CELF3
gene geneOn this page
Also known as CAGH4BRUNOL1ERDA4MGC57297
Summary
CELF3 (CUGBP Elav-like family member 3, HGNC:11967) is a protein-coding gene on chromosome 1q21.3, encoding CUGBP Elav-like family member 3 (Q5SZQ8). RNA-binding protein involved in the regulation of pre-mRNA alternative splicing.
Members of the CELF/BRUNOL protein family contain two N-terminal RNA recognition motif (RRM) domains, one C-terminal RRM domain, and a divergent segment of 160-230 aa between the second and third RRM domains. Members of this protein family regulate pre-mRNA alternative splicing and may also be involved in mRNA editing, and translation. Multiple alternatively spliced transcript variants encoding different isoforms have been identified in this gene.
Source: NCBI Gene 11189 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 50 total
- MANE Select transcript:
NM_007185
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11967 |
| Approved symbol | CELF3 |
| Name | CUGBP Elav-like family member 3 |
| Location | 1q21.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CAGH4, BRUNOL1, ERDA4, MGC57297 |
| Ensembl gene | ENSG00000159409 |
| Ensembl biotype | protein_coding |
| OMIM | 612678 |
| Entrez | 11189 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 3 protein_coding, 3 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000290583, ENST00000290585, ENST00000419910, ENST00000420342, ENST00000470688, ENST00000478829, ENST00000479893
RefSeq mRNA: 5 — MANE Select: NM_007185
NM_001172648, NM_001172649, NM_001291106, NM_001291107, NM_007185
CCDS: CCDS1002, CCDS53367
Canonical transcript exons
ENST00000290583 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001148654 | 151707145 | 151707294 |
| ENSE00002276558 | 151715876 | 151716803 |
| ENSE00003487160 | 151707792 | 151707935 |
| ENSE00003499250 | 151708998 | 151709077 |
| ENSE00003525296 | 151714594 | 151714676 |
| ENSE00003527202 | 151709743 | 151709791 |
| ENSE00003530989 | 151707507 | 151707648 |
| ENSE00003541137 | 151706669 | 151706734 |
| ENSE00003579790 | 151706224 | 151706361 |
| ENSE00003600557 | 151705031 | 151705168 |
| ENSE00003632602 | 151709220 | 151709348 |
| ENSE00003675613 | 151705822 | 151705965 |
| ENSE00003893777 | 151700058 | 151703448 |
Expression profiles
Bgee: expression breadth ubiquitous, 177 present calls, max score 98.68.
FANTOM5 (CAGE): breadth broad, TPM avg 4.9349 / max 491.5363, expressed in 250 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 14455 | 3.4130 | 235 |
| 14454 | 1.4197 | 190 |
| 14453 | 0.0387 | 21 |
| 14450 | 0.0302 | 16 |
| 14451 | 0.0234 | 9 |
| 14452 | 0.0099 | 3 |
Top tissues by expression
267 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 98.68 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 97.82 | gold quality |
| ganglionic eminence | UBERON:0004023 | 97.68 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.40 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.16 | gold quality |
| cerebellum | UBERON:0002037 | 95.86 | gold quality |
| right frontal lobe | UBERON:0002810 | 95.68 | gold quality |
| pituitary gland | UBERON:0000007 | 95.32 | gold quality |
| nucleus accumbens | UBERON:0001882 | 95.26 | gold quality |
| adenohypophysis | UBERON:0002196 | 94.21 | gold quality |
| cingulate cortex | UBERON:0003027 | 94.16 | gold quality |
| amygdala | UBERON:0001876 | 94.11 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 94.00 | gold quality |
| type B pancreatic cell | CL:0000169 | 93.90 | gold quality |
| prefrontal cortex | UBERON:0000451 | 93.63 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 93.62 | gold quality |
| putamen | UBERON:0001874 | 93.27 | gold quality |
| caudate nucleus | UBERON:0001873 | 92.87 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 92.68 | gold quality |
| gluteal muscle | UBERON:0002000 | 92.31 | gold quality |
| neocortex | UBERON:0001950 | 92.29 | gold quality |
| triceps brachii | UBERON:0001509 | 92.14 | gold quality |
| frontal cortex | UBERON:0001870 | 92.12 | gold quality |
| forebrain | UBERON:0001890 | 91.73 | gold quality |
| olfactory bulb | UBERON:0002264 | 91.72 | gold quality |
| telencephalon | UBERON:0001893 | 91.65 | gold quality |
| brain | UBERON:0000955 | 91.63 | gold quality |
| cerebral cortex | UBERON:0000956 | 91.62 | gold quality |
| temporal lobe | UBERON:0001871 | 91.36 | gold quality |
| inferior olivary complex | UBERON:0002127 | 91.01 | silver quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-93593 | yes | 167.29 |
| E-GEOD-137537 | yes | 14.08 |
| E-ANND-3 | no | 1.45 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
151 targeting CELF3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
Literature-anchored findings (GeneRIF, showing 2)
- Gomafu indirectly modulates the function of the splicing factors SF1 and Celf3 by sequestering these proteins into separate nuclear bodies. (PMID:25145264)
- CELF3 expression is associated with colorectal cancer metastasis. (PMID:30132996)
Cross-species orthologs
10 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | celf3b | ENSDARG00000006983 |
| danio_rerio | celf3a | ENSDARG00000034668 |
| mus_musculus | Celf3 | ENSMUSG00000028137 |
| rattus_norvegicus | Celf3 | ENSRNOG00000020875 |
| drosophila_melanogaster | bru1 | FBGN0000114 |
| drosophila_melanogaster | Pof | FBGN0035047 |
| drosophila_melanogaster | bru2 | FBGN0262475 |
| caenorhabditis_elegans | WBGENE00017135 | |
| caenorhabditis_elegans | WBGENE00017140 | |
| caenorhabditis_elegans | WBGENE00020354 |
Paralogs (6): CELF2 (ENSG00000048740), CELF4 (ENSG00000101489), RBM28 (ENSG00000106344), CELF6 (ENSG00000140488), CELF1 (ENSG00000149187), CELF5 (ENSG00000161082)
Protein
Protein identifiers
CUGBP Elav-like family member 3 — Q5SZQ8 (reviewed: Q5SZQ8)
Alternative names: Bruno-like protein 1, CAG repeat protein 4, CUG-BP- and ETR-3-like factor 3, ELAV-type RNA-binding protein 1, Expanded repeat domain protein CAG/CTG 4, RNA-binding protein BRUNOL-1, Trinucleotide repeat-containing gene 4 protein
All UniProt accessions (2): Q5SZQ8, H0Y623
UniProt curated annotations — full annotation on UniProt →
Function. RNA-binding protein involved in the regulation of pre-mRNA alternative splicing. Mediates exon inclusion and/or exclusion in pre-mRNA that are subject to tissue-specific and developmentally regulated alternative splicing. Specifically activates exon 5 inclusion of cardiac isoforms of TNNT2 during heart remodeling at the juvenile to adult transition. Activates the splicing of MAPT/Tau exon 10. Binds to muscle-specific splicing enhancer (MSE) intronic sites flanking the alternative exon 5 of TNNT2 pre-mRNA.
Subcellular location. Nucleus. Cytoplasm.
Tissue specificity. Expressed in brain.
Polymorphism. The poly-Gln tract in AAK07474 may be polymorphic.
Similarity. Belongs to the CELF/BRUNOL family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5SZQ8-1 | 1 | yes |
| Q5SZQ8-2 | 2 | |
| Q5SZQ8-3 | 3 | |
| Q5SZQ8-4 | 4 |
RefSeq proteins (5): NP_001166119, NP_001166120, NP_001278035, NP_001278036, NP_009116* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000504 | RRM_dom | Domain |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Homologous_superfamily |
| IPR034648 | CELF3/4/5/6_RRM1 | Domain |
| IPR035979 | RBD_domain_sf | Homologous_superfamily |
Pfam: PF00076
UniProt features (22 total): strand 5, sequence conflict 4, domain 3, helix 3, splice variant 3, compositionally biased region 2, chain 1, region of interest 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2DNO | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5SZQ8-F1 | 71.04 | 0.41 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 189 (showing top):
GOBP_POSITIVE_REGULATION_OF_RNA_SPLICING, GOBP_POSITIVE_REGULATION_OF_MRNA_PROCESSING, PEREZ_TP63_TARGETS, LFA1_Q6, GCANCTGNY_MYOD_Q6, GOBP_ALTERNATIVE_MRNA_SPLICING_VIA_SPLICEOSOME, AP4_Q6, GOBP_MALE_GAMETE_GENERATION, CAGCTG_AP4_Q5, SOX9_B1, GOBP_NUCLEUS_ORGANIZATION, GOBP_CILIUM_MOVEMENT, HEN1_01, GOBP_CILIUM_OR_FLAGELLUM_DEPENDENT_CELL_MOTILITY, GOBP_PROTEIN_RNA_COMPLEX_ORGANIZATION
GO Biological Process (10): regulation of alternative mRNA splicing, via spliceosome (GO:0000381), mRNA splice site recognition (GO:0006376), spermatogenesis (GO:0007283), RNA splicing (GO:0008380), flagellated sperm motility (GO:0030317), nuclear body organization (GO:0030575), positive regulation of mRNA splicing, via spliceosome (GO:0048026), lncRNA transcription (GO:0140742), mRNA processing (GO:0006397), gene expression (GO:0010467)
GO Molecular Function (5): RNA binding (GO:0003723), mRNA binding (GO:0003729), pre-mRNA binding (GO:0036002), 7SK snRNA binding (GO:0097322), nucleic acid binding (GO:0003676)
GO Cellular Component (4): nucleus (GO:0005634), cytoplasm (GO:0005737), nuclear body (GO:0016604), ribonucleoprotein complex (GO:1990904)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of mRNA splicing, via spliceosome | 2 |
| RNA processing | 2 |
| RNA binding | 2 |
| alternative mRNA splicing, via spliceosome | 1 |
| spliceosomal complex assembly | 1 |
| protein-RNA complex assembly | 1 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| cilium-dependent cell motility | 1 |
| cilium movement involved in cell motility | 1 |
| sperm motility | 1 |
| nucleus organization | 1 |
| mRNA splicing, via spliceosome | 1 |
| positive regulation of RNA splicing | 1 |
| positive regulation of mRNA processing | 1 |
| DNA-templated transcription | 1 |
| mRNA metabolic process | 1 |
| macromolecule biosynthetic process | 1 |
| nucleic acid binding | 1 |
| snRNA binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| nucleoplasm | 1 |
| intracellular membraneless organelle | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
1384 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CELF3 | CEBPD | P49716 | 900 |
| CELF3 | RRM2 | P31350 | 831 |
| CELF3 | TNNT2 | P45379 | 787 |
| CELF3 | RRM1 | P23921 | 719 |
| CELF3 | MBNL2 | Q5VZF2 | 617 |
| CELF3 | MBNL3 | Q9NUK0 | 589 |
| CELF3 | DMPK | Q09013 | 585 |
| CELF3 | CLCN1 | P35523 | 544 |
| CELF3 | MBNL1 | Q9NR56 | 500 |
| CELF3 | QKI | Q96PU8 | 452 |
| CELF3 | NOVA1 | P51513 | 425 |
| CELF3 | MAPT | P10636 | 410 |
| CELF3 | CCNA2 | P20248 | 406 |
| CELF3 | CCNA1 | P78396 | 402 |
| CELF3 | INSR | P06213 | 369 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ANXA7 | CELF3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CELF3 | CDKN1A | psi-mi:“MI:0915”(physical association) | 0.370 |
| CELF3 | CELF5 | psi-mi:“MI:0914”(association) | 0.350 |
| CELF3 | TLE1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| CELF3 | SOBP | psi-mi:“MI:0915”(physical association) | 0.000 |
| CELF3 | ERG28 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (14): CELF5 (Affinity Capture-MS), MKRN1 (Affinity Capture-MS), CELF3 (Affinity Capture-MS), C14orf1 (Two-hybrid), SOBP (Two-hybrid), TLE1 (Two-hybrid), HID1 (Two-hybrid), CELF5 (Affinity Capture-MS), MKRN1 (Affinity Capture-MS), HSP90AB1 (Cross-Linking-MS (XL-MS)), CELF3 (Two-hybrid), CELF3 (Two-hybrid), CELF3 (Two-hybrid), CELF3 (Two-hybrid)
ESM2 similar proteins: A0A0R4IEW8, A0JM51, A4QNI8, O09032, O57406, P26378, P29558, Q08E07, Q0V9L3, Q14576, Q15434, Q1RMJ7, Q28GD4, Q3ZBP3, Q3ZC34, Q4R535, Q5NVC8, Q5PQP1, Q5R995, Q5RBD3, Q5SZQ8, Q60899, Q60900, Q61701, Q62176, Q6DGV1, Q6DIV4, Q6XE24, Q6YZW2, Q7SZT7, Q7T3I7, Q7TN33, Q7TSY6, Q7ZWM3, Q8BWL5, Q8CH84, Q8CIN6, Q8N6W0, Q8VC70, Q8VXZ9
Diamond homologs: A0A0D1DWZ5, A0JM51, A1CRM1, A1D4K4, A2A5N3, A2Q848, A3LXL0, A4IIM2, A4QUF0, A5DW14, F4HT49, O04319, O14102, O22173, O57406, O64380, O95319, O97018, P04147, P0CB38, P0CP46, P0CP47, P20965, P21187, P28659, P29558, P31209, P32588, P39697, P42731, P60047, P60048, P60049, P60050, Q08E07, Q09442, Q0CR95, Q0U1G2, Q13310, Q15427
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
50 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 39 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2832 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:151705026:CCCA:C | donor_loss | 1.0000 |
| 1:151705027:CCA:C | donor_loss | 1.0000 |
| 1:151705028:CACC:C | donor_loss | 1.0000 |
| 1:151705029:ACC:A | donor_loss | 1.0000 |
| 1:151705030:C:T | donor_loss | 1.0000 |
| 1:151705060:T:TA | donor_gain | 1.0000 |
| 1:151705065:AGG:A | donor_gain | 1.0000 |
| 1:151705818:TTACC:T | donor_loss | 1.0000 |
| 1:151705819:TA:T | donor_loss | 1.0000 |
| 1:151705820:A:AC | donor_gain | 1.0000 |
| 1:151705821:C:CC | donor_gain | 1.0000 |
| 1:151705821:C:CT | donor_loss | 1.0000 |
| 1:151705961:AGGGC:A | acceptor_gain | 1.0000 |
| 1:151705962:GGGC:G | acceptor_gain | 1.0000 |
| 1:151705963:GGC:G | acceptor_gain | 1.0000 |
| 1:151705963:GGCCT:G | acceptor_loss | 1.0000 |
| 1:151705964:GC:G | acceptor_gain | 1.0000 |
| 1:151705965:CC:C | acceptor_gain | 1.0000 |
| 1:151705966:C:CC | acceptor_gain | 1.0000 |
| 1:151705966:C:CG | acceptor_loss | 1.0000 |
| 1:151705970:G:C | acceptor_gain | 1.0000 |
| 1:151705970:G:GC | acceptor_gain | 1.0000 |
| 1:151705974:C:CT | acceptor_gain | 1.0000 |
| 1:151705975:G:T | acceptor_gain | 1.0000 |
| 1:151705977:C:CT | acceptor_gain | 1.0000 |
| 1:151705978:A:T | acceptor_gain | 1.0000 |
| 1:151706196:T:TA | donor_gain | 1.0000 |
| 1:151706218:CAGCA:C | donor_loss | 1.0000 |
| 1:151706220:GCAC:G | donor_loss | 1.0000 |
| 1:151706221:CACCT:C | donor_loss | 1.0000 |
AlphaMissense
3059 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:151705071:C:A | K456N | 1.000 |
| 1:151705071:C:G | K456N | 1.000 |
| 1:151705073:T:C | K456E | 1.000 |
| 1:151705078:T:G | Q454P | 1.000 |
| 1:151705081:A:T | V453D | 1.000 |
| 1:151705083:T:A | K452N | 1.000 |
| 1:151705083:T:G | K452N | 1.000 |
| 1:151705084:T:A | K452I | 1.000 |
| 1:151705085:T:C | K452E | 1.000 |
| 1:151705087:A:C | L451R | 1.000 |
| 1:151705087:A:G | L451P | 1.000 |
| 1:151705087:A:T | L451H | 1.000 |
| 1:151705091:G:T | R450S | 1.000 |
| 1:151705092:C:A | K449N | 1.000 |
| 1:151705092:C:G | K449N | 1.000 |
| 1:151705094:T:C | K449E | 1.000 |
| 1:151705107:G:C | F444L | 1.000 |
| 1:151705107:G:T | F444L | 1.000 |
| 1:151705108:A:G | F444S | 1.000 |
| 1:151705109:A:G | F444L | 1.000 |
| 1:151705111:C:T | G443D | 1.000 |
| 1:151705126:A:T | I438N | 1.000 |
| 1:151705129:G:T | A437D | 1.000 |
| 1:151705138:G:T | A434D | 1.000 |
| 1:151705156:A:G | F428S | 1.000 |
| 1:151705158:A:C | S427R | 1.000 |
| 1:151705158:A:T | S427R | 1.000 |
| 1:151705160:T:G | S427R | 1.000 |
| 1:151705162:A:T | V426E | 1.000 |
| 1:151705164:A:C | F425L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000079312 (1:151716616 A>G), RS1000306906 (1:151701975 G>A,C), RS1000538476 (1:151704347 T>A,C), RS1000554424 (1:151716245 A>C), RS1001066102 (1:151714159 C>T), RS1001274120 (1:151717843 A>G,T), RS1001345939 (1:151703840 C>T), RS1001397320 (1:151710817 G>C), RS1001429815 (1:151710418 G>A), RS1001484236 (1:151718281 T>A), RS1001857224 (1:151712333 T>C), RS1002377158 (1:151712462 G>A), RS1002392431 (1:151704914 G>A,T), RS1002434315 (1:151712104 G>A,C), RS1002511312 (1:151703890 C>T)
Disease associations
OMIM: gene MIM:612678 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): neuromuscular disease (MONDO:0019056)
Orphanet (1): Neuromuscular disease (Orphanet:68381)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009468 | Neuromuscular Diseases | C10.668 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
19 total (human), top 19 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| dimethylselenide | increases expression, increases oxidation | 1 |
| butyraldehyde | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| pentanal | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Cytarabine | increases expression | 1 |
| Estradiol | decreases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Ribonucleotides | affects binding | 1 |
| Testosterone | increases expression | 1 |
| Valproic Acid | increases expression | 1 |
| Reactive Oxygen Species | increases expression, increases oxidation | 1 |
Clinical trials (associated diseases)
198 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00331656 | PHASE4 | UNKNOWN | Comparative Study of Non-Invasive Mask Ventilation vs Cuirass Ventilation in Patients With Acute Respiratory Failure. |
| NCT00994552 | PHASE4 | UNKNOWN | Comparison of Pressure Support and Pressure Control Ventilation in Chronic Respiratory Failure |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00942227 | PHASE3 | COMPLETED | The Value of Traction in Treatment of Lumbar Radiculopathy |
| NCT00979108 | PHASE3 | COMPLETED | The Value of Traction in the Treatment of Cervical Radiculopathy |
| NCT01826487 | PHASE3 | COMPLETED | Phase 3 Study of Ataluren in Participants With Nonsense Mutation Duchenne Muscular Dystrophy (nmDMD) |
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| NCT03179631 | PHASE3 | COMPLETED | Long-Term Outcomes of Ataluren in Duchenne Muscular Dystrophy |
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| NCT05479981 | PHASE2 | COMPLETED | Extension of AOC 1001-CS1 (MARINA) Study in Adult Myotonic Dystrophy Type 1 (DM1) Patients |
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Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): neuromuscular disease