CDY1B
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Summary
CDY1B (chromodomain Y-linked 1B, HGNC:23920) is a protein-coding gene on chromosome Yq11.23, encoding Testis-specific chromodomain protein Y 1 (Q9Y6F8). Has histone acetyltransferase activity, with a preference for histone H4.
This gene encodes a protein containing a chromodomain and a histone acetyltransferase catalytic domain. Chromodomain proteins are components of heterochromatin-like complexes and can act as gene repressors. This protein is localized to the nucleus of late spermatids where histone hyperacetylation takes place. Histone hyperacetylation is thought to facilitate the transition in which protamines replace histones as the major DNA-packaging protein. The human chromosome Y has two identical copies of this gene within a palindromic region; this record represents the more centromeric copy. Chromosome Y also contains a pair of closely related genes in another more telomeric palindrome as well as several related pseudogenes. Two protein isoforms are encoded by transcript variants of this gene. Additional transcript variants have been described, but their full-length nature has not been determined.
Source: NCBI Gene 253175 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 1 total — 1 pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_001003894
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23920 |
| Approved symbol | CDY1B |
| Name | chromodomain Y-linked 1B |
| Location | Yq11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000172352 |
| Ensembl biotype | protein_coding |
| Entrez | 253175 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000306882, ENST00000382407
RefSeq mRNA: 2 — MANE Select: NM_001003894
NM_001003894, NM_001003895
CCDS: CCDS35486, CCDS35487
Canonical transcript exons
ENST00000382407 — 1 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001491983 | 24045793 | 24048019 |
Expression profiles
Bgee: expression breadth tissue_specific, 4 present calls, max score 46.15.
Top tissues by expression
132 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| testis | UBERON:0000473 | 46.15 | gold quality |
| left testis | UBERON:0004533 | 46.11 | gold quality |
| right testis | UBERON:0004534 | 45.48 | gold quality |
| colonic epithelium | UBERON:0000397 | 37.20 | gold quality |
| ventricular zone | UBERON:0003053 | 36.48 | gold quality |
| cortical plate | UBERON:0005343 | 36.47 | gold quality |
| bone marrow cell | CL:0002092 | 36.16 | gold quality |
| ganglionic eminence | UBERON:0004023 | 35.49 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 33.38 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 32.15 | gold quality |
| bone marrow | UBERON:0002371 | 31.74 | gold quality |
| muscle tissue | UBERON:0002385 | 31.06 | gold quality |
| sural nerve | UBERON:0015488 | 30.93 | gold quality |
| stromal cell of endometrium | CL:0002255 | 29.87 | gold quality |
| prefrontal cortex | UBERON:0000451 | 29.04 | gold quality |
| duodenum | UBERON:0002114 | 28.14 | gold quality |
| liver | UBERON:0002107 | 28.04 | gold quality |
| lymph node | UBERON:0000029 | 27.57 | gold quality |
| tonsil | UBERON:0002372 | 27.05 | gold quality |
| islet of Langerhans | UBERON:0000006 | 26.55 | gold quality |
| vermiform appendix | UBERON:0001154 | 26.42 | gold quality |
| leukocyte | CL:0000738 | 26.19 | gold quality |
| blood | UBERON:0000178 | 26.14 | gold quality |
| monocyte | CL:0000576 | 26.05 | gold quality |
| gall bladder | UBERON:0002110 | 25.98 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 25.89 | gold quality |
| placenta | UBERON:0001987 | 25.81 | gold quality |
| urinary bladder | UBERON:0001255 | 25.72 | gold quality |
| muscle of leg | UBERON:0001383 | 24.87 | gold quality |
| primary visual cortex | UBERON:0002436 | 24.61 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
27 targeting CDY1B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-520F-3P | 99.82 | 71.32 | 1216 |
| HSA-MIR-4804-3P | 99.65 | 67.78 | 866 |
| HSA-MIR-5584-3P | 99.23 | 68.79 | 1351 |
| HSA-MIR-4426 | 99.17 | 66.74 | 1949 |
| HSA-MIR-485-5P | 99.10 | 64.78 | 1889 |
| HSA-MIR-6884-5P | 99.10 | 64.50 | 1987 |
| HSA-MIR-4720-3P | 98.50 | 68.88 | 988 |
| HSA-MIR-581 | 98.39 | 67.42 | 835 |
| HSA-MIR-4662B | 98.33 | 66.37 | 1163 |
| HSA-MIR-4647 | 98.30 | 66.41 | 1139 |
| HSA-MIR-1262 | 98.17 | 66.52 | 757 |
| HSA-MIR-4701-3P | 98.17 | 66.25 | 788 |
| HSA-MIR-6736-5P | 98.17 | 66.43 | 760 |
| HSA-MIR-3620-5P | 97.42 | 63.95 | 792 |
| HSA-MIR-10400-3P | 97.29 | 64.66 | 597 |
| HSA-MIR-4674 | 97.29 | 64.62 | 597 |
| HSA-MIR-27A-5P | 97.01 | 65.63 | 528 |
| HSA-MIR-1587 | 96.95 | 64.03 | 932 |
| HSA-MIR-664B-5P | 96.74 | 67.50 | 509 |
| HSA-MIR-2909 | 96.36 | 67.30 | 562 |
| HSA-MIR-4761-3P | 96.27 | 66.26 | 524 |
| HSA-MIR-4453 | 95.61 | 65.84 | 436 |
| HSA-MIR-4538 | 95.61 | 65.34 | 449 |
Literature-anchored findings (GeneRIF, showing 1)
- study reported a new type of AZFc deletion (gr/gr-DAZ2-DAZ4-CDY1b) and hypothesis that this new deletion is the result of 2 successive events favored by the unstable structure of AZFc region; also demonstrated that this deletion constitutes a relative high-risk factor for male infertility in Tunisian population (PMID:27457284)
Cross-species orthologs
12 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cdyl | ENSDARG00000038985 |
| mus_musculus | Cdyl | ENSMUSG00000059288 |
| rattus_norvegicus | AABR07039112.1 | ENSRNOG00000022855 |
| drosophila_melanogaster | CG14787 | FBGN0027793 |
| drosophila_melanogaster | CG8778 | FBGN0033761 |
| drosophila_melanogaster | Dci | FBGN0035169 |
| drosophila_melanogaster | HIPP1 | FBGN0037027 |
| drosophila_melanogaster | Srlp | FBGN0038049 |
| drosophila_melanogaster | CG5611 | FBGN0039531 |
| caenorhabditis_elegans | WBGENE00001152 | |
| caenorhabditis_elegans | WBGENE00001154 | |
| caenorhabditis_elegans | WBGENE00007130 |
Paralogs (13): ECHDC1 (ENSG00000093144), ECH1 (ENSG00000104823), ECHDC2 (ENSG00000121310), ECHS1 (ENSG00000127884), CDY2B (ENSG00000129873), ECHDC3 (ENSG00000134463), AUH (ENSG00000148090), CDYL (ENSG00000153046), CDYL2 (ENSG00000166446), ECI1 (ENSG00000167969), CDY1 (ENSG00000172288), CDY2A (ENSG00000182415), HIBCH (ENSG00000198130)
Protein
Protein identifiers
Testis-specific chromodomain protein Y 1 — Q9Y6F8 (reviewed: Q9Y6F8)
All UniProt accessions (1): Q9Y6F8
UniProt curated annotations — full annotation on UniProt →
Function. Has histone acetyltransferase activity, with a preference for histone H4.
Subunit / interactions. Interacts (via chromo domain) with histone H3K9me3.
Subcellular location. Nucleus.
Tissue specificity. Testis-specific. Detected in spermatids (at protein level).
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y6F8-1 | 1 | yes |
| Q9Y6F8-2 | 2 |
RefSeq proteins (2): NP_001003894, NP_001003895 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000953 | Chromo/chromo_shadow_dom | Domain |
| IPR001753 | Enoyl-CoA_hydra/iso | Domain |
| IPR014748 | Enoyl-CoA_hydra_C | Homologous_superfamily |
| IPR016197 | Chromo-like_dom_sf | Homologous_superfamily |
| IPR017984 | Chromo_dom_subgr | Domain |
| IPR023779 | Chromodomain_CS | Conserved_site |
| IPR023780 | Chromo_domain | Domain |
| IPR029045 | ClpP/crotonase-like_dom_sf | Homologous_superfamily |
| IPR051053 | ECH/Chromodomain_protein | Family |
Pfam: PF00378, PF00385
Catalyzed reactions (Rhea), 1 shown:
- L-lysyl-[protein] + acetyl-CoA = N(6)-acetyl-L-lysyl-[protein] + CoA + H(+) (RHEA:45948)
UniProt features (28 total): helix 13, strand 9, chain 1, domain 1, region of interest 1, turn 1, compositionally biased region 1, splice variant 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6V41 | X-RAY DIFFRACTION | 1.6 |
| 2FBM | X-RAY DIFFRACTION | 2.28 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y6F8-F1 | 70.79 | 0.49 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 46 (showing top):
GOBP_MALE_GAMETE_GENERATION, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_METABOLIC_PROCESS, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, GOBP_PROTEIN_ACYLATION, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_MODIFICATION_PROCESS, GOBP_REGULATION_OF_PROTEIN_MODIFICATION_PROCESS, GOMF_ACETYLTRANSFERASE_ACTIVITY, GOMF_ACYLTRANSFERASE_ACTIVITY, GOMF_N_ACYLTRANSFERASE_ACTIVITY, GOMF_TRANSCRIPTION_COREPRESSOR_ACTIVITY, GOMF_N_ACETYLTRANSFERASE_ACTIVITY, GOBP_REGULATION_OF_PROTEIN_METABOLIC_PROCESS, chrYq11, GOBP_NEGATIVE_REGULATION_OF_NUCLEOBASE_CONTAINING_COMPOUND_METABOLIC_PROCESS, GOMF_TRANSCRIPTION_COREGULATOR_ACTIVITY
GO Biological Process (4): spermatogenesis (GO:0007283), chromatin organization (GO:0006325), chromatin remodeling (GO:0006338), negative regulation of DNA-templated transcription (GO:0045892)
GO Molecular Function (7): transcription corepressor activity (GO:0003714), histone H3K27me3 reader activity (GO:0061628), protein-lysine-acetyltransferase activity (GO:0061733), histone H3K9me2/3 reader activity (GO:0062072), histone acetyltransferase activity (GO:0004402), transferase activity (GO:0016740), acyltransferase activity (GO:0016746)
GO Cellular Component (1): nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| histone H3 reader activity | 2 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| cellular component organization | 1 |
| chromatin organization | 1 |
| DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| transcription coregulator activity | 1 |
| negative regulation of DNA-templated transcription | 1 |
| protein N-acetyltransferase activity | 1 |
| protein-lysine-acetyltransferase activity | 1 |
| histone modifying activity | 1 |
| catalytic activity | 1 |
| transferase activity | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
2288 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CDY1B | BPY2 | O14599 | 964 |
| CDY1B | DAZ1 | Q9NQZ3 | 956 |
| CDY1B | DAZ2 | Q13117 | 943 |
| CDY1B | VCY | O14598 | 918 |
| CDY1B | PRY | O14603 | 916 |
| CDY1B | E7ERQ6 | E7ERQ6 | 916 |
| CDY1B | RBMY1A1 | P0DJD3 | 852 |
| CDY1B | USP9Y | O00507 | 789 |
| CDY1B | DDX3Y | O15523 | 765 |
| CDY1B | UTY | O14607 | 764 |
| CDY1B | TSPY1 | P09002 | 720 |
| CDY1B | RBMY1D | P0C7P1 | 717 |
| CDY1B | HSFY1 | Q96LI6 | 714 |
| CDY1B | KDM5D | Q9BY66 | 546 |
| CDY1B | RPS4Y2 | Q8TD47 | 529 |
IntAct
0 interactions, top by confidence:
BioGRID (7): CDY1 (Synthetic Growth Defect), CDY1 (Proximity Label-MS), CDY1 (Affinity Capture-MS), LIG1 (Protein-peptide), CDY1 (Affinity Capture-MS), VWA3A (Cross-Linking-MS (XL-MS)), CDY1B (Reconstituted Complex)
ESM2 similar proteins: A0A0B7P3V8, A4FUB7, A4H7G5, A4HVU6, A6NKG5, B4NSS9, B6EU02, F4I1N8, H2KZW3, O10318, O13329, P04586, P0C2J7, P18475, P34601, P47024, Q01577, Q05101, Q09178, Q09293, Q1L6Q1, Q3S4A7, Q4DCH3, Q4QFY1, Q4R6I1, Q52QI2, Q57X81, Q5RBK0, Q5RDX4, Q62120, Q66H30, Q6R2W3, Q7KLI1, Q7LHG5, Q8CDM1, Q8K259, Q8N157, Q90179, Q91829, Q99315
Diamond homologs: A0A0P0VUY4, G3V8T1, O60016, O95931, P05205, P23198, P29227, P30658, P45968, P45973, P60889, P83916, P83917, Q10103, Q13185, Q14781, Q3TYA6, Q5F3W5, Q5KQL9, Q5R6X7, Q61686, Q6AYK9, Q8N8U2, Q8VDS3, Q94F87, Q99549, Q9AXT8, Q9D5D8, Q9WTK2, Q9Y232, Q9Y6F7, Q9Y6F8, G5EDE2, G5EET5, O43463, O54864, O95503, Q2NL30, Q339W7, Q5RB81
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
1 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 0 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4526302 | GRCh38/hg38 Yq11.222-12(chrY:18851940-57212132)x0 | Pathogenic |
SpliceAI
12 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| Y:24046269:C:G | acceptor_gain | 0.3600 |
| Y:24047169:C:CT | donor_gain | 0.2700 |
| Y:24047170:C:CT | donor_gain | 0.2600 |
| Y:24047884:A:AC | donor_gain | 0.2500 |
| Y:24047885:C:CC | donor_gain | 0.2500 |
| Y:24047663:TCA:T | donor_gain | 0.2300 |
| Y:24047884:ACTG:A | donor_gain | 0.2300 |
| Y:24047885:CTGC:C | donor_gain | 0.2300 |
| Y:24046189:A:AC | donor_gain | 0.2100 |
| Y:24047168:A:AC | donor_gain | 0.2100 |
| Y:24047048:A:C | donor_gain | 0.2000 |
| Y:24047224:GCCAC:G | acceptor_gain | 0.2000 |
AlphaMissense
3584 scored. Top likely-pathogenic:
dbSNP variants (sampled 12 via entrez): RS113904488 (Y:24048302 T>C), RS1556277899 (Y:24045650 G>C), RS1556277909 (Y:24047308 G>A), RS1556277919 (Y:24047507 T>C), RS1556277927 (Y:24047772 G>A), RS2522026135 (Y:24044538 GAAAA>G,GA,GAA), RS2522026165 (Y:24045808 GT>G), RS2522026176 (Y:24046768 AT>A), RS2522026234 (Y:24048223 GT>G), RS2522026240 (Y:24048297 C>CGTTTT), RS2522026251 (Y:24048732 T>C), RS2522026256 (Y:24048740 T>C)
Disease associations
OMIM: gene `` | disease phenotypes:
GenCC curated gene-disease
Mondo (1): male infertility (MONDO:0005372)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007248 | Infertility, Male | C12.100.500.430; C12.100.750.700; C12.200.294.430 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3879864 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
13 potent at pChembl≥5 of 43 total, top 12 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.10 | Kd | 800 | nM | CHEMBL4442553 |
| 6.00 | Kd | 1000 | nM | CHEMBL1524534 |
| 5.82 | Kd | 1500 | nM | CHEMBL4444535 |
| 5.77 | Kd | 1700 | nM | CHEMBL4553597 |
| 5.57 | Kd | 2700 | nM | CHEMBL4569763 |
| 5.40 | Kd | 4000 | nM | CHEMBL4455971 |
| 5.36 | Kd | 4400 | nM | CHEMBL4541008 |
| 5.35 | Kd | 4500 | nM | CHEMBL4469115 |
| 5.34 | Kd | 4600 | nM | CHEMBL4513804 |
| 5.24 | Kd | 5800 | nM | CHEMBL4461125 |
| 5.20 | Kd | 6300 | nM | CHEMBL3939958 |
| 5.19 | Kd | 6500 | nM | CHEMBL4529457 |
PubChem BioAssay actives
26 with measured affinity, of 112 total; 12 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-naphthalen-1-yl-2-(2-oxo-1,3-benzoxazol-3-yl)acetamide | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 0.8000 | uM |
| N-(3-methoxyphenyl)-2-(2-oxo-1,3-benzoxazol-3-yl)acetamide | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 1.0000 | uM |
| 5-methoxy-3-(2-naphthalen-2-yl-2-oxoethyl)-1,3-benzoxazol-2-one | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 1.5000 | uM |
| 6-bromo-3-(2-naphthalen-2-yl-2-oxoethyl)-1,3-benzoxazol-2-one | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 1.7000 | uM |
| 3-[2-[4-(dimethylamino)phenyl]-2-oxoethyl]-5-methoxy-1,3-benzoxazol-2-one | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 2.7000 | uM |
| 2-(benzimidazol-1-yl)-1-(3-methoxyphenyl)ethanone | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 4.0000 | uM |
| 3-[2-(3,4-dimethoxyphenyl)-2-oxoethyl]-5-fluoro-1,3-benzoxazol-2-one | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 4.4000 | uM |
| 3-[2-[4-(diethylamino)piperidin-1-yl]-2-oxoethyl]-5-fluoro-1,3-benzoxazol-2-one | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 4.5000 | uM |
| 3-[2-(1H-indol-3-yl)-2-oxoethyl]-2-oxo-1,3-benzoxazole-5-carbonitrile | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 4.6000 | uM |
| 3-[2-(3-methoxyphenyl)-2-oxoethyl]-1,3-benzoxazol-2-one | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 5.8000 | uM |
| methyl (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(4-tert-butylbenzoyl)amino]-3-phenylpropanoyl]amino]propanoyl]amino]-4-methylpentanoyl]amino]-6-(diethylamino)hexanoyl]amino]-3-hydroxypropanoate | 1319527: Binding affinity to human N-terminal GST-tagged CDY1 chromodomain (1 to 101 residues) expressed in Escherichia coli Rosetta BL21(DE3)pLysS by ITC method | kd | 6.3000 | uM |
| 3-(2-naphthalen-1-yl-2-oxoethyl)-1,3-benzoxazol-2-one | 1565816: Binding affinity to recombinant human N-terminal GST-tagged CDY1 (1 to 65 residues) expressed in Escherichia coli BL2 by SPR analysis | kd | 6.5000 | uM |
CTD chemical–gene interactions
2 total (human), top 2 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| CGP 52608 | affects binding, increases reaction | 1 |
| Aflatoxin B1 | increases methylation | 1 |
ChEMBL screening assays
4 unique, capped per target: 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3858702 | Binding | Binding affinity to human N-terminal GST-tagged CDY1 chromodomain (1 to 101 residues) expressed in Escherichia coli Rosetta BL21(DE3)pLysS by ITC method | Structure-Activity Relationships and Kinetic Studies of Peptidic Antagonists of CBX Chromodomains. — J Med Chem |
Clinical trials (associated diseases)
125 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02202382 | PHASE4 | COMPLETED | Effects of Korean Red Ginseng on Male Infertility |
| NCT02204826 | PHASE4 | COMPLETED | Effects of Korean Red Ginseng on Semen Parameters in Male Infertility Patients: a Randomized, Placebo-controlled, Double-blind Clinical Study |
| NCT03802864 | PHASE4 | COMPLETED | Post-operative Pain Control of Testicular Sperm Extraction Using Liposomal Bupivacaine |
| NCT06100432 | PHASE4 | ACTIVE_NOT_RECRUITING | Effect of Eurycoma Longifolia (DLBS5055) and Multivitamins (Vitamin C+Vitamin E+ β-carotene) for Infertile Males |
| NCT07523022 | PHASE4 | ENROLLING_BY_INVITATION | Comparison of the Effect of Gonadotropin and Clomiphene Citrate Treatment on Sperm Parameters and the Outcome of Assisted Reproductive Procedures in Subfertile Men Based on the APHRODITE Groups |
| NCT00975117 | PHASE3 | COMPLETED | Spermotrend in the Treatment of Male Infertility |
| NCT01407432 | PHASE3 | COMPLETED | Impact of Folates in the Care of the Male Infertility |
| NCT01895816 | PHASE3 | COMPLETED | Herbal Tonic Fertile Supplement(ZO2C5) |
| NCT02605070 | PHASE3 | TERMINATED | Pilot Study on the Effects of FSH Treatment on the Epigenetic Characteristics of Spermatozoa in Infertile Patients With Severe Oligozoospermia |
| NCT07402759 | PHASE3 | ACTIVE_NOT_RECRUITING | Impact of tdrd9 Gene Mutations in the Therapeutic Response to L-carnitine in Oligoasthenozoospermic Men |
| NCT01880086 | PHASE2 | COMPLETED | Clomiphene Citrate for the Treatment of Low Testosterone Associated With Chronic Opioid Pain Medication Administration |
| NCT02061384 | PHASE2 | COMPLETED | RA-2 13-cis Retinoic Acid (Isotretinoin) |
| NCT02421887 | PHASE2 | COMPLETED | Males, Antioxidants, and Infertility Trial |
| NCT05200663 | PHASE2 | UNKNOWN | Efficacy Comparison of Tamoxifen and Tamoxifen With Antioxidants on Semen Quality of Male With Idiopathic Infertility |
| NCT05290558 | PHASE2 | ACTIVE_NOT_RECRUITING | The Therapeutic Effects of Bu Shen Yi Jing Pill on Semen Quality in Sub Fertile Males: a Randomized Controlled Trial |
| NCT06091969 | PHASE2 | NOT_YET_RECRUITING | Supplementation for Male Subfertility |
| NCT01595308 | PHASE1 | COMPLETED | A Pilot Study to Evaluate the Effect of Pomegranate Juice on Semen Parameters in Healthy Male Volunteers |
| NCT02122211 | PHASE1 | COMPLETED | Choline Dehydrogenase and Sperm Function: Effects of Betaine |
| NCT02575924 | PHASE1 | UNKNOWN | Influence of Culture Media on Clinical Outcomes in Poor Responders or Severe Male Infertility |
| NCT01304927 | PHASE2/PHASE3 | COMPLETED | Vitamin D Supplementation and Male Infertility: The CBG-study a Randomized Clinical Trial |
| NCT02349945 | PHASE2/PHASE3 | COMPLETED | FSH Receptor Polymorphism p.N680S and Efficacy of FSH Therapy |
| NCT05222841 | PHASE2/PHASE3 | COMPLETED | The Effectiveness of Spermotrend Food Supplement in the Treatment of Male Infertility |
| NCT05616598 | PHASE2/PHASE3 | COMPLETED | Effect of New Oral Treatment for Hepatitis C Virus on Seminal Parameters |
| NCT02025270 | PHASE1/PHASE2 | COMPLETED | MSCs For Treatment of Azoospermic Patients |
| NCT04541459 | EARLY_PHASE1 | UNKNOWN | Validation of New Devices Against Ambient Electromagnetic Radiation |
| NCT05792813 | EARLY_PHASE1 | UNKNOWN | Efficacy and Safety of Linggui Yangyuan Paste in Patients With Male Infertility |
| NCT06188936 | EARLY_PHASE1 | COMPLETED | Home Semen Analysis Tests As a Screening Tool for Fertility Patients |
| NCT00012480 | Not specified | COMPLETED | Effect of Environmental Exposures on the Egg Fertilizing Ability of Human Sperm |
| NCT00044369 | Not specified | COMPLETED | Role of the Toxic Metal Cadmium in the Mechanism Producing Infertility With a Varicocele |
| NCT00119925 | Not specified | UNKNOWN | ‘SPRING’-Study: Subfertility Guidelines: Patient Related Implementation in the Netherlands Among Gynaecologists |
| NCT00178516 | Not specified | COMPLETED | Vitamin E and Male Infertility |
| NCT00315029 | Not specified | COMPLETED | Patient-Centered Implementation Trial for Single Embryo Transfer |
| NCT00341120 | Not specified | COMPLETED | Genetic Causes of Male Infertility |
| NCT00481403 | Not specified | COMPLETED | Study of Sperm Molecular Factors Implicated in Male Fertility |
| NCT00548977 | Not specified | COMPLETED | Genetic Studies Spermatogenic Failure |
| NCT00596739 | Not specified | COMPLETED | A Study of the Pre- and Post-operative Semen Analyses and Reproductive Hormone Levels of Men Undergoing Weight-reduction Surgery |
| NCT00756561 | Not specified | COMPLETED | HOP-2A - Intratesticular Hormone Levels |
| NCT00961558 | Not specified | TERMINATED | Canadian Varicocelectomy Initiative (CVI): Effects on Male Fertility and Testicular Function of Varicocelectomy |
| NCT01075334 | Not specified | UNKNOWN | Is a Carnitine Based Food Supplement (PorimoreTM) for Infertile Men Superior to Folate and Zinc With Regard to Pregnancy Rates in Intrauterine Insemination Cycles? |
| NCT01178463 | Not specified | UNKNOWN | Spermatogonial Stem Cells in Azoospermic Patients: a Comparison Between Obstructive and Non-obstructive Azoospermia |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): male infertility