CDR2-DT

Summary

CDR2-DT (CDR2 divergent transcript, HGNC:55381) is a long non-coding RNA gene on chromosome 16p12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55381
Approved symbol	CDR2-DT
Name	CDR2 divergent transcript
Location	16p12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260790
Ensembl biotype	lncRNA
Entrez	440346
RNAcentral	URS000015C322 — lncRNA, 611 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000567158, ENST00000568827

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000567158 — 3 exons

Exon	Start	End
ENSE00002580221	22378141	22378180
ENSE00002598255	22374887	22375223
ENSE00002617662	22375327	22375560

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 84.02.

Top tissues by expression

192 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.02	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.07	gold quality
sural nerve	UBERON:0015488	73.06	gold quality
colonic epithelium	UBERON:0000397	65.25	silver quality
hindlimb stylopod muscle	UBERON:0004252	60.17	gold quality
cortical plate	UBERON:0005343	59.26	gold quality
lower lobe of lung	UBERON:0008949	57.43	silver quality
buccal mucosa cell	CL:0002336	55.21	silver quality
ganglionic eminence	UBERON:0004023	55.16	silver quality
stromal cell of endometrium	CL:0002255	54.07	silver quality
monocyte	CL:0000576	52.84	silver quality
calcaneal tendon	UBERON:0003701	50.47	silver quality
prefrontal cortex	UBERON:0000451	49.12	gold quality
endocervix	UBERON:0000458	48.01	gold quality
muscle of leg	UBERON:0001383	47.92	gold quality
lymph node	UBERON:0000029	47.67	gold quality
gall bladder	UBERON:0002110	47.42	silver quality
gastrocnemius	UBERON:0001388	47.08	gold quality
islet of Langerhans	UBERON:0000006	46.99	gold quality
upper leg skin	UBERON:0004262	46.90	silver quality
right lung	UBERON:0002167	46.83	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.36	gold quality
tendon of biceps brachii	UBERON:0008188	45.93	gold quality
blood	UBERON:0000178	45.74	silver quality
tonsil	UBERON:0002372	45.60	gold quality
uterine cervix	UBERON:0000002	45.59	silver quality
vermiform appendix	UBERON:0001154	45.31	silver quality
left lobe of thyroid gland	UBERON:0001120	45.29	gold quality
pancreas	UBERON:0001264	45.10	silver quality
thyroid gland	UBERON:0002046	45.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.34

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.