CEP128
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Summary
CEP128 (centrosomal protein 128, HGNC:20359) is a protein-coding gene on chromosome 14q31.1, encoding Centrosomal protein 128 (Q6ZU80). Is involved in the negative regulation of ciliogenesis and plays a role in spermatogenesis.
Involved in protein localization. Located in Golgi apparatus; microtubule cytoskeleton; and nuclear membrane. Part of centriolar subdistal appendage.
Source: NCBI Gene 145508 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 229 total — 3 pathogenic, 3 likely-pathogenic
- MANE Select transcript:
NM_152446
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20359 |
| Approved symbol | CEP128 |
| Name | centrosomal protein 128 |
| Location | 14q31.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000100629 |
| Ensembl biotype | protein_coding |
| OMIM | 620667 |
| Entrez | 145508 |
Gene structure
Transcript identifiers
Ensembl transcripts: 23 — 17 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000216517, ENST00000281129, ENST00000553717, ENST00000554298, ENST00000554368, ENST00000554502, ENST00000554728, ENST00000554827, ENST00000555265, ENST00000555529, ENST00000556042, ENST00000556061, ENST00000556800, ENST00000556981, ENST00000557377, ENST00000557411, ENST00000907054, ENST00000933391, ENST00000933392, ENST00000933393, ENST00000933394, ENST00000933395, ENST00000947694
RefSeq mRNA: 1 — MANE Select: NM_152446
NM_152446
CCDS: CCDS32130
Canonical transcript exons
ENST00000555265 — 25 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000659433 | 80530809 | 80530886 |
| ENSE00001135697 | 80559279 | 80559302 |
| ENSE00001432887 | 80939385 | 80939540 |
| ENSE00001653087 | 80862757 | 80862873 |
| ENSE00001660148 | 80761437 | 80761613 |
| ENSE00001670529 | 80838204 | 80838278 |
| ENSE00001671034 | 80905955 | 80906081 |
| ENSE00001692687 | 80756892 | 80756951 |
| ENSE00001694262 | 80743075 | 80743267 |
| ENSE00001704494 | 80792760 | 80793110 |
| ENSE00001707239 | 80777882 | 80778046 |
| ENSE00001713256 | 80840682 | 80840768 |
| ENSE00001715118 | 80831143 | 80831294 |
| ENSE00001724444 | 80899938 | 80900029 |
| ENSE00001725949 | 80895718 | 80895790 |
| ENSE00001754412 | 80580374 | 80580423 |
| ENSE00001793773 | 80784895 | 80785545 |
| ENSE00001797543 | 80904813 | 80904931 |
| ENSE00001799717 | 80836205 | 80836337 |
| ENSE00002507782 | 80941581 | 80941738 |
| ENSE00002510495 | 80496479 | 80497582 |
| ENSE00003470686 | 80526869 | 80526982 |
| ENSE00003504666 | 80914322 | 80914408 |
| ENSE00003508511 | 80916401 | 80916562 |
| ENSE00003688644 | 80504912 | 80505020 |
Expression profiles
Bgee: expression breadth ubiquitous, 186 present calls, max score 91.34.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.7894 / max 150.3499, expressed in 1399 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 144285 | 4.1353 | 1245 |
| 144284 | 1.1813 | 592 |
| 144286 | 0.8821 | 513 |
| 144287 | 0.2677 | 58 |
| 144283 | 0.1347 | 38 |
| 144288 | 0.1115 | 41 |
| 144289 | 0.0406 | 16 |
| 144290 | 0.0361 | 10 |
Top tissues by expression
238 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bone marrow cell | CL:0002092 | 91.34 | gold quality |
| thymus | UBERON:0002370 | 90.58 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.24 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.15 | gold quality |
| sural nerve | UBERON:0015488 | 84.94 | gold quality |
| ventricular zone | UBERON:0003053 | 83.85 | gold quality |
| calcaneal tendon | UBERON:0003701 | 83.60 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 83.37 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 82.93 | gold quality |
| thyroid gland | UBERON:0002046 | 82.37 | gold quality |
| ganglionic eminence | UBERON:0004023 | 79.40 | gold quality |
| colonic epithelium | UBERON:0000397 | 79.24 | gold quality |
| buccal mucosa cell | CL:0002336 | 78.46 | silver quality |
| endothelial cell | CL:0000115 | 78.25 | gold quality |
| right uterine tube | UBERON:0001302 | 76.66 | gold quality |
| bone marrow | UBERON:0002371 | 75.26 | gold quality |
| tonsil | UBERON:0002372 | 75.08 | gold quality |
| tendon | UBERON:0000043 | 74.56 | gold quality |
| vermiform appendix | UBERON:0001154 | 73.49 | gold quality |
| cortical plate | UBERON:0005343 | 73.42 | gold quality |
| bronchial epithelial cell | CL:0002328 | 73.18 | gold quality |
| stromal cell of endometrium | CL:0002255 | 72.68 | gold quality |
| lymph node | UBERON:0000029 | 72.34 | gold quality |
| bronchus | UBERON:0002185 | 71.71 | gold quality |
| skin of abdomen | UBERON:0001416 | 71.69 | gold quality |
| spleen | UBERON:0002106 | 70.86 | gold quality |
| leukocyte | CL:0000738 | 70.65 | gold quality |
| skin of leg | UBERON:0001511 | 70.60 | gold quality |
| monocyte | CL:0000576 | 70.37 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 70.34 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.58 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
78 targeting CEP128, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-300 | 99.92 | 71.76 | 2856 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-139-5P | 99.80 | 69.50 | 1399 |
| HSA-MIR-5002-5P | 99.76 | 70.84 | 1763 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-10393-5P | 99.65 | 68.01 | 1368 |
| HSA-MIR-6516-3P | 99.65 | 68.57 | 1238 |
Literature-anchored findings (GeneRIF, showing 5)
- CEP128 loss affects TGF-beta1-induced phosphorylation of multiple proteins that regulate cilium-associated vesicle trafficking. (PMID:29514088)
- This study highlight the crucial role of CEP128 in the pathogenesis of Grave’s disease. (PMID:30393005)
- Cep128 deletion decreased the stability of centriolar microtubules. Cep128 associates with Odf2. (PMID:30623524)
- Downregulation of Circ-CEP128 Enhances the Paclitaxel Sensitivity of Cervical Cancer Through Regulating miR-432-5p/MCL1. (PMID:35391656)
- Modulation Effects of the CEP128 Gene on Radiotherapy-Related Brain Injury: A Longitudinal Structural Study Using Multi-Parametric Brain MR Images. (PMID:37249021)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Cep128 | ENSMUSG00000061533 |
| rattus_norvegicus | Cep128 | ENSRNOG00000003908 |
Protein
Protein identifiers
Centrosomal protein 128 — Q6ZU80 (reviewed: Q6ZU80)
Alternative names: Centrosomal protein of 128 kDa
All UniProt accessions (9): Q6ZU80, G3V3F4, G3V3U2, G3V4J9, H0YIZ9, H0YJD7, H0YJE3, H0YJH2, Q86TS1
UniProt curated annotations — full annotation on UniProt →
Function. Is involved in the negative regulation of ciliogenesis and plays a role in spermatogenesis. Contributes to the regulation of the TGFB/BMP signaling pathway at the primary cilium, where it is required for ciliary localization of RAB11A, likely affecting the trafficking and regulation of TGFB/BMP pathway components. Required, together with ODF2, for the formation of the subdistal appendage of the centriole.
Subunit / interactions. Interacts with ODF2; the interaction is required for the formation of the subdistal appendage of the centriole.
Subcellular location. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome. Centriole. Cilium basal body. Spindle pole.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6ZU80-2 | 2 | yes |
| Q6ZU80-1 | 1 | |
| Q6ZU80-3 | 3 |
RefSeq proteins (1): NP_689659* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026652 | CEP128 | Family |
UniProt features (26 total): region of interest 5, modified residue 5, compositionally biased region 4, splice variant 4, sequence variant 3, sequence conflict 2, coiled-coil region 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZU80-F1 | 74.92 | 0.26 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5): 31, 249, 291, 331, 1061
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 147 (showing top):
AAGCAAT_MIR137, GOBP_MALE_GAMETE_GENERATION, GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_CILIUM_ORGANIZATION, GOBP_CILIUM_MOVEMENT, GOCC_CENTROSOME, GOBP_CILIUM_OR_FLAGELLUM_DEPENDENT_CELL_MOTILITY, GOBP_ORGANELLE_ASSEMBLY, GOBP_CELLULAR_PROCESS_INVOLVED_IN_REPRODUCTION_IN_MULTICELLULAR_ORGANISM, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, GOBP_MOTILE_CILIUM_ASSEMBLY, GOBP_CELL_PROJECTION_ORGANIZATION, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, GOCC_SPINDLE, chr14q31
GO Biological Process (5): intracellular protein localization (GO:0008104), regulation of gene expression (GO:0010468), motile cilium assembly (GO:0044458), sperm flagellum assembly (GO:0120316), spermatogenesis (GO:0007283)
GO Molecular Function (0):
GO Cellular Component (10): spindle pole (GO:0000922), Golgi apparatus (GO:0005794), centrosome (GO:0005813), centriole (GO:0005814), nuclear membrane (GO:0031965), ciliary basal body (GO:0036064), centriolar subdistal appendage (GO:0120103), sperm head-tail coupling apparatus (GO:0120212), cytoplasm (GO:0005737), cytoskeleton (GO:0005856)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| microtubule organizing center | 3 |
| developmental process involved in reproduction | 2 |
| intracellular membraneless organelle | 2 |
| cilium | 2 |
| macromolecule localization | 1 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| cilium assembly | 1 |
| spermatid development | 1 |
| flagellated sperm motility | 1 |
| motile cilium assembly | 1 |
| male gamete generation | 1 |
| spindle | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| centriole | 1 |
| nucleus | 1 |
| nuclear envelope | 1 |
| organelle membrane | 1 |
| intracellular protein-containing complex | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
966 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CEP128 | CEP170 | Q5SW79 | 970 |
| CEP128 | CCDC120 | Q96HB5 | 898 |
| CEP128 | CCDC68 | Q9H2F9 | 873 |
| CEP128 | CNTRL | Q7Z7A1 | 842 |
| CEP128 | NIN | Q8N4C6 | 826 |
| CEP128 | CEP89 | Q96ST8 | 745 |
| CEP128 | ODF1 | Q14990 | 735 |
| CEP128 | ODF2 | Q5BJF6 | 719 |
| CEP128 | CEP164 | Q9UPV0 | 709 |
| CEP128 | SCLT1 | Q96NL6 | 698 |
| CEP128 | CEP83 | Q9Y592 | 652 |
| CEP128 | FBF1 | Q8TES7 | 630 |
| CEP128 | STON2 | Q8WXE9 | 597 |
| CEP128 | TUBE1 | Q9UJT0 | 564 |
| CEP128 | CEP131 | Q9UPN4 | 561 |
IntAct
29 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CEP128 | PCM1 | psi-mi:“MI:0914”(association) | 0.420 |
| CEP128 | VIM | psi-mi:“MI:0915”(physical association) | 0.400 |
| OFD1 | CCDC14 | psi-mi:“MI:0914”(association) | 0.350 |
| HDAC1 | ZBTB43 | psi-mi:“MI:0914”(association) | 0.350 |
| rep | TBKBP1 | psi-mi:“MI:0914”(association) | 0.350 |
| CDK5RAP2 | SPTBN2 | psi-mi:“MI:0914”(association) | 0.350 |
| CEP63 | CIBAR1 | psi-mi:“MI:0914”(association) | 0.350 |
| POC5 | PDHX | psi-mi:“MI:0914”(association) | 0.350 |
| CACNA1C | SYT5 | psi-mi:“MI:0914”(association) | 0.350 |
| CACNA1C | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| S100A6 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| S100A4 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| TSNAX | RGPD3 | psi-mi:“MI:0914”(association) | 0.350 |
| INKA2 | CDC42BPA | psi-mi:“MI:0914”(association) | 0.350 |
| NFIB | psi-mi:“MI:0914”(association) | 0.350 | |
| ODF2 | DDX3X | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP128 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CNTRL | ANKRD28 | psi-mi:“MI:2364”(proximity) | 0.270 |
| NIN | AP3D1 | psi-mi:“MI:2364”(proximity) | 0.270 |
| ODF2 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP135 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CNTRL | CCDC85C | psi-mi:“MI:2364”(proximity) | 0.270 |
| NIN | ARPC3 | psi-mi:“MI:2364”(proximity) | 0.270 |
| POC5 | PSMD14 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP63 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP128 | yerA | psi-mi:“MI:0915”(physical association) | 0.000 |
| CEP128 | recN | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (333): CEP128 (Affinity Capture-RNA), CEP128 (Affinity Capture-MS), CEP128 (Affinity Capture-MS), CEP128 (Proximity Label-MS), CEP128 (Proximity Label-MS), CEP128 (Proximity Label-MS), CEP128 (Proximity Label-MS), CEP135 (Affinity Capture-Western), CEP162 (Affinity Capture-Western), KIAA0753 (Affinity Capture-Western), PCM1 (Affinity Capture-Western), SSX2IP (Affinity Capture-Western), ABLIM1 (Proximity Label-MS), ACTR2 (Proximity Label-MS), ADSL (Proximity Label-MS)
ESM2 similar proteins: A0A2R8QCI3, A0JMK8, A3KGV1, A7YH32, A9X1A5, B0KWC9, B6MFW3, B8JK76, G5E861, G9G127, O35550, O35551, P59242, P85120, Q15276, Q3V6T2, Q502I3, Q5BJF6, Q5RG45, Q5SNZ0, Q5TZ80, Q5ZJ27, Q5ZKK5, Q66GS9, Q66KE8, Q6AYX5, Q6DIX6, Q6NRB0, Q6P402, Q6P5D4, Q6PGZ0, Q6VGS5, Q6ZU80, Q7TMK6, Q80UF4, Q80YF0, Q80YT7, Q86SQ7, Q8BIL5, Q8CJ99
Diamond homologs: Q6ZU80, Q8BI22
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 38 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Loss of Nlp from mitotic centrosomes | 7 | 55.5× | 2e-09 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 7 | 55.5× | 2e-09 |
| AURKA Activation by TPX2 | 7 | 53.3× | 2e-09 |
| Recruitment of mitotic centrosome proteins and complexes | 7 | 47.6× | 3e-09 |
| Regulation of PLK1 Activity at G2/M Transition | 7 | 44.4× | 4e-09 |
| Recruitment of NuMA to mitotic centrosomes | 7 | 40.8× | 7e-09 |
| Anchoring of the basal body to the plasma membrane | 7 | 39.6× | 7e-09 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
229 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 3 |
| Uncertain significance | 169 |
| Likely benign | 29 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2696574 | NM_000369.5(TSHR):c.69del (p.Cys24fs) | Pathogenic |
| 2770278 | NM_000369.5(TSHR):c.22C>T (p.Gln8Ter) | Pathogenic |
| 2901036 | NM_000369.5(TSHR):c.87C>A (p.Cys29Ter) | Pathogenic |
| 3063337 | GRCh37/hg19 14q31.1-31.3(chr14:79782316-86358101)x3 | Likely pathogenic |
| 4055803 | NM_000369.5(TSHR):c.3G>A (p.Met1Ile) | Likely pathogenic |
| 4086209 | NM_000369.5(TSHR):c.96del (p.Gln33fs) | Likely pathogenic |
SpliceAI
6734 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:80504905:TAC:T | donor_loss | 1.0000 |
| 14:80504906:ACT:A | donor_loss | 1.0000 |
| 14:80504907:CTT:C | donor_loss | 1.0000 |
| 14:80504908:T:TA | donor_loss | 1.0000 |
| 14:80504909:T:TG | donor_loss | 1.0000 |
| 14:80504910:A:AC | donor_gain | 1.0000 |
| 14:80504910:ACAGT:A | donor_loss | 1.0000 |
| 14:80504911:C:CA | donor_gain | 1.0000 |
| 14:80504911:CA:C | donor_gain | 1.0000 |
| 14:80504911:CAG:C | donor_gain | 1.0000 |
| 14:80504911:CAGTT:C | donor_gain | 1.0000 |
| 14:80505019:CC:C | acceptor_gain | 1.0000 |
| 14:80505020:CC:C | acceptor_gain | 1.0000 |
| 14:80505021:C:CC | acceptor_gain | 1.0000 |
| 14:80526867:A:AC | donor_gain | 1.0000 |
| 14:80526868:C:CC | donor_gain | 1.0000 |
| 14:80526869:TTTGA:T | donor_gain | 1.0000 |
| 14:80526870:TTGAA:T | donor_gain | 1.0000 |
| 14:80526889:A:AC | donor_gain | 1.0000 |
| 14:80526890:C:CC | donor_gain | 1.0000 |
| 14:80530717:T:TA | donor_gain | 1.0000 |
| 14:80530766:A:AC | donor_gain | 1.0000 |
| 14:80530767:C:CC | donor_gain | 1.0000 |
| 14:80530798:CT:C | donor_gain | 1.0000 |
| 14:80530807:A:AC | donor_gain | 1.0000 |
| 14:80530808:C:CC | donor_gain | 1.0000 |
| 14:80530808:CT:C | donor_gain | 1.0000 |
| 14:80530885:CT:C | acceptor_gain | 1.0000 |
| 14:80530887:C:CC | acceptor_gain | 1.0000 |
| 14:80568952:AACTG:A | donor_gain | 1.0000 |
AlphaMissense
7229 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:80743260:A:G | L874P | 0.996 |
| 14:80743251:A:G | L877P | 0.995 |
| 14:80743255:A:G | W876R | 0.992 |
| 14:80743255:A:T | W876R | 0.992 |
| 14:80743239:A:G | L881P | 0.991 |
| 14:80785016:A:G | L697P | 0.988 |
| 14:80785037:C:G | R690P | 0.988 |
| 14:80792864:C:G | A486P | 0.987 |
| 14:80761540:A:G | L817P | 0.986 |
| 14:80756892:C:A | K871N | 0.985 |
| 14:80756892:C:G | K871N | 0.985 |
| 14:80785007:A:G | L700P | 0.985 |
| 14:80784921:C:G | A729P | 0.983 |
| 14:80784953:A:G | L718P | 0.982 |
| 14:80756911:C:G | R865P | 0.981 |
| 14:80761514:A:G | S826P | 0.981 |
| 14:80862848:A:G | L224P | 0.981 |
| 14:80914392:A:G | L55P | 0.981 |
| 14:80756909:A:G | W866R | 0.980 |
| 14:80756909:A:T | W866R | 0.980 |
| 14:80761478:C:G | A838P | 0.980 |
| 14:80785166:A:G | L647P | 0.980 |
| 14:80862851:C:G | R223P | 0.980 |
| 14:80761477:G:T | A838D | 0.979 |
| 14:80743262:T:A | K873N | 0.978 |
| 14:80743262:T:G | K873N | 0.978 |
| 14:80756903:C:G | A868P | 0.978 |
| 14:80784899:A:G | L736P | 0.978 |
| 14:80761552:A:G | L813P | 0.977 |
| 14:80792843:A:G | W493R | 0.976 |
dbSNP variants (sampled 300 via entrez): RS1000004701 (14:80489294 C>A,T), RS1000008020 (14:80567964 C>T), RS1000019663 (14:80499357 G>A), RS1000024515 (14:80494258 T>C,G), RS1000035704 (14:80737172 G>A), RS1000036013 (14:80808811 T>C), RS1000037302 (14:80662538 A>G,T), RS1000041209 (14:80821139 C>G,T), RS1000043947 (14:80695980 C>G,T), RS1000044974 (14:80863742 G>C,T), RS1000045554 (14:80569094 T>C), RS1000048281 (14:80658491 A>G), RS1000052681 (14:80577069 T>A,C), RS1000055496 (14:80919213 A>T), RS1000057043 (14:80896396 A>G)
Disease associations
OMIM: gene MIM:620667 | disease phenotypes: MIM:275200, MIM:603373, MIM:609152, MIM:275000
GenCC curated gene-disease
Mondo (4): hypothyroidism due to TSH receptor mutations (MONDO:0010142), familial gestational hyperthyroidism (MONDO:0011309), familial hyperthyroidism due to mutations in TSH receptor (MONDO:0012203), Graves disease, susceptibility to, 1 (MONDO:0100489)
Orphanet (3): Familial hyperthyroidism due to mutations in TSH receptor (Orphanet:424), Hypothyroidism due to TSH receptor mutations (Orphanet:90673), Familial gestational hyperthyroidism (Orphanet:99819)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003124_8 | Mild influenza (H1N1) infection | 3.000000e-08 |
| GCST003264_1043 | Post bronchodilator FEV1/FVC ratio | 3.000000e-06 |
| GCST007200_1 | Radiation-induced brain injury in nasopharyngeal carcinoma | 6.000000e-09 |
| GCST007200_2 | Radiation-induced brain injury in nasopharyngeal carcinoma | 3.000000e-07 |
| GCST010653_77 | Thyroid stimulating hormone levels | 9.000000e-17 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:1001488 | influenza A (H1N1) |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0009704 | radiation-induced brain injury |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C566384 | Hyperthyroidism, Familial Gestational (supp.) | |
| C563786 | Hyperthyroidism, Nonautoimmune (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
54 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, increases expression, increases methylation | 3 |
| Benzo(a)pyrene | decreases expression | 3 |
| sodium arsenite | increases abundance, increases expression | 2 |
| Resveratrol | affects cotreatment, increases expression | 2 |
| Acetaminophen | increases expression | 2 |
| Valproic Acid | decreases expression, increases expression | 2 |
| Aflatoxin B1 | increases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | increases methylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| manganese chloride | decreases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| epigallocatechin gallate | decreases expression, affects cotreatment | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| monomethylarsonous acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Dasatinib | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Vorinostat | increases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial gestational hyperthyroidism, familial hyperthyroidism due to mutations in TSH receptor, Graves disease, susceptibility to, 1, hypothyroidism due to TSH receptor mutations