimental structures (PDB)

15 structures.

PDBMethodResolution (Å)
9CSKX-RAY DIFFRACTION2.25
2W96X-RAY DIFFRACTION2.3
6P8EX-RAY DIFFRACTION2.3
2W9ZX-RAY DIFFRACTION2.45
7SJ3X-RAY DIFFRACTION2.51
2W99X-RAY DIFFRACTION2.8
6P8GX-RAY DIFFRACTION2.8
2W9FX-RAY DIFFRACTION2.85
6P8FX-RAY DIFFRACTION2.89
3G33X-RAY DIFFRACTION3
6P8HX-RAY DIFFRACTION3.19
5FWKELECTRON MICROSCOPY3.9
5FWPELECTRON MICROSCOPY7.2
5FWMELECTRON MICROSCOPY8
5FWLELECTRON MICROSCOPY9

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P11802-F187.560.68

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 140 (proton acceptor)

Ligand- & substrate-binding residues (2): 12–20; 35

Post-translational modifications (2): 2, 172

Mutagenesis-validated functional residues (3):

PositionPhenotype
172weak enzyme activity towards rb1, but no effect on binding of ccdn1 nor ccdn3.
172retains moderate enzyme activity.
173no effect on in vitro phosphorylation by cdk7. greatly reduced t-172 phosphorylation and enzyme activity.

Function

Pathways and Gene Ontology

Reactome pathways

50 pathways

IDPathway
R-HSA-187577SCF(Skp2)-mediated degradation of p27/p21
R-HSA-2559580Oxidative Stress Induced Senescence
R-HSA-2559582Senescence-Associated Secretory Phenotype (SASP)
R-HSA-2559585Oncogene Induced Senescence
R-HSA-3214858RMTs methylate histone arginines
R-HSA-381340Transcriptional regulation of white adipocyte differentiation
R-HSA-69231Cyclin D associated events in G1
R-HSA-75815Ubiquitin-dependent degradation of Cyclin D
R-HSA-8849470PTK6 Regulates Cell Cycle
R-HSA-8878166Transcriptional regulation by RUNX2
R-HSA-912446Meiotic recombination
R-HSA-9616222Transcriptional regulation of granulopoiesis
R-HSA-9630791Evasion of Oncogene Induced Senescence Due to Defective p16INK4A binding to CDK4
R-HSA-9630794Evasion of Oncogene Induced Senescence Due to Defective p16INK4A binding to CDK4 and CDK6
R-HSA-9632697Evasion of Oxidative Stress Induced Senescence Due to Defective p16INK4A binding to CDK4
R-HSA-9632700Evasion of Oxidative Stress Induced Senescence Due to Defective p16INK4A binding to CDK4 and CDK6
R-HSA-9661069Defective binding of RB1 mutants to E2F1,(E2F2, E2F3)
R-HSA-9754119Drug-mediated inhibition of CDK4/CDK6 activity
R-HSA-9929491SPOP-mediated proteasomal degradation of PD-L1(CD274)
R-HSA-1266738Developmental Biology
R-HSA-1474165Reproduction
R-HSA-1500620Meiosis
R-HSA-162582Signal Transduction
R-HSA-1640170Cell Cycle
R-HSA-1643685Disease
R-HSA-212436Generic Transcription Pathway
R-HSA-2262752Cellular responses to stress
R-HSA-2559583Cellular Senescence
R-HSA-3247509Chromatin modifying enzymes
R-HSA-453279Mitotic G1 phase and G1/S transition

MSigDB gene sets: 525 (showing top): GSE45365_NK_CELL_VS_CD8A_DC_UP, REACTOME_TRANSCRIPTIONAL_REGULATION_OF_WHITE_ADIPOCYTE_DIFFERENTIATION, REACTOME_MEIOTIC_RECOMBINATION, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, MODULE_451, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_INTERLEUKIN_4, GOBP_RESPONSE_TO_PEPTIDE, GOBP_CELLULAR_RESPONSE_TO_LIPID, PAL_PRMT5_TARGETS_UP, HOFMANN_CELL_LYMPHOMA_UP, REACTOME_SCF_SKP2_MEDIATED_DEGRADATION_OF_P27_P21, GOBP_CELLULAR_RESPONSE_TO_BIOTIC_STIMULUS, GOBP_POSITIVE_REGULATION_OF_FIBROBLAST_PROLIFERATION, CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN

GO Biological Process (17): G1/S transition of mitotic cell cycle (GO:0000082), signal transduction (GO:0007165), positive regulation of cell population proliferation (GO:0008284), response to xenobiotic stimulus (GO:0009410), regulation of G2/M transition of mitotic cell cycle (GO:0010389), regulation of gene expression (GO:0010468), positive regulation of G2/M transition of mitotic cell cycle (GO:0010971), positive regulation of fibroblast proliferation (GO:0048146), cell division (GO:0051301), regulation of cell cycle (GO:0051726), regulation of transcription initiation by RNA polymerase II (GO:0060260), regulation of type B pancreatic cell proliferation (GO:0061469), cellular response to lipopolysaccharide (GO:0071222), cellular response to interleukin-4 (GO:0071353), cellular response to phorbol 13-acetate 12-myristate (GO:1904628), cellular response to ionomycin (GO:1904637), protein phosphorylation (GO:0006468)

GO Molecular Function (11): cyclin-dependent protein serine/threonine kinase activity (GO:0004693), ATP binding (GO:0005524), cyclin-dependent protein serine/threonine kinase regulator activity (GO:0016538), cyclin binding (GO:0030332), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein serine/threonine kinase activity (GO:0004674), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)

GO Cellular Component (14): cyclin-dependent protein kinase holoenzyme complex (GO:0000307), chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654), transcription regulator complex (GO:0005667), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), bicellular tight junction (GO:0005923), nuclear membrane (GO:0031965), cyclin D1-CDK4 complex (GO:0097128), cyclin D2-CDK4 complex (GO:0097129), cyclin D3-CDK4 complex (GO:0097130), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-16 pathways:

CategoryPathways
Cellular Senescence3
Evasion of Oncogene Induced Senescence Due to p16INK4A Defects2
Evasion of Oxidative Stress Induced Senescence Due to p16INK4A Defects2
Cyclin E associated events during G1/S transition1
Cyclin A:Cdk2-associated events at S phase entry1
Chromatin modifying enzymes1
Adipogenesis1
G1 Phase1
S Phase1
Signaling by PTK61
Generic Transcription Pathway1
Meiosis1
Developmental Biology1
Aberrant regulation of mitotic G1/S transition in cancer due to RB1 defects1
Cyclin D associated events in G11

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure5
cyclin-dependent protein kinase holoenzyme complex3
cellular process2
regulation of cellular process2
G2/M transition of mitotic cell cycle2
cellular response to lipid2
protein kinase activity2
nuclear lumen2
mitotic cell cycle1
mitotic cell cycle phase transition1
cell cycle G1/S phase transition1
cell communication1
signaling1
cellular response to stimulus1
cell population proliferation1
regulation of cell population proliferation1
positive regulation of cellular process1
response to chemical1
regulation of mitotic cell cycle phase transition1
regulation of cell cycle G2/M phase transition1
gene expression1
regulation of macromolecule biosynthetic process1
regulation of G2/M transition of mitotic cell cycle1
positive regulation of mitotic cell cycle phase transition1
positive regulation of cell cycle G2/M phase transition1
positive regulation of cell population proliferation1
fibroblast proliferation1
regulation of fibroblast proliferation1
cell cycle1
regulation of transcription by RNA polymerase II1
transcription initiation at RNA polymerase II promoter1
regulation of DNA-templated transcription initiation1
type B pancreatic cell proliferation1
regulation of epithelial cell proliferation1
response to lipopolysaccharide1
cellular response to molecule of bacterial origin1
cellular response to oxygen-containing compound1
response to interleukin-41
cellular response to cytokine stimulus1
cellular response to alcohol1

Protein interactions and networks

STRING

7256 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
CDK4CCND1P24385999
CDK4CDKN2AP42771999
CDK4CCNL2Q96S94999
CDK4CDKN1AP38936998
CDK4CDKN2BP42772998
CDK4CCND2P30279997
CDK4CCND3P30281997
CDK4CDKN2CP42773997
CDK4CDKN2DP55273997
CDK4CDC37Q16543996
CDK4CDKN1BP46527996
CDK4CCNA2P20248996
CDK4HSP90AB1P08238992
CDK4HSP90AA1P07900990
CDK4RB1P06400985

IntAct

438 interactions, top by confidence:

ABTypeScore
CDK4CCND1psi-mi:“MI:0915”(physical association)0.990
CCND1CDK4psi-mi:“MI:0915”(physical association)0.990
CCND1CDK4psi-mi:“MI:0407”(direct interaction)0.990
CDK4CCND1psi-mi:“MI:0914”(association)0.990
CCND3CDK4psi-mi:“MI:0915”(physical association)0.980
CDK4CCND3psi-mi:“MI:0915”(physical association)0.980
CDK4CCND3psi-mi:“MI:0914”(association)0.980

BioGRID (718): CDK4 (Affinity Capture-Western), CDK4 (Affinity Capture-Western), CDK4 (Two-hybrid), CDK4 (Two-hybrid), CDKN2C (Two-hybrid), CDKN2D (Two-hybrid), HOOK1 (Two-hybrid), RB1 (Biochemical Activity), HIST1H1A (Biochemical Activity), RB1 (Biochemical Activity), CDK4 (Affinity Capture-MS), CDK4 (Affinity Capture-MS), CDK4 (Affinity Capture-MS), CDK4 (Affinity Capture-MS), HSP90AA1 (Affinity Capture-MS)

ESM2 similar proteins: A8WIP6, B2MVY4, G5ECH7, O74456, P00546, P04551, P11802, P20911, P25859, P30285, P35426, P38973, P48609, P49615, P50613, P51166, P51952, P53778, P54119, P54664, P54665, P54666, P79432, Q00534, Q00535, Q00646, Q02399, Q03114, Q03147, Q06309, Q0J4I1, Q2PQN9, Q2QSL4, Q2V419, Q32KY4, Q38772, Q38774, Q38775, Q4KM34, Q5R7I7

Diamond homologs: B2MVY4, G5ECH7, O35832, O55076, O60145, O74456, O96821, P00546, P04551, P06493, P11440, P11802, P13863, P17157, P23111, P23437, P23572, P23573, P24033, P24100, P24923, P24941, P29618, P29619, P30285, P34112, P34117, P35426, P35567, P38973, P39951, P43063, P43450, P48609, P48734, P48963, P49615, P51166, P51958, P52389

SIGNOR signaling

73 interactions.

AEffectBMechanism
MYC“up-regulates quantity by expression”CDK4“transcriptional regulation”
CDK4down-regulatesRB1phosphorylation
CDKN2Adown-regulatesCDK4binding
CDK4down-regulatesBRCA1phosphorylation
CDK4down-regulatesRASSF1phosphorylation
CDK4up-regulatesPELP1phosphorylation
CDK4down-regulatesMEF2Abinding
CDK4down-regulatesMEF2Cbinding
CDK4down-regulatesMEF2C
CDK4down-regulatesMEF2Dbinding
CDK4down-regulatesMYOD1binding
CDK4down-regulatesMYOGbinding
CDK4up-regulatesFOXM1phosphorylation
YES1down-regulatesCDK4phosphorylation
CDK4“down-regulates activity”SMAD3phosphorylation
CDK4down-regulatesSMAD3phosphorylation
CDK4down-regulatesRUNX3phosphorylation
4-(2,6-dichlorobenzamido)-N-(piperidin-4-yl)-pyrazole-3-carboxamidedown-regulatesCDK4“chemical inhibition”
alvocidibdown-regulatesCDK4“chemical inhibition”
“alvocidib hydrochloride”down-regulatesCDK4“chemical inhibition”
CCND1up-regulatesCDK4binding

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 77 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
G1 Phase1388.3×8e-21
Cyclin D associated events in G11560.3×5e-21
Defective binding of RB1 mutants to E2F1,(E2F2, E2F3)554.7×2e-06
Mitotic G1 phase and G1/S transition1444.5×8e-18
Aberrant regulation of mitotic cell cycle due to RB1 defects535.2×1e-05
Diseases of mitotic cell cycle534.0×2e-05
G1/S Transition728.1×4e-07
Cyclin E associated events during G1/S transition524.6×6e-05

GO biological processes:

GO termPartnersFoldFDR
positive regulation of G1/S transition of mitotic cell cycle633.9×8e-06
G1/S transition of mitotic cell cycle1028.3×2e-09
regulation of G1/S transition of mitotic cell cycle625.9×3e-05
negative regulation of cell growth510.1×6e-03
Wnt signaling pathway68.4×5e-03
regulation of cell cycle88.4×7e-04
cell division117.2×7e-05
protein stabilization76.6×5e-03

Disease & clinical

Cancer significance

From CIViC — curated cancer-variant interpretation:

CDK4, along with its partner CDK6, are key players in cell cycle progression. The complex has been implicated in a number of cancer types, and is the focus of therapeutic research and development. One targeted therapy for CDK inhibition is palbociclib, which may slow the growth of advanced stage breast cancers. It has also been shown, in mouse, that CDK inhibition may sensitize mutant PIK3CA tumors to PI3K inhibitors.

From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 1 cancer types — MEL.

Clinical variants and AI predictions

ClinVar

1127 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic3
Likely pathogenic0
Uncertain significance595
Likely benign268
Benign48

Top pathogenic / likely-pathogenic (3)

Variant IDHGVSClassification
16928NM_000075.4(CDK4):c.70C>T (p.Arg24Cys)Pathogenic
16929NM_000075.4(CDK4):c.71G>A (p.Arg24His)Pathogenic
1801589NM_000075.4(CDK4):c.279dup (p.Glu94Ter)Pathogenic

SpliceAI

1146 predictions. Top by Δscore:

VariantEffectΔscore
12:57749155:C:Adonor_gain1.0000
12:57749452:A:ACdonor_gain1.0000
12:57749453:C:CCdonor_gain1.0000
12:57749453:CT:Cdonor_gain1.0000
12:57750654:A:ACdonor_gain1.0000
12:57750655:C:CCdonor_gain1.0000
12:57750657:TTCG:Tdonor_gain1.0000
12:57750921:A:ACdonor_gain1.0000
12:57750922:C:CCdonor_gain1.0000
12:57750922:CCA:Cdonor_gain1.0000
12:57750947:G:Cdonor_gain1.0000
12:57751202:CTCA:Cdonor_loss1.0000
12:57751203:TCACC:Tdonor_loss1.0000
12:57751204:CACC:Cdonor_loss1.0000
12:57751205:A:ATdonor_loss1.0000
12:57751206:C:CGdonor_loss1.0000
12:57748614:TTTC:Tacceptor_gain0.9900
12:57748618:C:CCacceptor_gain0.9900
12:57748618:C:Gacceptor_loss0.9900
12:57748619:T:Cacceptor_loss0.9900
12:57749154:T:Adonor_gain0.9900
12:57749176:CAGTA:Cdonor_loss0.9900
12:57749177:AGTAC:Adonor_loss0.9900
12:57749178:GTACC:Gdonor_loss0.9900
12:57749179:TACC:Tdonor_loss0.9900
12:57749180:A:ATdonor_loss0.9900
12:57749181:C:CAdonor_loss0.9900
12:57749198:C:CAdonor_gain0.9900
12:57749220:C:CTdonor_gain0.9900
12:57749221:C:CTdonor_gain0.9900

AlphaMissense

1940 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
12:57750971:G:CD158E1.000
12:57750971:G:TD158E1.000
12:57750972:T:AD158V1.000
12:57750972:T:GD158A1.000
12:57750973:C:GD158H1.000
12:57751025:A:CD140E1.000
12:57751025:A:TD140E1.000
12:57751026:T:AD140V1.000
12:57751026:T:CD140G1.000
12:57751026:T:GD140A1.000
12:57751029:C:GR139P1.000
12:57751613:C:AK35N1.000
12:57751613:C:GK35N1.000
12:57749289:A:GW238R0.999
12:57749289:A:TW238R0.999
12:57750682:A:CC202W0.999
12:57750683:C:TC202Y0.999
12:57750686:C:TG201D0.999
12:57750694:C:AW198C0.999
12:57750694:C:GW198C0.999
12:57750696:A:GW198R0.999
12:57750696:A:TW198R0.999
12:57750702:C:GD196H0.999
12:57750740:G:TP183H0.999
12:57750750:A:GY180H0.999
12:57750758:G:AT177I0.999
12:57750960:G:TA162D0.999
12:57750963:A:GL161P0.999
12:57750966:C:TG160D0.999
12:57750967:C:GG160R0.999

dbSNP variants (sampled 300 via entrez): RS1000052939 (12:57751699 C>A,G,T), RS1000416664 (12:57747962 G>A,C), RS1000870693 (12:57748322 C>G), RS1001155355 (12:57749593 T>C), RS1001309614 (12:57752223 G>A), RS1002207037 (12:57749098 C>A,T), RS1002814184 (12:57753200 C>A,G), RS1002943409 (12:57753214 T>G), RS1003172820 (12:57752727 T>G), RS1003208178 (12:57747486 G>A), RS1003386519 (12:57753451 G>A), RS1004281478 (12:57751102 G>A,C), RS1004656804 (12:57750297 G>A,T), RS1004724115 (12:57748846 C>T), RS1005006906 (12:57749964 T>C)

Disease associations

OMIM: gene MIM:123829 | disease phenotypes: MIM:609048, MIM:613659, MIM:621507

GenCC curated gene-disease

DiseaseClassificationInheritance
melanoma, cutaneous malignant, susceptibility to, 3DefinitiveAutosomal dominant
malignant pancreatic neoplasmModerateAutosomal dominant

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
melanoma, cutaneous malignant, susceptibility to, 3DefinitiveAD

Mondo (7): familial melanoma (MONDO:0018961), hereditary neoplastic syndrome (MONDO:0015356), melanoma, cutaneous malignant, susceptibility to, 3 (MONDO:0012183), gastric cancer (MONDO:0001056), diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype (MONDO:0858939), microcephaly 31, primary, autosomal recessive (MONDO:0980991), malignant pancreatic neoplasm (MONDO:0009831)

Orphanet (2): Familial melanoma (Orphanet:618), Inherited cancer-predisposing syndrome (Orphanet:140162)

HPO phenotypes

19 total (19 of 19 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000488Retinopathy
HP:0000958Dry skin
HP:0001054Numerous nevi
HP:0001062Atypical nevus
HP:0001074Atypical nevi in non-sun exposed areas
HP:0001480Freckling
HP:0001482Subcutaneous nodule
HP:0001595Abnormal hair morphology
HP:0002071Abnormality of extrapyramidal motor function
HP:0002579Gastrointestinal dysmotility
HP:0002861Melanoma
HP:0002894Neoplasm of the pancreas
HP:0003764Nevus
HP:0006753Neoplasm of the stomach
HP:0012056Cutaneous melanoma
HP:0012211Abnormal renal physiology
HP:0100013Neoplasm of the breast
HP:0100763Abnormality of the lymphatic system

GWAS associations

6 associations (top):

StudyTraitp-value
GCST000987_14Celiac disease or Rheumatoid arthritis4.000000e-06
GCST002318_6Rheumatoid arthritis1.000000e-07
GCST002318_66Rheumatoid arthritis7.000000e-08
GCST006959_107Rheumatoid arthritis1.000000e-07
GCST006959_36Rheumatoid arthritis9.000000e-08
GCST010703_209Brain morphology (MOSTest)2.000000e-11

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0004346neuroimaging measurement

MeSH disease descriptors (1)

DescriptorNameTree numbers
D009386Neoplastic Syndromes, HereditaryC04.700; C16.320.700

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (19): CHEMBL1907601 (PROTEIN COMPLEX), CHEMBL2095942 (PROTEIN COMPLEX GROUP), CHEMBL2111326 (SELECTIVITY GROUP), CHEMBL3038472 (PROTEIN COMPLEX), CHEMBL3038517 (PROTEIN FAMILY), CHEMBL3301385 (PROTEIN COMPLEX), CHEMBL331 (SINGLE PROTEIN), CHEMBL3559691 (PROTEIN FAMILY), CHEMBL3885548 (PROTEIN COMPLEX), CHEMBL3885553 (PROTEIN FAMILY)

Molecules with ChEMBL bioactivity

56 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 260,604 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL189963PALBOCICLIB413,102
CHEMBL3301610ABEMACICLIB47,045
CHEMBL3545110RIBOCICLIB48,018
CHEMBL3894860TRILACICLIB42,086
CHEMBL1287853FEDRATINIB43,554
CHEMBL2028663DABRAFENIB412,430
CHEMBL2403108CERITINIB48,551
CHEMBL3301612ENCORAFENIB44,624
CHEMBL3301622GILTERITINIB42,395
CHEMBL502835NINTEDANIB48,545
CHEMBL535SUNITINIB479,020
CHEMBL2103840DINACICLIB32,257
CHEMBL3904602LEROCICLIB31,012
CHEMBL428690ALVOCIDIB327,781
CHEMBL50QUERCETIN374,559
CHEMBL4802161DALPICICLIB3423
CHEMBL522892DOVITINIB34,944
CHEMBL603469LESTAURTINIB3
CHEMBL91829RUBOXISTAURIN377
CHEMBL1276127INDIRUBIN2181
CHEMBL14762SELICICLIB2
CHEMBL1738757REBASTINIB2
CHEMBL3115681NARAZACICLIB2
CHEMBL3545283RIVICICLIB2
CHEMBL384304RG-5472
CHEMBL3905910VORUCICLIB2
CHEMBL4067549ULECACICLIB2
CHEMBL4277900CROZBACICLIB2
CHEMBL4442620RONICICLIB2
CHEMBL4446357EBVACICLIB2

Clinical evidence (CIViC)

Drug × variant × indication: 5 predictive associations from 6 curated evidence items.

VariantTherapyIndicationEffectLevelCIViC
CDK4 AmplificationPalbociclibLiposarcomaSensitivity/ResponseCIViC BEID1366 +1
CDK4 EXPRESSIONAlpelisibEstrogen-receptor Positive Breast CancerSensitivity/ResponseCIViC DEID264
CDK4 EXPRESSIONPalbociclibSarcomaSensitivity/ResponseCIViC DEID4872
CDK4 EXPRESSIONRibociclib + DexamethasoneChildhood B-cell Acute Lymphoblastic LeukemiaSensitivity/ResponseCIViC DEID7798
CDK4 R24CPalbociclibSkin MelanomaSensitivity/ResponseCIViC DEID1376

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

2 annotations.

VariantTypeLevelDrugsPhenotypes
rs2069502Other3somatropin recombinantTurner Syndrome
rs2270777Other3somatropin recombinant

PharmGKB variants

2 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs2069502AGAP2, CDK4, MARCHF9, TSPAN3132.001somatropin recombinant
rs2270777CDK432.001somatropin recombinant

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — CDK4 subfamily

Most potent curated ligand interactions (43 total), top 25:

LigandActionAffinityParameter
trilaciclibInhibition10.0pKd
culmerciclibInhibition9.46pIC50
cimpuciclibInhibition9.31pIC50
atirmociclibInhibition9.22pKi
lerociclibInhibition9.0pIC50
R547Inhibition9.0pKi
PF-06873600Inhibition8.86pKi
tibremciclibInhibition8.72pIC50
inixaciclibInhibition8.7pIC50
abemaciclibInhibition8.7pIC50
crozbaciclibInhibition8.52pIC50
ulecaciclibInhibition8.52pKi
bireociclibInhibition8.52pIC50
narazaciclibInhibition8.41pIC50
RGB-286638Inhibition8.4pIC50
Cdk4 inhibitor IIIInhibition8.22pIC50
vustanaciclibInhibition8.0pIC50
ribociclibInhibition8.0pIC50
dalpiciclibInhibition7.96pIC50
PRT3645Inhibition7.7pIC50
Ro-0505124Inhibition7.7pIC50
BSJ-03-204Inhibition7.57pIC50
CP-10Inhibition7.52pIC50
palbociclibInhibition7.36pIC50
BSJ-04-132Inhibition7.3pIC50

Binding affinities (BindingDB)

1729 measured of 2813 human assays (2876 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
4-[[6-(2,2-difluoroethyl)-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-7-oxopyrido[2,3-d]pyrimidin-2-yl]amino]-N-methylpiperidine-1-sulfonamideKI0.09 nMUS-10233188: CDK2/4/6 inhibitors
(3S,4S)-4-[[5-chloro-4-(5-fluoro-1,1-dimethyl-2,3-dihydropyrrolo[1,2-a]benzimidazol-7-yl)pyrimidin-2-yl]amino]-1-methylsulfonylpiperidin-3-olKI0.1 nMUS-10766884: Cyclin dependent kinase inhibitors
6-(2-hydroxyethyl)-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-oneKI0.11 nMUS-10233188: CDK2/4/6 inhibitors
8-cyclopentyl-N-(2-piperazin-1-ylpyrimidin-5-yl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC500.13 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
6-chloro-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-{[1-(methylsulfonyl)-piperidin-4-yl]amino}pyrido[2,3-d]pyrimidin-7(8H)-oneKI0.16 nMUS-10233188: CDK2/4/6 inhibitors
2-[8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]-7-oxopyrido[2,3-d]pyrimidin-6-yl]acetonitrileKI0.16 nMUS-10233188: CDK2/4/6 inhibitors
8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-{[1-(methylsulfonyl)piperidin-4-yl]amino}pyrido[2,3-d]pyrimidin-7(8H)-oneKI0.2 nMUS-10233188: CDK2/4/6 inhibitors
8-[(1R,3R)-3-hydroxycyclohexyl]-2-{[1-(methylsulfonyl)piperidin-4-yl]-amino}pyrido[2,3-d]pyrimidin-7(8H)-oneKI0.26 nMUS-10233188: CDK2/4/6 inhibitors
8-phenyl-N-(4-piperazin-1-ylphenyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC500.32 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-(4-piperazin-1-ylphenyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC500.45 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
4-[[6-fluoro-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-7-oxopyrido[2,3-d]pyrimidin-2-yl]amino]-N-methylpiperidine-1-sulfonamideKI0.48 nMUS-10233188: CDK2/4/6 inhibitors
8-Cyclopentyl-2-[4-(2-diethylaminoethoxy)phenylamino]-8H-pyrido[2,3-d]pyrimidin-7-oneIC500.7 nM
2-[[(3S,5R)-3,5-dimethylmorpholin-4-yl]methyl]-7-[5-fluoro-2-[[(3S,4R)-3-hydroxyoxan-4-yl]amino]pyrimidin-4-yl]-3-methyl-1-propan-2-ylquinolin-4-oneIC500.8 nMUS-20250136586: Substituted 7-(Pyrimidin-4-yl)Quinolin-4(1H)-One Compounds as Cyclin Dependent Kinase Inhibitors
8-cyclopentyl-N-(4-piperazin-1-ylphenyl)-4,6,8,10-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC500.83 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-(5-methyl-6-piperazin-1-yl-3-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC500.91 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-(2-bicyclo[2.2.1]heptanyl)-N-(5-piperazin-1-yl-2-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC500.94 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-[6-[4-(dimethylamino)piperidin-1-yl]-3-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC500.97 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-[6-[4-(dimethylamino)piperidin-1-yl]pyridazin-3-yl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
9-cyclohexyl-N-(4-piperazin-1-ylphenyl)pyrimido[4,5-b]indol-2-amineIC501 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-[6-[4-(diethylamino)piperidin-1-yl]pyridazin-3-yl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
10-chloro-8-cyclopentyl-N-[5-[4-(dimethylamino)piperidin-1-yl]-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
2-[4-[[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]-3-pyridinyl]methyl]piperazin-1-yl]acetic acidIC501 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
(3R,4R)-1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]-3-(dimethylamino)piperidin-4-olIC501 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
5-{[(5-tert-butyl-1,3-oxazol-2-yl)methyl]sulfanyl}-N-(pyrimidin-4-yl)-1,3-thiazol-2-amineIC501 nM
4-[(4-{pyrazolo[1,5-a]pyridazin-3-yl}pyrimidin-2-yl)amino]benzonitrileIC501 nM
N-(3,4-dichlorophenyl)-4-{pyrazolo[1,5-a]pyridazin-3-yl}pyrimidin-2-amineIC501 nM
N-(3,5-difluorophenyl)-4-{pyrazolo[1,5-a]pyridazin-3-yl}pyrimidin-2-amineIC501 nM
2-[[(3S,5S)-3,5-dimethylmorpholin-4-yl]methyl]-7-[5-fluoro-2-[[(3S,4R)-3-hydroxyoxan-4-yl]amino]pyrimidin-4-yl]-3-methyl-1-propan-2-ylquinolin-4-oneIC501.1 nMUS-20250136586: Substituted 7-(Pyrimidin-4-yl)Quinolin-4(1H)-One Compounds as Cyclin Dependent Kinase Inhibitors
8-cyclopentyl-N-[5-(4-propan-2-ylpiperazin-1-yl)-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.2 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-(4-methylcyclohexyl)-N-(5-piperazin-1-yl-2-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.2 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
9-cyclohexyl-N-(5-piperazin-1-yl-2-pyridinyl)pyrimido[4,5-b]indol-2-amineIC501.3 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
N-[5-[3-(aminomethyl)piperidin-1-yl]-2-pyridinyl]-8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.3 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-[5-(1,2,3,6-tetrahydropyridin-4-yl)-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.3 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
(2R)-3-[[1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]piperidin-4-yl]amino]propane-1,2-diolIC501.3 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
2-[4-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]piperazin-1-yl]acetic acidIC501.39 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-(6-piperazin-1-yl-3-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.4 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-[5-[4-(methylamino)piperidin-1-yl]-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.4 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]-3-pyridinyl]-piperazin-1-ylmethanoneIC501.4 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
3-[[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]amino]propan-1-olIC501.4 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
6-chloro-8-cyclopentyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-oneKI1.4 nMUS-10233188: CDK2/4/6 inhibitors
8-cyclopentyl-N-(6-piperazin-1-ylpyridazin-3-yl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.5 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
(2S)-2-[[1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]piperidin-4-yl]amino]propan-1-olIC501.5 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
(3R)-1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]pyrrolidin-3-olIC501.6 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-(1-adamantyl)-N-(5-piperazin-1-yl-2-pyridinyl)-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.6 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
8-cyclopentyl-N-[5-(1,4-diazepan-1-yl)-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.6 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
N-[6-(4-aminopiperidin-1-yl)pyridazin-3-yl]-8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.6 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
7-[5-fluoro-2-[[(3S,4R)-3-hydroxyoxan-4-yl]amino]pyrimidin-4-yl]-2-[[(3R)-3-hydroxypiperidin-1-yl]methyl]-3-methyl-1-propan-2-ylquinolin-4-oneIC501.6 nMUS-20250136586: Substituted 7-(Pyrimidin-4-yl)Quinolin-4(1H)-One Compounds as Cyclin Dependent Kinase Inhibitors
7-[5-fluoro-2-[[(3S,4R)-3-hydroxyoxan-4-yl]amino]pyrimidin-4-yl]-3-methyl-1-propan-2-yl-2-pyrrolidin-2-ylquinolin-4-oneIC501.6 nMUS-20250136586: Substituted 7-(Pyrimidin-4-yl)Quinolin-4(1H)-One Compounds as Cyclin Dependent Kinase Inhibitors
8-cyclopentyl-N-[5-[(3R)-3-methylpiperazin-1-yl]-2-pyridinyl]-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-amineIC501.7 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors
(2R)-1-[[1-[6-[(8-cyclopentyl-4,6,8,11-tetrazatricyclo[7.4.0.02,7]trideca-1(9),2,4,6,10,12-hexaen-5-yl)amino]pyridazin-3-yl]piperidin-4-yl]amino]propan-2-olIC501.7 nMUS-8841312: Fused pyridine, pyrimidine and triazine compounds as cell cycle inhibitors

ChEMBL bioactivities

4187 potent at pChembl≥5 of 4533 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.59IC500.026nMCHEMBL151546
10.33Ki0.047nMCHEMBL5272948
10.15IC500.07nMCHEMBL5841163
10.10IC500.08nMCHEMBL148580
10.10IC500.08nMCHEMBL6064669
10.00IC500.1nMCHEMBL5198209
10.00Ki0.1nMCHEMBL5266837
10.00Ki0.1nMCHEMBL5795283
10.00Ki0.1nMCHEMBL5799855
10.00Ki0.1nMCHEMBL5805872
10.00Ki0.1nMCHEMBL5876670
10.00Ki0.1nMCHEMBL6001085
10.00Ki0.1nMCHEMBL5882519
10.00Ki0.1nMCHEMBL6001033
10.00Ki0.1nMCHEMBL5749795
10.00Ki0.1nMCHEMBL6052225
10.00Ki0.1nMCHEMBL5907078
10.00Ki0.1nMCHEMBL5783305
10.00Ki0.1nMCHEMBL6026426
10.00Ki0.1nMCHEMBL5786491
10.00IC500.1nMCHEMBL5765852
9.96IC500.11nMCHEMBL5941236
9.96IC500.11nMCHEMBL6043427
9.92IC500.12nMCHEMBL5748748
9.89IC500.13nMCHEMBL3698644
9.89Ki0.13nMEBVACICLIB
9.85IC500.14nMCHEMBL4208172
9.80Ki0.16nMCHEMBL4750658
9.80Ki0.16nMCHEMBL5746772
9.80Ki0.16nMCHEMBL5281860
9.80IC500.16nMCHEMBL5981421
9.77IC500.17nMCHEMBL6064669
9.74IC500.18nMCHEMBL5786556
9.72Ki0.19nMCHEMBL5281860
9.71Ki0.196nMCHEMBL5278015
9.70IC500.2nMCHEMBL4453997
9.70Ki0.2nMCHEMBL5280928
9.70Ki0.2nMCHEMBL5921011
9.70Ki0.2nMCHEMBL6041338
9.70Ki0.2nMCHEMBL5982367
9.70Ki0.2nMCHEMBL5982735
9.70Ki0.2nMCHEMBL5851399
9.70Ki0.2nMCHEMBL5960728
9.70Ki0.2nMCHEMBL5782517
9.70Ki0.2nMCHEMBL5962008
9.70Ki0.2nMCHEMBL5801501
9.70Ki0.2nMCHEMBL5921680
9.70Ki0.2nMCHEMBL6001026
9.70Ki0.2nMCHEMBL5813123
9.70IC500.2nMCHEMBL5751717

PubChem BioAssay actives

2877 with measured affinity, of 5471 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
8-cyclopentyl-6-methyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki<0.0001uM
[3-(5-chlorothiophen-3-yl)-4-oxo-1H-indeno[2,1-d]pyrazol-5-yl]urea1607703: Inhibition of CDK4 (unknown origin)ic50<0.0001uM
1-morpholin-4-yl-3-[4-oxo-3-[5-(piperazine-1-carbonyl)thiophen-2-yl]-2H-indeno[1,2-c]pyrazol-5-yl]urea1607703: Inhibition of CDK4 (unknown origin)ic50<0.0001uM
6-(difluoromethyl)-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1924112: Inhibition of CDK4 (unknown origin) assessed as inhibition constantki0.0001uM
2-(2-ethylphenyl)-5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2,3-dihydrochromen-4-one1868057: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0001uM
8-cyclopentyl-6-(cyclopropyloxymethyl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0001uM
2-(4-carbamimidoylpiperazin-1-yl)-N-[3-(4-methoxyphenyl)-4-oxo-1H-indeno[2,1-d]pyrazol-5-yl]acetamide1607703: Inhibition of CDK4 (unknown origin)ic500.0001uM
6-(2,2-difluoroethyl)-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0002uM
6-(2,2-difluoroethyl)-8-[(1S,2S)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1685179: Inhibition of non-phosphorylated CDK4/Cyclin D3 (unknown origin) assessed as reduction in production of ADP using 5-FAM-RRRFRPASPLRGPPK peptide as substrate preincubated with enzyme for 12 mins and measured after 35 mins in presence of ATP by fluorescence-based microfluidic mobility shift assayki0.0002uM
8-cyclopentyl-6-(2-methoxyethyl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0002uM
3-(4-methoxyphenyl)-4-oxo-1H-indeno[2,1-d]pyrazole-5-carbaldehyde1607703: Inhibition of CDK4 (unknown origin)ic500.0002uM
8-cyclopentyl-6-(ethoxymethyl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0002uM
6-acetyl-8-cyclopentyl-5-methyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0002uM
N-(3-nitrophenyl)-4-pyrazolo[1,5-b]pyridazin-3-ylpyrimidin-2-amine348894: Inhibition of CDK4 by radioactive glutathione plate-binding assayic500.0003uM
5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)-N-(5-piperazin-1-yl-2-pyridinyl)pyrimidin-2-amine2107973: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0003uM
6-chloro-8-cyclopentyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0003uM
2-[8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]-7-oxopyrido[2,3-d]pyrimidin-6-yl]acetonitrile1685179: Inhibition of non-phosphorylated CDK4/Cyclin D3 (unknown origin) assessed as reduction in production of ADP using 5-FAM-RRRFRPASPLRGPPK peptide as substrate preincubated with enzyme for 12 mins and measured after 35 mins in presence of ATP by fluorescence-based microfluidic mobility shift assayki0.0003uM
N-[5-(6-ethyl-2,6-diazaspiro[3.3]heptan-2-yl)-2-pyridinyl]-5-fluoro-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assayki0.0003uM
5-fluoro-N-[5-(4-methylpiperazin-1-yl)-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assayki0.0003uM
5-fluoro-N-[5-[6-(3-fluoropropyl)-2,6-diazaspiro[3.3]heptan-2-yl]-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assayki0.0003uM
5-fluoro-N-[5-[6-(2-fluoroethyl)-2,6-diazaspiro[3.3]heptan-2-yl]-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assayki0.0003uM
5-fluoro-N-[5-(6-methyl-2,6-diazaspiro[3.3]heptan-2-yl)-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assayki0.0003uM
N-[5-(2,5-diazabicyclo[2.2.1]heptan-2-yl)-2-pyridinyl]-5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-amine2107973: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0003uM
5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)-N-(5-piperidin-4-yl-2-pyridinyl)pyrimidin-2-amine2107973: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0004uM
6-chloro-8-[(1R,2R)-2-hydroxy-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0004uM
5-fluoro-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]-N-(5-morpholin-4-yl-2-pyridinyl)pyrimidin-2-amine1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assayki0.0004uM
5-fluoro-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]-N-[5-[6-(oxetan-3-yl)-2,6-diazaspiro[3.3]heptan-2-yl]-2-pyridinyl]pyrimidin-2-amine1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assayki0.0004uM
2-[8-cyclopentyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]-7-oxopyrido[2,3-d]pyrimidin-6-yl]acetonitrile1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0005uM
8-cyclohexyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0005uM
8-cyclopentyl-6-(2-hydroxyethyl)-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0005uM
Abemaciclib2198994: Inhibition of human CDK4/cyclin D1 preincubated with compound for 20 mins followed by [33P]ATP addition and measured after 2 hrs by filter binding methodic500.0005uM
[4-[6-[[5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-yl]amino]-3-pyridinyl]piperazin-2-yl]methanol2107973: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0006uM
5-fluoro-4-(5-fluoro-1,1-dimethyl-2,3-dihydropyrrolo[1,2-a]benzimidazol-7-yl)-N-[5-(piperazin-1-ylmethyl)-2-pyridinyl]pyrimidin-2-amine1374354: Inhibition of CDK4 (unknown origin) after 90 mins by ADP-Glo assayic500.0006uM
5-fluoro-4-(5-fluoro-1-methyl-2,3-dihydro-1H-pyrrolo[1,2-a]benzimidazol-7-yl)-N-[5-[(4-propan-2-ylpiperazin-1-yl)methyl]-2-pyridinyl]pyrimidin-2-amine1374354: Inhibition of CDK4 (unknown origin) after 90 mins by ADP-Glo assayic500.0006uM
8-cycloheptyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0006uM
N-[5-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-pyridinyl]-5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-amine2107973: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0006uM
4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2148049: Binding affinity to human CDK4 incubated for 45 mins by Kinobead based pull down assaykd0.0006uM
2-(4-chlorophenyl)-5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2,3-dihydrochromen-4-one1868057: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0006uM
2-(2-bromophenyl)-5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2,3-dihydrochromen-4-one1868057: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0006uM
[4-amino-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrimidin-5-yl]-(2,3-difluoro-6-methoxyphenyl)methanone624780: Binding constant for CDK4-cyclinD1 kinase domainkd0.0006uM
6-[2-(dimethylamino)ethyl]-N-[5-fluoro-4-(7-fluoro-2-methyl-3-propan-2-ylbenzimidazol-5-yl)pyrimidin-2-yl]-7,8-dihydro-5H-1,6-naphthyridin-2-amine1509614: Inhibition of recombinant human full length N-terminal GST-tagged CDK4 (1 to 303 residues)/cyclin D3 (1 to 292 residues) expressed in baculovirus expression system using eIF4E-binding protein 1 peptide and ATP as substrate incubated for 30 mins by LANCE ultra kinase assayic500.0007uM
8-cyclopentyl-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0007uM
8-cyclopentyl-2-[4-[2-(diethylamino)ethoxy]anilino]pyrido[2,3-d]pyrimidin-7-one1795862: CDKs Assay from Article 10.1021/jm000271k: “Pyrido[2,3-d]pyrimidin-7-one inhibitors of cyclin-dependent kinases.”ic500.0007uM
N-[5-[(4-ethylpiperazin-1-yl)methyl]-2-pyridinyl]-5-fluoro-4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-amine2107973: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0008uM
5-fluoro-4-(5-fluoro-1,1-dimethyl-2,3-dihydropyrrolo[1,2-a]benzimidazol-7-yl)-N-[5-[(4-methylpiperazin-1-yl)methyl]-2-pyridinyl]pyrimidin-2-amine1374354: Inhibition of CDK4 (unknown origin) after 90 mins by ADP-Glo assayic500.0008uM
8-[(1R,2S)-2-methylcyclopentyl]-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-7-one1933532: Inhibition of CDK4/cyclin D1 (unknown origin) assessed as reduction in substrate peptide phosphorylation using DYRKtide peptide as substrate preincubated for 12 mins followed by ATP addition and measured for 45 mins by mobility shift assayki0.0008uM
5-fluoro-N-[5-(1-methylpiperidin-4-yl)-2-pyridinyl]-4-[(4R)-4-methyl-5,6,7,8-tetrahydro-4H-pyrazolo[1,5-a]azepin-3-yl]pyrimidin-2-amine1588588: Inhibition of human full length GST-tagged CDK4 (1 to 303(end) amino acids)/Cyclin D3 (1 to 292(end) amino acids) expressed in baculovirus expression system assessed as inhibition constant using Ulight-4E-BP1 as substrate preincubated for 30 mins followed by substrate addition and incubated for 90 mins by TR-FRET assayki0.0008uM
1-[8-methyl-12-(4-piperazin-1-ylanilino)-4-propan-2-yl-2,5,11,13-tetrazatricyclo[7.4.0.02,6]trideca-1(13),3,5,7,9,11-hexaen-7-yl]ethanone1737183: Inhibition of recombinant human full-length N-terminal GST-fused CDK4 (1 to 303 residues)/GST-tagged CyclinD3 (1 to 292 residues) expressed in baculovirus expression system using ULight-elF4E-binding protein 1 peptide as substrate measured after 30 mins by LANCE assayic500.0008uM
5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2-pyridin-4-yl-2,3-dihydrochromen-4-one1868057: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0008uM
5,7-dihydroxy-8-[(3R,4S)-3-hydroxy-1-methylpiperidin-4-yl]-2-(3-methylphenyl)-2,3-dihydrochromen-4-one1868057: Inhibition of CDK4/Cyclin D1 (unknown origin)ic500.0008uM

CTD chemical–gene interactions

294 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
palbociclibdecreases reaction, increases phosphorylation, increases reaction, decreases activity, increases expression (+3 more)8
Resveratroldecreases reaction, increases activity, increases expression, affects binding, decreases activity (+5 more)8
sodium arseniteaffects cotreatment, affects binding, decreases activity, decreases expression, decreases reaction (+2 more)6
(+)-JQ1 compounddecreases reaction, increases expression, decreases expression, increases reaction5
Benzo(a)pyreneaffects methylation, increases expression, increases methylation, increases reaction, affects reaction5
Estradiolaffects binding, decreases reaction, increases activity, decreases phosphorylation, increases expression (+1 more)5
abemaciclibaffects binding, decreases reaction, decreases activity4
bisphenol Aincreases expression, decreases reaction, affects cotreatment4
methylselenic acidincreases reaction, decreases activity, decreases expression, affects binding4
Arsenic Trioxidedecreases reaction, increases expression4
Cisplatinaffects binding, decreases activity, decreases expression, decreases reaction, increases expression (+2 more)4
Nanotubes, Carbondecreases expression, affects cotreatment, increases expression4
tanespimycindecreases expression3
Arsenicaffects methylation, increases expression, affects cotreatment, decreases expression3
Cannabidioldecreases expression, affects cotreatment3
Curcumindecreases expression3
Quercetindecreases expression, decreases reaction, increases activity, increases expression3
Tetrachlorodibenzodioxinincreases phosphorylation, increases activity, increases reaction, decreases reaction, increases expression (+2 more)3
Cadmium Chloridedecreases expression, increases expression3
ribociclibdecreases activity, affects binding, decreases reaction2
picrasidine Iincreases expression, decreases expression2
tubocapsenolide Adecreases reaction, increases degradation, decreases expression2
geranioldecreases expression2
beta-iononedecreases expression2
trichostatin Adecreases expression2
indole-3-carbinoldecreases activity, increases expression, decreases expression2
2-oxindoleaffects binding, decreases activity2
perfluorooctanoic acidincreases expression2
perfluorooctane sulfonic acidincreases expression2
alvocidibaffects binding, decreases activity2

ChEMBL screening assays

1142 unique, capped per target: 1086 binding, 53 functional, 2 admet, 1 toxicity

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1016197BindingInhibition of CDK4/Cyclin D1 assessed as inhibition of retinoblastoma susceptibility gene product phosphorylationDiscovery of 4-(benzylaminomethylene)isoquinoline-1,3-(2H,4H)-diones and 4-[(pyridylmethyl)aminomethylene]isoquinoline-1,3-(2H,4H)-diones as potent and selective inhibitors of the cyclin-dependent kinase 4. — J Med Chem
CHEMBL666092FunctionalInhibition of Rb21 phosphorylation by Cyclin D1-cyclin-dependent kinase 4Novel, potent and selective cyclin D1/CDK4 inhibitors: indolo[6,7-a]pyrrolo[3,4-c]carbazoles. — Bioorg Med Chem Lett
CHEMBL4325186ADMETInhibition of human CDK4/Cyclin D3 at 1 uM relative to controlSelectivity and Physicochemical Optimization of Repurposed Pyrazolo[1,5-b]pyridazines for the Treatment of Human African Trypanosomiasis. — J Med Chem

Cellosaurus cell lines

131 cell lines: 69 telomerase immortalized cell line, 56 cancer cell line, 6 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_0526SK-MEL-28Cancer cell lineMale
CVCL_0B76WM3630Cancer cell lineSex unspecified
CVCL_0B78WM3704Cancer cell lineSex unspecified
CVCL_1135COLO 800Cancer cell lineMale
CVCL_2240WM39Cancer cell lineMale
CVCL_3878SK-MEL-37Cancer cell lineMale
CVCL_52391205LuCancer cell lineMale
CVCL_6031SK-MEL-29Cancer cell lineMale
CVCL_6036SK-MEL-39Cancer cell lineMale
CVCL_6793WM1791CCancer cell lineMale

Clinical trials (associated diseases)

590 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00280709PHASE4COMPLETEDBiliary Metal Stent Study: Metal Stents for Management of Distal Malignant Biliary Obstruction
NCT00365508PHASE4COMPLETEDCounseling and Nicotine Replacement Therapy in Helping Adult Smokers Quit Smoking
NCT00558155PHASE4COMPLETEDThe Impact of Immunostimulating Nutrition on the Outcome of Surgery
NCT00576940PHASE4COMPLETEDStandard and Immunostimulating Enteral Nutrition in Surgical Patients
NCT00578279PHASE4COMPLETEDEndoscopic Ultrasound-guided Celiac Plexus Neurolysis (EUS-CPN)With Alcohol in Unresectable Pancreatic Cancer: a Pilot Study
NCT00583479PHASE4COMPLETEDProspective Study of Celiac Block Injection: 1 vs. 2
NCT00642733PHASE4TERMINATEDA Study of First Line Treatment With Tarceva (Erlotinib) in Combination With Gemcitabine in Patients With Locally Advanced Unresectable or Metastatic Pancreatic Cancer
NCT00666978PHASE4COMPLETEDHealth Education Counseling With or Without Bupropion in Helping African Americans Stop Smoking
NCT00920023PHASE4COMPLETEDPre-Operative Staging of Pancreatic Cancer Using Superparamagnetic Iron Oxide Magnetic Resonance Imaging (SPIO MRI)
NCT00966277PHASE4COMPLETEDDalteparin for Primary Venous Thromboembolism (VTE) Prophylaxis in Pancreatic Cancer Patients
NCT01041612PHASE4COMPLETEDComparing Covered Self-expandable Metallic Stent (SEMS) Above/Across the Sphincter of Oddi
NCT01111591PHASE4UNKNOWNCyclooxygenase-2 Inhibitor for Adjuvant Anticancer Effect in Patients With Biliary-pancreas Cancer
NCT01256034PHASE4COMPLETEDEffects of Preoperative Immunonutrition in Patients Undergoing Pancreaticoduodenectomy
NCT01642875PHASE4UNKNOWNEarly Oral Versus Enteral Nutrition After Pancreatoduodenectomy
NCT01768988PHASE4TERMINATEDEfficacy Of Pregabalin In The Treatment Of Pancreatic Cancer Pain. A Randomized Controlled Double-Blind, Parallel Group Study
NCT02027311PHASE4COMPLETEDEtomidate vs. Midazolam for Sedation During ERCP
NCT02044224PHASE4COMPLETEDEffects of Dexmedetomidine During IRE Procedures for Solid Tumours
NCT03642093PHASE4UNKNOWNHOPE - A Study to Evaluate the Effect of a Prehabilitation Program on GI Cancer Patients Planning to Undergo Surgery
NCT03891979PHASE4WITHDRAWNGut Microbiome Modulation to Enable Efficacy of Checkpoint-based Immunotherapy in Pancreatic Adenocarcinoma
NCT04025840PHASE4ACTIVE_NOT_RECRUITINGPerioperative Epidural Block and Dexamethasone in Pancreatic Cancer Surgery
NCT04058236PHASE4UNKNOWNGlycocalyx Levels in Patients Undergoing Pancreatectomy
NCT04155008PHASE4TERMINATEDNutrition and Pharmacological Algorithm for Oncology Patients Study
NCT04217096PHASE4UNKNOWNEfficacy and Safety of Paclitaxel Liposome and S-1 as First-line Therapy in \ Advanced Pancreatic Cancer Patients
NCT04269369PHASE4UNKNOWNImplementation of Pre-emptive Geno- and Phenotyping in 5-Fluorouracil- or Capecitabine-treated Patients
NCT04809935PHASE4UNKNOWNEUS-Coeliac Plexus Block Versus Radiofrequency Ablation in Pain Relief of Patients With Malignancy
NCT05035147PHASE4RECRUITINGAlbumin-bound Paclitaxel Combined With Gemcitabine First-line Inoperable Pancreatic Cancer
NCT05245877PHASE4RECRUITINGPre- Vs. Postoperative Thromboprophylaxis in Pancreatic Surgery
NCT05784311PHASE4RECRUITINGStandard Versus Prolonged Antibiotic Prophylaxis After Pancreatoduodenectomy (SPARROW)
NCT06316908PHASE4COMPLETEDPermanent Celiac Plexus Block: Comparison of Pain Score in Unilateral and Bilateral Posterior Percutaneous Approach
NCT06779318PHASE4NOT_YET_RECRUITINGMaintenance Chemotherapy With S-1 vs. Observation After Adjuvant Therapy for Resected Pancreatic Cancer With High Risk of Recurrence/Metastasis
NCT07557394PHASE4NOT_YET_RECRUITINGA Prospective Non-randomized Controlled Interventional Study on the Effect of Shouhui Tongbian Capsules Combined With Pancreatin Enteric-coated Capsules on Pancreatic Exocrine Function in Patients After Curative Resection for Pancreatic Cancer
NCT01038154PHASE4UNKNOWNStudy to Evaluate the Efficacy of Pravastatin on Survival and Recurrence of Advanced Gastroesophageal Cancer
NCT01234272PHASE4COMPLETEDComparison of the Analgesic Effect Between Intrathecal Morphine and IV-fentanyl Patient Controlled Analgesia (ITM-IVPCA) and Epidural PCA (PCEA) in Patients Undergoing Gastrectomy -Randomized Allocation Study-
NCT01260194PHASE4TERMINATEDA Study of Herceptin (Trastuzumab) in Combination With Standard Chemotherapy in Patients With HER Positive Metastatic Gastric Cancer
NCT01271582PHASE4UNKNOWNInvestigation of Association Between UGT1A1 Polymorphisms and Irinotecan Toxicity in Korean Patients
NCT01401075PHASE4COMPLETEDRCT With Adjuvant Mistletoe Treatment in Gastric Cancer Patients
NCT01471756PHASE4COMPLETEDImproving Complete Endoscopic Mucosal Resection (EMR) of Colorectal Neoplasia
NCT01766765PHASE4UNKNOWNEarly Jejunostomy Nutrition Minimizes Time to Chemotherapy
NCT01910948PHASE4UNKNOWNPerioperative Application of Omega-3 Polyunsaturated Fatty Acids in Gastric Cancer Patients
NCT01927328PHASE4UNKNOWNIron Replacement in Oesophagogastric Neoplasia