CEACAM16
geneOn this page
Also known as DFNA4B
Summary
CEACAM16 (CEA cell adhesion molecule 16, tectorial membrane component, HGNC:31948) is a protein-coding gene on chromosome 19q13.31-q13.32, encoding Cell adhesion molecule CEACAM16 (Q2WEN9). Required for proper hearing, plays a role in maintaining the integrity of the tectorial membrane.
The protein encoded by this gene is a secreted glycoprotein that in mouse interacts with tectorial membrane proteins in the inner ear. The encoded adhesion protein is found in cochlear outer hair cells and appears to be important for proper hearing over an extended frequency range. Defects in this gene likely are a cause of non-syndromic autosomal dominant hearing loss.
Source: NCBI Gene 388551 — RefSeq curated summary.
At a glance
- Gene–disease (curated): nonsyndromic genetic hearing loss (Strong, ClinGen) — +4 more curated relationships
- GWAS associations: 22
- Clinical variants (ClinVar): 294 total — 8 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 6
- MANE Select transcript:
NM_001039213
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:31948 |
| Approved symbol | CEACAM16 |
| Name | CEA cell adhesion molecule 16, tectorial membrane component |
| Location | 19q13.31-q13.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DFNA4B |
| Ensembl gene | ENSG00000213892 |
| Ensembl biotype | protein_coding |
| OMIM | 614591 |
| Entrez | 388551 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000405314, ENST00000587331
RefSeq mRNA: 1 — MANE Select: NM_001039213
NM_001039213
CCDS: CCDS54278
Canonical transcript exons
ENST00000587331 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001526131 | 44705590 | 44705868 |
| ENSE00001526132 | 44704018 | 44704296 |
| ENSE00001526134 | 44703349 | 44703693 |
| ENSE00002705110 | 44707861 | 44708187 |
| ENSE00002876161 | 44701361 | 44701493 |
| ENSE00002925332 | 44699151 | 44699260 |
| ENSE00003841302 | 44710496 | 44710718 |
Expression profiles
Bgee: expression breadth broad, 26 present calls, max score 53.41.
Top tissues by expression
110 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| colonic epithelium | UBERON:0000397 | 53.41 | gold quality |
| body of pancreas | UBERON:0001150 | 51.06 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 50.35 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 50.12 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 48.96 | gold quality |
| liver | UBERON:0002107 | 48.88 | silver quality |
| left adrenal gland | UBERON:0001234 | 48.66 | gold quality |
| right lobe of liver | UBERON:0001114 | 47.46 | gold quality |
| right adrenal gland | UBERON:0001233 | 47.39 | gold quality |
| adrenal gland | UBERON:0002369 | 46.12 | gold quality |
| tonsil | UBERON:0002372 | 45.94 | gold quality |
| pancreas | UBERON:0001264 | 44.49 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 43.41 | silver quality |
| bone marrow cell | CL:0002092 | 38.24 | gold quality |
| muscle of leg | UBERON:0001383 | 37.93 | gold quality |
| pituitary gland | UBERON:0000007 | 37.90 | gold quality |
| transverse colon | UBERON:0001157 | 37.49 | silver quality |
| gastrocnemius | UBERON:0001388 | 37.17 | gold quality |
| sural nerve | UBERON:0015488 | 36.83 | gold quality |
| rectum | UBERON:0001052 | 36.48 | silver quality |
| ventricular zone | UBERON:0003053 | 36.48 | gold quality |
| cortical plate | UBERON:0005343 | 36.47 | gold quality |
| esophagus mucosa | UBERON:0002469 | 36.33 | silver quality |
| apex of heart | UBERON:0002098 | 36.15 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 35.60 | gold quality |
| granulocyte | CL:0000094 | 35.57 | gold quality |
| ganglionic eminence | UBERON:0004023 | 35.49 | gold quality |
| adenohypophysis | UBERON:0002196 | 35.24 | silver quality |
| gall bladder | UBERON:0002110 | 34.46 | silver quality |
| mucosa of stomach | UBERON:0001199 | 33.80 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.62 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
6 targeting CEACAM16, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-942-5P | 99.41 | 68.40 | 1977 |
Literature-anchored findings (GeneRIF, showing 5)
- data identify CEACAM16 as an alpha-tectorin-interacting protein that concentrates at the point of attachment of the TM to the stereocilia and, when mutated, results in ADNSHL at the DFNA4 locus (PMID:21368133)
- CEACAM16 can probably form higher order structures with other tectorial membrane proteins such as alpha-tectorin and beta-tectorin and influences the physical properties of the tectorial membrane (PMID:22544735)
- Data indicate that a heterozygous missense mutation, c.505G>A (p.G169R) in exon 3 of the CEACAM16 gene (carcinoembryonic antigen-related cell adhesion molecule 16) was identified in autosomal dominant nonsyndromic hearing loss family. (PMID:25589040)
- Results confirm that CEACAM6 promoted cell proliferation mediated by cyclin D1/CDK4. (PMID:26497080)
- [Identification of a novel mutation of CEACAM16 gene in a Chinese family with autosomal dominant nonsyndromic hearing loss]. (PMID:33040498)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Ceacam16 | ENSMUSG00000014686 |
| rattus_norvegicus | Ceacam16 | ENSRNOG00000031391 |
Paralogs (24): CEACAM21 (ENSG00000007129), CEACAM7 (ENSG00000007306), CEACAM1 (ENSG00000079385), CEACAM6 (ENSG00000086548), CEACAM4 (ENSG00000105352), CEACAM5 (ENSG00000105388), PSG8 (ENSG00000124467), CEACAM8 (ENSG00000124469), HEPACAM (ENSG00000165478), PSG6 (ENSG00000170848), CEACAM3 (ENSG00000170956), PSG9 (ENSG00000183668), CEACAM19 (ENSG00000186567), HEPACAM2 (ENSG00000188175), PSG5 (ENSG00000204941), CEACAM18 (ENSG00000213822), VSTM5 (ENSG00000214376), PSG3 (ENSG00000221826), PSG7 (ENSG00000221878), PSG1 (ENSG00000231924), PSG2 (ENSG00000242221), PSG11 (ENSG00000243130), PSG4 (ENSG00000243137), CEACAM20 (ENSG00000273777)
Protein
Protein identifiers
Cell adhesion molecule CEACAM16 — Q2WEN9 (reviewed: Q2WEN9)
Alternative names: Carcinoembryonic antigen-like 2, Carcinoembryonic antigen-related cell adhesion molecule 16
All UniProt accessions (1): Q2WEN9
UniProt curated annotations — full annotation on UniProt →
Function. Required for proper hearing, plays a role in maintaining the integrity of the tectorial membrane.
Subunit / interactions. Homooligomer; can for homodimers and homotetramers. Interacts with TECTA and TECTB.
Subcellular location. Secreted.
Disease relevance. Deafness, autosomal dominant, 4B (DFNA4B) [MIM:614614] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. The disease is caused by variants affecting the gene represented in this entry. Deafness, autosomal recessive, 113 (DFNB113) [MIM:618410] A form of non-syndromic, sensorineural deafness characterized by postlingual progressive hearing impairment. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the immunoglobulin superfamily. CEA family.
RefSeq proteins (1): NP_001034302* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003598 | Ig_sub2 | Domain |
| IPR003599 | Ig_sub | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR013106 | Ig_V-set | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR050831 | CEA_cell_adhesion | Family |
Pfam: PF07686, PF13895, PF13927
UniProt features (11 total): glycosylation site 3, sequence variant 2, domain 2, disulfide bond 2, signal peptide 1, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q2WEN9-F1 | 90.50 | 0.80 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (2): 153–201, 252–293
Glycosylation sites (3): 36, 216, 394
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 18 (showing top):
GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, GOBP_SENSORY_PERCEPTION, GOCC_NEURON_PROJECTION, GOCC_STEREOCILIUM_BUNDLE, GOCC_CLUSTER_OF_ACTIN_BASED_CELL_PROJECTIONS, GOCC_ACTIN_BASED_CELL_PROJECTION, PEDRIOLI_MIR31_TARGETS_UP, GOCC_STEREOCILIUM_TIP, GSE13547_WT_VS_ZFX_KO_BCELL_ANTI_IGM_STIM_12H_UP, SUPT16H_TARGET_GENES, HP_VISUAL_IMPAIRMENT, HP_ABNORMAL_VESTIBULAR_FUNCTION, HP_JUVENILE_ONSET, HP_FUNCTIONAL_ABNORMALITY_OF_THE_INNER_EAR, HP_ABNORMALITY_OF_VISION
GO Biological Process (1): sensory perception of sound (GO:0007605)
GO Molecular Function (1): identical protein binding (GO:0042802)
GO Cellular Component (3): obsolete extracellular space (GO:0005615), stereocilium tip (GO:0032426), extracellular region (GO:0005576)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| sensory perception of mechanical stimulus | 1 |
| protein binding | 1 |
| stereocilium | 1 |
Protein interactions and networks
STRING
1008 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CEACAM16 | TECTA | O75443 | 902 |
| CEACAM16 | TECTB | Q96PL2 | 858 |
| CEACAM16 | OTOG | Q6ZRI0 | 753 |
| CEACAM16 | OTOGL | Q3ZCN5 | 742 |
| CEACAM16 | STRC | Q7RTU9 | 625 |
| CEACAM16 | TSPEAR | Q8WU66 | 614 |
| CEACAM16 | TPRN | Q4KMQ1 | 611 |
| CEACAM16 | SMPX | Q9UHP9 | 602 |
| CEACAM16 | MYH14 | Q7Z406 | 585 |
| CEACAM16 | LOXHD1 | Q8IVV2 | 530 |
| CEACAM16 | OTOA | Q7RTW8 | 510 |
| CEACAM16 | GPSM2 | P81274 | 507 |
| CEACAM16 | GRXCR1 | A8MXD5 | 497 |
| CEACAM16 | CDH23 | Q9H251 | 491 |
| CEACAM16 | SLC26A5 | P58743 | 487 |
IntAct
2 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CEACAM16 | SBNO1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (13): USO1 (Affinity Capture-MS), EEA1 (Affinity Capture-MS), ODF2 (Affinity Capture-MS), OXSR1 (Affinity Capture-MS), SNX5 (Affinity Capture-MS), SBNO1 (Affinity Capture-MS), CBL (Affinity Capture-MS), GCA (Affinity Capture-MS), PSMG2 (Affinity Capture-MS), KIAA1468 (Affinity Capture-MS), DST (Affinity Capture-MS), MPP1 (Affinity Capture-MS), NSD1 (Affinity Capture-MS)
ESM2 similar proteins: A6NMB1, D3ZQE1, E9QA28, G1T7E7, G1TR84, O75054, O75144, P05362, P07722, P09564, P11364, P15151, P16573, P20916, P20917, P32506, P32942, P33729, Q08ET2, Q1WIM1, Q1WIM3, Q28110, Q28125, Q28730, Q28806, Q2WEN9, Q5DRQ8, Q5NKU6, Q5NKV4, Q5NKV6, Q5NKV9, Q5R996, Q60625, Q64JA4, Q6BAA4, Q7TSU7, Q8N126, Q8NFZ8, Q8R464, Q8VBT3
Diamond homologs: A0A0B4J1L0, D3ZQE1, E9QA28, O75871, P06731, P11464, P11465, P13688, P16573, P31809, P31997, P40198, P40199, Q00887, Q00888, Q00889, Q13046, Q14002, Q15238, Q16557, Q2WEN9, Q3KPI0, Q3UKK2, Q61400, Q63111, Q810J1, Q925P2, Q9D2Z1, Q9UQ72, Q9UQ74, A1L1A6, B2RTN2, Q0E9H9, Q6UY09, A8MTB9, A0A140LHF2, Q8BFR2, Q8N475, Q9PWR4, P35329
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
294 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 8 |
| Likely pathogenic | 6 |
| Uncertain significance | 155 |
| Likely benign | 61 |
| Benign | 26 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1185559 | NM_001039213.4(CEACAM16):c.763A>G (p.Arg255Gly) | Pathogenic |
| 2138305 | NM_001039213.4(CEACAM16):c.859del (p.Gln287fs) | Pathogenic |
| 235136 | NM_001039213.4(CEACAM16):c.505G>A (p.Gly169Arg) | Pathogenic |
| 2856290 | NM_001039213.4(CEACAM16):c.727_730dup (p.Phe244Ter) | Pathogenic |
| 31238 | NM_001039213.4(CEACAM16):c.418A>C (p.Thr140Pro) | Pathogenic |
| 3340146 | NM_001039213.4(CEACAM16):c.436C>T (p.Arg146Ter) | Pathogenic |
| 3717767 | NM_001039213.4(CEACAM16):c.325C>T (p.Gln109Ter) | Pathogenic |
| 626322 | NM_001039213.4(CEACAM16):c.662-1G>C | Pathogenic |
| 1180770 | NM_001039213.4(CEACAM16):c.459C>A (p.Cys153Ter) | Likely pathogenic |
| 228513 | NM_001039213.4(CEACAM16):c.1186A>G (p.Thr396Ala) | Likely pathogenic |
| 3765552 | NM_001039213.4(CEACAM16):c.703dup (p.Arg235fs) | Likely pathogenic |
| 3779505 | NM_001039213.4(CEACAM16):c.1203C>A (p.Tyr401Ter) | Likely pathogenic |
| 4077182 | NM_001039213.4(CEACAM16):c.380A>G (p.His127Arg) | Likely pathogenic |
| 626323 | NM_001039213.4(CEACAM16):c.37G>T (p.Ala13Ser) | Likely pathogenic |
SpliceAI
1238 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:44701491:GTG:G | donor_gain | 1.0000 |
| 19:44703348:GCCAC:G | acceptor_gain | 1.0000 |
| 19:44705866:CTGGT:C | donor_loss | 1.0000 |
| 19:44705869:GTGAG:G | donor_loss | 1.0000 |
| 19:44705870:TGAGT:T | donor_loss | 1.0000 |
| 19:44707857:CCA:C | acceptor_loss | 1.0000 |
| 19:44707858:CA:C | acceptor_loss | 1.0000 |
| 19:44707859:A:AG | acceptor_gain | 1.0000 |
| 19:44707860:G:GT | acceptor_gain | 1.0000 |
| 19:44707860:GC:G | acceptor_gain | 1.0000 |
| 19:44707860:GCT:G | acceptor_gain | 1.0000 |
| 19:44708166:G:GT | donor_gain | 1.0000 |
| 19:44708188:G:GG | donor_gain | 1.0000 |
| 19:44703347:A:AG | acceptor_gain | 0.9900 |
| 19:44703348:G:GA | acceptor_gain | 0.9900 |
| 19:44703348:GCC:G | acceptor_gain | 0.9900 |
| 19:44703650:G:GT | donor_gain | 0.9900 |
| 19:44704013:CACA:C | acceptor_loss | 0.9900 |
| 19:44704015:CA:C | acceptor_loss | 0.9900 |
| 19:44704016:A:AC | acceptor_loss | 0.9900 |
| 19:44704016:A:AG | acceptor_gain | 0.9900 |
| 19:44704017:G:GG | acceptor_gain | 0.9900 |
| 19:44704017:G:GT | acceptor_loss | 0.9900 |
| 19:44704017:GA:G | acceptor_gain | 0.9900 |
| 19:44704292:GTACT:G | donor_gain | 0.9900 |
| 19:44704297:G:GG | donor_gain | 0.9900 |
| 19:44705588:A:AG | acceptor_gain | 0.9900 |
| 19:44705588:AGTT:A | acceptor_gain | 0.9900 |
| 19:44705589:G:GG | acceptor_gain | 0.9900 |
| 19:44705589:GTTG:G | acceptor_gain | 0.9900 |
AlphaMissense
2707 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:44705720:G:C | W264C | 0.998 |
| 19:44705720:G:T | W264C | 0.998 |
| 19:44705799:T:G | Y291D | 0.998 |
| 19:44707968:T:A | W350R | 0.998 |
| 19:44707968:T:C | W350R | 0.998 |
| 19:44704127:G:C | W164C | 0.997 |
| 19:44704127:G:T | W164C | 0.997 |
| 19:44704230:T:G | Y199D | 0.997 |
| 19:44705805:T:A | C293S | 0.997 |
| 19:44705806:G:C | C293S | 0.997 |
| 19:44705819:C:A | N297K | 0.997 |
| 19:44705819:C:G | N297K | 0.997 |
| 19:44708121:T:G | Y401D | 0.997 |
| 19:44704125:T:A | W164R | 0.996 |
| 19:44704125:T:C | W164R | 0.996 |
| 19:44704236:T:A | C201S | 0.996 |
| 19:44704237:G:C | C201S | 0.996 |
| 19:44705682:T:A | C252S | 0.996 |
| 19:44705682:T:C | C252R | 0.996 |
| 19:44705683:G:C | C252S | 0.996 |
| 19:44705718:T:A | W264R | 0.996 |
| 19:44705718:T:C | W264R | 0.996 |
| 19:44705805:T:C | C293R | 0.996 |
| 19:44707970:G:C | W350C | 0.996 |
| 19:44707970:G:T | W350C | 0.996 |
| 19:44708083:T:C | L388P | 0.996 |
| 19:44708128:T:C | L403P | 0.996 |
| 19:44705684:C:G | C252W | 0.995 |
| 19:44705806:G:A | C293Y | 0.995 |
| 19:44705807:T:G | C293W | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1001187170 (19:44706303 C>T), RS1001228718 (19:44703162 C>T), RS1001366175 (19:44700928 C>T), RS1001617101 (19:44706500 T>A), RS1002052350 (19:44702523 G>C), RS1002181839 (19:44707715 G>A,C,T), RS1002302599 (19:44697399 C>T), RS1002428548 (19:44702198 C>A), RS1002615072 (19:44704458 C>T), RS1002695261 (19:44699893 T>C), RS1002728018 (19:44700147 A>G), RS1002829606 (19:44699530 C>A,T), RS1002885873 (19:44705239 A>G), RS1002933976 (19:44711044 A>T), RS1002990979 (19:44701840 C>T)
Disease associations
OMIM: gene MIM:614591 | disease phenotypes: MIM:614614, MIM:618410, MIM:128600, MIM:220290, MIM:607197
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal dominant nonsyndromic hearing loss 4B | Strong | Autosomal dominant |
| hearing loss, autosomal recessive 113 | Strong | Autosomal recessive |
| nonsyndromic genetic hearing loss | Moderate | Autosomal dominant |
| autosomal dominant nonsyndromic hearing loss | Supportive | Autosomal dominant |
| hearing loss, autosomal recessive | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| nonsyndromic genetic hearing loss | Strong | AR |
| nonsyndromic genetic hearing loss | Moderate | AD |
Mondo (7): autosomal dominant nonsyndromic hearing loss 4B (MONDO:0013823), hearing loss disorder (MONDO:0005365), hearing loss, autosomal recessive 113 (MONDO:0032732), ear malformation (MONDO:0007500), nonsyndromic genetic hearing loss (MONDO:0019497), hearing loss, autosomal recessive (MONDO:0019588), autosomal dominant nonsyndromic hearing loss (MONDO:0019587)
Orphanet (4): Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635), Rare genetic deafness (Orphanet:96210), Rare non-syndromic genetic deafness (Orphanet:87884), Rare autosomal recessive non-syndromic sensorineural deafness type DFNB (Orphanet:90636)
HPO phenotypes
6 total (6 of 6 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000505 | Visual impairment |
| HP:0001751 | Abnormal vestibular function |
| HP:0003621 | Juvenile onset |
GWAS associations
22 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001947_2 | Alzheimer’s disease (late onset) | 5.000000e-39 |
| GCST007827_17 | Alzheimer’s disease or HDL levels (pleiotropy) | 3.000000e-12 |
| GCST007827_5 | Alzheimer’s disease or HDL levels (pleiotropy) | 7.000000e-74 |
| GCST007827_6 | Alzheimer’s disease or HDL levels (pleiotropy) | 7.000000e-54 |
| GCST007827_8 | Alzheimer’s disease or HDL levels (pleiotropy) | 3.000000e-36 |
| GCST008075_187 | HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) | 5.000000e-09 |
| GCST008075_39 | HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) | 4.000000e-16 |
| GCST008077_5 | LDL cholesterol levels | 2.000000e-49 |
| GCST008077_58 | LDL cholesterol levels | 3.000000e-14 |
| GCST008078_136 | LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) | 2.000000e-177 |
| GCST008078_53 | LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) | 1.000000e-83 |
| GCST008079_102 | LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) | 5.000000e-213 |
| GCST008079_31 | LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) | 2.000000e-273 |
| GCST008084_205 | HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) | 2.000000e-10 |
| GCST008084_5 | HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) | 6.000000e-16 |
| GCST008085_95 | HDL cholesterol levels in current drinkers | 1.000000e-07 |
| GCST008086_114 | LDL cholesterol levels in current drinkers | 8.000000e-89 |
| GCST008086_14 | LDL cholesterol levels in current drinkers | 8.000000e-35 |
| GCST009496_17 | Alzheimer’s disease (onset between ages 58 and 79) | 1.000000e-10 |
| GCST010243_120 | Apolipoprotein B levels | 1.000000e-11 |
| GCST010243_48 | Apolipoprotein B levels | 2.000000e-15 |
| GCST010245_207 | LDL cholesterol levels | 0.000000e+00 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0004329 | alcohol drinking |
| EFO:0004615 | apolipoprotein B measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| C564609 | Deafness, Autosomal Recessive (supp.) | |
| C580334 | Nonsyndromic Deafness (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
7 total (human), top 7 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00582946 | PHASE1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | PHASE1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | PHASE1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | PHASE1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | PHASE1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | PHASE1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT02259595 | PHASE1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT04041440 | PHASE1 | COMPLETED | Speech Recognition Training in Children With Hearing Loss |
| NCT07218913 | PHASE1 | RECRUITING | Testing the Addition of Pedmark to Cisplatin Chemotherapy for Reducing Drug-Induced Ear Damage in Men With Stage II-III Metastatic Testicular Germ Cell Tumors |
| NCT01802190 | Not specified | TERMINATED | Prevalence of POU4F3 and SLC17A8 Mutations |
| NCT00486577 | PHASE2/PHASE3 | COMPLETED | Chronic Electrical Stimulation of the Auditory Cortex for Intractable Tinnitus |
| NCT00789061 | PHASE2/PHASE3 | UNKNOWN | Applying Proton Pump Inhibitor to Prevent and Treat Acute Fluctuating Hearing Loss in Patients With SLC26A4 Mutation |
| NCT01423409 | PHASE2/PHASE3 | COMPLETED | Multicenter Trial Assessing an Innovative VAS of Pain Among Deaf People |
| NCT05786378 | PHASE2/PHASE3 | UNKNOWN | Assessment of The Efficacy of Intratympanic Platelet Rich Plasma for Treatment of Sensorineural Hearing Loss. |
| NCT01108601 | PHASE1/PHASE2 | UNKNOWN | Transtympanic Ringer’s Lactate for the Prevention of Cisplatin Ototoxicity |
| NCT01621256 | PHASE1/PHASE2 | COMPLETED | Efficacy, Safety, and Tolerability of Ancrod in Patients With Sudden Hearing Loss |
| NCT06370351 | PHASE1/PHASE2 | RECRUITING | A Phase I/II Clinical Trial with SENS-501 in Children Suffering from Severe to Profound Hearing Loss Due to Otoferlin (OTOF) Mutations |
| NCT06545175 | PHASE1/PHASE2 | RECRUITING | Intracochlear Application of VSF1.01 for the Reduction of Cochlear Implant Surgery Related Trauma |
| NCT07304024 | PHASE1/PHASE2 | RECRUITING | A Treatment for a Form of Age-Related Central Auditory Processing Disorder Consisting of Clemastine Fumarate Plus Engineered Sound |
Related Atlas pages
- Associated diseases: nonsyndromic genetic hearing loss, autosomal dominant nonsyndromic hearing loss 4B, hearing loss, autosomal recessive 113, autosomal dominant nonsyndromic hearing loss, hearing loss, autosomal recessive
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant nonsyndromic hearing loss, autosomal dominant nonsyndromic hearing loss 4B, ear malformation, hearing loss, autosomal recessive, hearing loss, autosomal recessive 113, nonsyndromic genetic hearing loss