CELF2-DT

Summary

CELF2-DT (CELF2 divergent transript, HGNC:54157) is a long non-coding RNA gene on chromosome 10p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54157
Approved symbol	CELF2-DT
Name	CELF2 divergent transript
Location	10p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000270111
Ensembl biotype	lncRNA
Entrez	101928322
RNAcentral	URS00003D754F — lncRNA, 505 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000455871, ENST00000602311, ENST00000634462, ENST00000653741, ENST00000661560, ENST00000664907, ENST00000665201, ENST00000668678, ENST00000670890, ENST00000716844, ENST00000716845, ENST00000716846, ENST00000716847, ENST00000716848, ENST00000716849, ENST00000738338, ENST00000738339, ENST00000738340, ENST00000738341, ENST00000738342, ENST00000738343, ENST00000738344, ENST00000738345, ENST00000738346

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455871 — 2 exons

Exon	Start	End
ENSE00004073476	10364947	10365249
ENSE00004073480	10366223	10366502

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 77.18.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1867 / max 20.9905, expressed in 60 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
108227	0.1060	48
108228	0.0807	45

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
prefrontal cortex	UBERON:0000451	77.18	gold quality
putamen	UBERON:0001874	76.72	gold quality
cortical plate	UBERON:0005343	75.96	gold quality
superior frontal gyrus	UBERON:0002661	75.92	gold quality
frontal cortex	UBERON:0001870	75.86	gold quality
nucleus accumbens	UBERON:0001882	75.41	gold quality
caudate nucleus	UBERON:0001873	75.14	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	75.09	gold quality
anterior cingulate cortex	UBERON:0009835	74.69	gold quality
Brodmann (1909) area 9	UBERON:0013540	74.51	gold quality
colonic epithelium	UBERON:0000397	74.34	silver quality
cerebral cortex	UBERON:0000956	74.08	gold quality
right frontal lobe	UBERON:0002810	73.75	gold quality
primary visual cortex	UBERON:0002436	73.36	gold quality
brain	UBERON:0000955	69.13	gold quality
temporal lobe	UBERON:0001871	67.72	gold quality
amygdala	UBERON:0001876	67.60	gold quality
Ammon’s horn	UBERON:0001954	67.34	gold quality
ventricular zone	UBERON:0003053	65.58	gold quality
bone marrow cell	CL:0002092	65.49	silver quality
ganglionic eminence	UBERON:0004023	65.06	gold quality
bone marrow	UBERON:0002371	59.83	gold quality
substantia nigra	UBERON:0002038	58.31	gold quality
lower esophagus mucosa	UBERON:0035834	58.00	gold quality
muscle tissue	UBERON:0002385	57.91	gold quality
urinary bladder	UBERON:0001255	57.49	gold quality
leukocyte	CL:0000738	56.33	gold quality
corpus callosum	UBERON:0002336	56.10	gold quality
monocyte	CL:0000576	55.59	gold quality
multicellular organism	UBERON:0000468	54.84	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.