CECR3

Summary

CECR3 (cat eye syndrome chromosome region, candidate 3, HGNC:1841) is a long non-coding RNA gene on chromosome 22q11.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:1841
Approved symbol	CECR3
Name	cat eye syndrome chromosome region, candidate 3
Location	22q11.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241832
Ensembl biotype	lncRNA
Entrez	27442
RNAcentral	URS000075CE85 — lncRNA, 1915 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000428828, ENST00000743710

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000428828 — 3 exons

Exon	Start	End
ENSE00001700428	17260790	17261045
ENSE00001744810	17256859	17258306
ENSE00001784478	17266523	17266733

Expression profiles

Bgee: expression breadth broad, 20 present calls, max score 65.24.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0764 / max 19.5817, expressed in 36 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
193084	0.0764	36

Top tissues by expression

167 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	65.24	silver quality
muscle of leg	UBERON:0001383	47.09	silver quality
islet of Langerhans	UBERON:0000006	46.85	gold quality
gastrocnemius	UBERON:0001388	45.48	silver quality
upper leg skin	UBERON:0004262	44.20	silver quality
pancreas	UBERON:0001264	43.90	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
tonsil	UBERON:0002372	43.27	gold quality
body of pancreas	UBERON:0001150	43.10	silver quality
lymph node	UBERON:0000029	42.89	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
adult mammalian kidney	UBERON:0000082	42.25	gold quality
kidney	UBERON:0002113	42.23	silver quality
right uterine tube	UBERON:0001302	42.19	silver quality
skeletal muscle tissue	UBERON:0001134	42.17	gold quality
blood	UBERON:0000178	42.04	gold quality
heart left ventricle	UBERON:0002084	41.73	gold quality
rectum	UBERON:0001052	41.54	silver quality
vastus lateralis	UBERON:0001379	41.41	gold quality
dorsal root ganglion	UBERON:0000044	41.37	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
prefrontal cortex	UBERON:0000451	41.35	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
fallopian tube	UBERON:0003889	41.23	silver quality
cortex of kidney	UBERON:0001225	41.17	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
thyroid gland	UBERON:0002046	41.09	gold quality
cardiac ventricle	UBERON:0002082	41.05	gold quality
mucosa of paranasal sinus	UBERON:0005030	40.98	gold quality
placenta	UBERON:0001987	40.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.