CEP295
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Summary
CEP295 (centrosomal protein 295, HGNC:29366) is a protein-coding gene on chromosome 11q21, encoding Centrosomal protein of 295 kDa (Q9C0D2). Centriole-enriched microtubule-binding protein involved in centriole biogenesis.
Enables microtubule binding activity. Involved in several processes, including centriole replication; positive regulation of protein acetylation; and regulation of centrosome duplication. Located in cytoplasm and microtubule cytoskeleton.
Source: NCBI Gene 85459 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 468 total — 4 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 58
- MANE Select transcript:
NM_033395
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29366 |
| Approved symbol | CEP295 |
| Name | centrosomal protein 295 |
| Location | 11q21 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000166004 |
| Ensembl biotype | protein_coding |
| OMIM | 617728 |
| Entrez | 85459 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 6 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000325212, ENST00000529185, ENST00000530425, ENST00000531404, ENST00000531622, ENST00000531700, ENST00000531877
RefSeq mRNA: 1 — MANE Select: NM_033395
NM_033395
CCDS: CCDS44708
Canonical transcript exons
ENST00000325212 — 30 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001098890 | 93706745 | 93706897 |
| ENSE00001098892 | 93702776 | 93702919 |
| ENSE00001196153 | 93721954 | 93722050 |
| ENSE00001196157 | 93721312 | 93721412 |
| ENSE00001598689 | 93729614 | 93729781 |
| ENSE00001601754 | 93728681 | 93728821 |
| ENSE00001604237 | 93726976 | 93727637 |
| ENSE00001607382 | 93723041 | 93723289 |
| ENSE00001647333 | 93724254 | 93724375 |
| ENSE00001770749 | 93729870 | 93729969 |
| ENSE00001795869 | 93729434 | 93729530 |
| ENSE00001803608 | 93730049 | 93730148 |
| ENSE00002164396 | 93661682 | 93661774 |
| ENSE00003460300 | 93679412 | 93679552 |
| ENSE00003470758 | 93683559 | 93683742 |
| ENSE00003485084 | 93702460 | 93702637 |
| ENSE00003579692 | 93669677 | 93669770 |
| ENSE00003594720 | 93696320 | 93696417 |
| ENSE00003600740 | 93725651 | 93725831 |
| ENSE00003622643 | 93666682 | 93666815 |
| ENSE00003633523 | 93667607 | 93667807 |
| ENSE00003635094 | 93695497 | 93695634 |
| ENSE00003637206 | 93696682 | 93700186 |
| ENSE00003637230 | 93675571 | 93675666 |
| ENSE00003646600 | 93691683 | 93691775 |
| ENSE00003647665 | 93687644 | 93687865 |
| ENSE00003649006 | 93683964 | 93684128 |
| ENSE00003653409 | 93691927 | 93692030 |
| ENSE00003661589 | 93668808 | 93668932 |
| ENSE00003742008 | 93730231 | 93730358 |
Expression profiles
Bgee: expression breadth ubiquitous, 250 present calls, max score 95.98.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.7781 / max 559.7910, expressed in 1762 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 116234 | 17.7781 | 1762 |
Top tissues by expression
252 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| oocyte | CL:0000023 | 95.98 | gold quality |
| secondary oocyte | CL:0000655 | 95.07 | gold quality |
| sperm | CL:0000019 | 91.96 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 88.76 | gold quality |
| ventricular zone | UBERON:0003053 | 88.42 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 86.93 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.65 | gold quality |
| tendon | UBERON:0000043 | 86.13 | gold quality |
| calcaneal tendon | UBERON:0003701 | 85.72 | gold quality |
| ganglionic eminence | UBERON:0004023 | 85.55 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 84.46 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 84.24 | gold quality |
| cerebellar cortex | UBERON:0002129 | 84.15 | gold quality |
| thymus | UBERON:0002370 | 83.87 | gold quality |
| cerebellum | UBERON:0002037 | 83.80 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 83.79 | silver quality |
| adrenal tissue | UBERON:0018303 | 83.57 | gold quality |
| buccal mucosa cell | CL:0002336 | 83.50 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 83.39 | gold quality |
| endothelial cell | CL:0000115 | 83.37 | gold quality |
| primary visual cortex | UBERON:0002436 | 82.91 | gold quality |
| pylorus | UBERON:0001166 | 82.87 | gold quality |
| corpus callosum | UBERON:0002336 | 82.23 | gold quality |
| seminal vesicle | UBERON:0000998 | 81.84 | gold quality |
| occipital lobe | UBERON:0002021 | 81.73 | gold quality |
| bone marrow | UBERON:0002371 | 81.63 | gold quality |
| cerebellar vermis | UBERON:0004720 | 81.63 | gold quality |
| oviduct epithelium | UBERON:0004804 | 81.61 | gold quality |
| cortical plate | UBERON:0005343 | 81.39 | gold quality |
| mucosa of stomach | UBERON:0001199 | 81.20 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.19 |
| E-MTAB-7303 | no | 116.66 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 6)
- data suggest centrosomal functions for C10orf90 and KIAA1731 and new centriole-related functions for ALMS1. (PMID:20844083)
- A newborn centriole-enriched protein, KIAA1731/CEP295, specifically mediates centriole-to-centrosome conversion but dispensable for cartwheel removal. (PMID:25131205)
- our results indicate that CEP295 directly interacts with microtubules, and that excess CEP295 could induce the assembly of overly long centrioles. Furthermore, exogenous expression of the N-terminal domain of CEP295 exerts a dominant-negative effect on centriole elongation. Collectively, these findings suggest that CEP295 is essential for building the distal half centrioles and for post-translational modification of centr (PMID:27185865)
- Study shows that the interaction between Cep295 and Cep192 seems to be crucial for the integrity of centriole structure and also for daughter-to-mother centriole conversion. (PMID:27562453)
- Coding variants in the PCNT and CEP295 genes contribute to breast cancer risk in Chinese women. (PMID:34418690)
- Bi-allelic variants in CEP295 cause Seckel-like syndrome presenting with primary microcephaly, developmental delay, intellectual disability, short stature, craniofacial and digital abnormalities. (PMID:38154379)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | alms1 | ENSDARG00000074779 |
| mus_musculus | Cep295 | ENSMUSG00000046111 |
| rattus_norvegicus | Cep295 | ENSRNOG00000010999 |
Paralogs (3): ALMS1 (ENSG00000116127), C10orf90 (ENSG00000154493), CEP295NL (ENSG00000178404)
Protein
Protein identifiers
Centrosomal protein of 295 kDa — Q9C0D2 (reviewed: Q9C0D2)
All UniProt accessions (5): E9PJG3, E9PJY3, Q9C0D2, E9PM20, H0YDK0
UniProt curated annotations — full annotation on UniProt →
Function. Centriole-enriched microtubule-binding protein involved in centriole biogenesis. Essential for the generation of the distal portion of new-born centrioles in a CPAP- and CEP120-mediated elongation dependent manner during the cell cycle S/G2 phase after formation of the initiating cartwheel structure. Required for the recruitment of centriolar proteins, such as POC1B, POC5 and CEP135, into the distal portion of centrioles. Also required for centriole-to-centrosome conversion during mitotic progression, but is dispensable for cartwheel removal or centriole disengagement. Binds to and stabilizes centriolar microtubule. May be involved in ciliogenesis.
Subunit / interactions. Interacts (via ALMS motif) with microtubules; this interaction is direct.
Subcellular location. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome. Centriole. Spindle.
Disease relevance. Seckel syndrome 11 (SCKL11) [MIM:620767] A form of Seckel syndrome, a rare autosomal recessive disorder characterized by proportionate dwarfism of prenatal onset associated with low birth weight, growth retardation, severe microcephaly with a bird-headed like appearance, and intellectual disability. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The N-terminal and the ALMS motif-containing C-terminal regions are essential for CEP295-mediated centriole elongation.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9C0D2-1 | 1 | yes |
| Q9C0D2-2 | 2 | |
| Q9C0D2-3 | 3 | |
| Q9C0D2-4 | 4 |
RefSeq proteins (1): NP_203753* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR029299 | ALMS_motif | Domain |
Pfam: PF15309
UniProt features (45 total): sequence variant 10, region of interest 7, sequence conflict 7, coiled-coil region 6, compositionally biased region 5, modified residue 5, splice variant 4, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9C0D2-F1 | 44.76 | 0.09 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5): 14, 654, 938, 1637, 2473
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 235 (showing top):
GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_REGULATION_OF_CENTRIOLE_REPLICATION, GOBP_CENTRIOLE_ASSEMBLY, GOBP_POSITIVE_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_PROTEIN_ACETYLATION, GOBP_REGULATION_OF_CELL_CYCLE, GOCC_CENTROSOME, GOBP_POSITIVE_REGULATION_OF_CELL_CYCLE_PROCESS, GOBP_REGULATION_OF_CENTROSOME_CYCLE, GOBP_ORGANELLE_ASSEMBLY, GOBP_REGULATION_OF_PROTEIN_ACETYLATION, GOBP_POSITIVE_REGULATION_OF_PROTEIN_ACETYLATION
GO Biological Process (7): centriole replication (GO:0007099), positive regulation of centrosome duplication (GO:0010825), cell projection organization (GO:0030030), regulation of centriole replication (GO:0046599), positive regulation of protein acetylation (GO:1901985), positive regulation of centriole elongation (GO:1903724), positive regulation of establishment of protein localization (GO:1904951)
GO Molecular Function (1): microtubule binding (GO:0008017)
GO Cellular Component (7): cytoplasm (GO:0005737), centrosome (GO:0005813), centriole (GO:0005814), cytosol (GO:0005829), cytoskeleton (GO:0005856), mitotic spindle microtubule (GO:1990498), spindle (GO:0005819)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular membraneless organelle | 3 |
| centrosome duplication | 2 |
| regulation of centrosome duplication | 2 |
| cellular anatomical structure | 2 |
| microtubule organizing center | 2 |
| cell cycle process | 1 |
| centriole assembly | 1 |
| positive regulation of cell cycle process | 1 |
| cellular component organization | 1 |
| centriole replication | 1 |
| regulation of organelle assembly | 1 |
| protein acetylation | 1 |
| positive regulation of protein modification process | 1 |
| regulation of protein acetylation | 1 |
| positive regulation of centriole replication | 1 |
| centriole elongation | 1 |
| regulation of centriole elongation | 1 |
| establishment of protein localization | 1 |
| positive regulation of biological process | 1 |
| regulation of establishment of protein localization | 1 |
| tubulin binding | 1 |
| intracellular anatomical structure | 1 |
| centriole | 1 |
| cytoplasm | 1 |
| spindle microtubule | 1 |
| mitotic spindle | 1 |
| microtubule cytoskeleton | 1 |
Protein interactions and networks
STRING
778 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CEP295 | CEP135 | Q66GS9 | 845 |
| CEP295 | SASS6 | Q6UVJ0 | 791 |
| CEP295 | CEP152 | O94986 | 780 |
| CEP295 | CEP192 | Q8TEP8 | 756 |
| CEP295 | POC1B | Q8TC44 | 719 |
| CEP295 | PLK4 | O00444 | 699 |
| CEP295 | CPAP | Q9HC77 | 680 |
| CEP295 | POC5 | Q8NA72 | 653 |
| CEP295 | CCP110 | O43303 | 648 |
| CEP295 | PPP1R35 | Q8TAP8 | 646 |
| CEP295 | CEP120 | Q8N960 | 645 |
| CEP295 | RTTN | Q86VV8 | 622 |
| CEP295 | PCNT | O95613 | 609 |
| CEP295 | CNTROB | Q8N137 | 587 |
| CEP295 | SPICE1 | Q8N0Z3 | 579 |
IntAct
41 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SLC31A1 | C2orf72 | psi-mi:“MI:0914”(association) | 0.530 |
| MLF1 | NDC80 | psi-mi:“MI:0914”(association) | 0.530 |
| SPICE1 | SERPINB2 | psi-mi:“MI:0914”(association) | 0.530 |
| Cep135 | psi-mi:“MI:0914”(association) | 0.350 | |
| Dctn3 | psi-mi:“MI:0914”(association) | 0.350 | |
| Cep120 | TBC1D31 | psi-mi:“MI:0914”(association) | 0.350 |
| CEP43 | CCHCR1 | psi-mi:“MI:0914”(association) | 0.350 |
| KIF11 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| Cep131 | WBP2 | psi-mi:“MI:0914”(association) | 0.350 |
| OFD1 | CCDC14 | psi-mi:“MI:0914”(association) | 0.350 |
| CEP135 | TBC1D31 | psi-mi:“MI:0914”(association) | 0.350 |
| Cep43 | TBC1D31 | psi-mi:“MI:0914”(association) | 0.350 |
| Ankrd26 | TBC1D31 | psi-mi:“MI:0914”(association) | 0.350 |
| Prkar2a | TBC1D31 | psi-mi:“MI:0914”(association) | 0.350 |
| Lrrcc1 | CCDC14 | psi-mi:“MI:0914”(association) | 0.350 |
| Cep72 | TBC1D31 | psi-mi:“MI:0914”(association) | 0.350 |
| SNCA | SRRM1 | psi-mi:“MI:0914”(association) | 0.350 |
| CCDC14 | TBC1D31 | psi-mi:“MI:0914”(association) | 0.350 |
| EGLN3 | FAM168B | psi-mi:“MI:0914”(association) | 0.350 |
| PB2 | PIK3R2 | psi-mi:“MI:0914”(association) | 0.350 |
| PB2 | IPO5 | psi-mi:“MI:0914”(association) | 0.350 |
| KATNAL2 | CDK1 | psi-mi:“MI:0914”(association) | 0.350 |
| CEP63 | CIBAR1 | psi-mi:“MI:0914”(association) | 0.350 |
| HSPA4 | HSPA8 | psi-mi:“MI:0914”(association) | 0.350 |
| CDC16 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| S100A2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| CFAP184 | TARS3 | psi-mi:“MI:0914”(association) | 0.350 |
| DUSP16 | MEIOC | psi-mi:“MI:0914”(association) | 0.350 |
| TRIM52 | MEIOC | psi-mi:“MI:0914”(association) | 0.350 |
| GOLGA6L2 | GOLGA6L6 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (93): CEP295 (Proximity Label-MS), CEP295 (Proximity Label-MS), CEP295 (Proximity Label-MS), CEP295 (Proximity Label-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS), CEP295 (Affinity Capture-MS)
ESM2 similar proteins: A2ASS6, A8DYP0, E9QMW4, G4SLH0, J7M799, M9MRD1, O15061, O43491, O55103, O70318, O75952, O77788, P07197, P08553, P08855, P11799, P12839, P16053, P27321, P51125, P54938, P57786, P82179, P83741, Q06637, Q13061, Q23551, Q28820, Q4R3X7, Q63425, Q66H38, Q696W0, Q6TS35, Q70IV5, Q7Z589, Q7ZUV7, Q86TC9, Q8BMB0, Q8TC56, Q8WZ42
Diamond homologs: A4L9P8, Q8BQ48, Q9C0D2
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 61 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Loss of Nlp from mitotic centrosomes | 7 | 38.3× | 5e-08 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 7 | 38.3× | 5e-08 |
| AURKA Activation by TPX2 | 7 | 36.8× | 5e-08 |
| Recruitment of mitotic centrosome proteins and complexes | 7 | 32.8× | 8e-08 |
| Regulation of PLK1 Activity at G2/M Transition | 7 | 30.6× | 1e-07 |
| Recruitment of NuMA to mitotic centrosomes | 7 | 28.1× | 2e-07 |
| Anchoring of the basal body to the plasma membrane | 7 | 27.3× | 2e-07 |
| M Phase | 6 | 13.7× | 1e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cilium assembly | 6 | 9.8× | 4e-03 |
| cell division | 7 | 7.2× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
468 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 1 |
| Uncertain significance | 378 |
| Likely benign | 31 |
| Benign | 20 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3062331 | NM_033395.2(CEP295):c.1630C>T (p.Gln544Ter) | Pathogenic |
| 3062332 | NM_033395.2(CEP295):c.4558C>T (p.Arg1520Ter) | Pathogenic |
| 3062333 | NM_033395.2(CEP295):c.1685C>T (p.Pro562Leu) | Pathogenic |
| 3062334 | NM_033395.2(CEP295):c.163_164del (p.Arg55fs) | Pathogenic |
| 4292262 | NM_033395.2(CEP295):c.4629del (p.Glu1544fs) | Likely pathogenic |
SpliceAI
4187 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:93666679:CA:C | acceptor_loss | 1.0000 |
| 11:93666680:A:AG | acceptor_gain | 1.0000 |
| 11:93666680:AGA:A | acceptor_loss | 1.0000 |
| 11:93666681:G:GA | acceptor_gain | 1.0000 |
| 11:93666681:GA:G | acceptor_gain | 1.0000 |
| 11:93666681:GAA:G | acceptor_gain | 1.0000 |
| 11:93666681:GAAC:G | acceptor_gain | 1.0000 |
| 11:93666681:GAACT:G | acceptor_gain | 1.0000 |
| 11:93666816:G:GC | donor_loss | 1.0000 |
| 11:93666816:G:GG | donor_gain | 1.0000 |
| 11:93667598:A:AG | acceptor_gain | 1.0000 |
| 11:93667599:T:G | acceptor_gain | 1.0000 |
| 11:93667604:TA:T | acceptor_loss | 1.0000 |
| 11:93667605:A:AG | acceptor_gain | 1.0000 |
| 11:93667606:G:GA | acceptor_gain | 1.0000 |
| 11:93667606:GGTTC:G | acceptor_gain | 1.0000 |
| 11:93667761:C:T | donor_gain | 1.0000 |
| 11:93667803:AAAAT:A | donor_gain | 1.0000 |
| 11:93667804:AAAT:A | donor_gain | 1.0000 |
| 11:93667805:AAT:A | donor_gain | 1.0000 |
| 11:93667806:AT:A | donor_gain | 1.0000 |
| 11:93667806:ATG:A | donor_loss | 1.0000 |
| 11:93667807:TG:T | donor_loss | 1.0000 |
| 11:93667808:GTGA:G | donor_gain | 1.0000 |
| 11:93667810:GA:G | donor_gain | 1.0000 |
| 11:93667811:A:AG | donor_gain | 1.0000 |
| 11:93667812:G:GG | donor_gain | 1.0000 |
| 11:93669672:TTAA:T | acceptor_loss | 1.0000 |
| 11:93669674:A:AG | acceptor_gain | 1.0000 |
| 11:93669674:AAG:A | acceptor_gain | 1.0000 |
AlphaMissense
17145 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:93666796:G:C | R30P | 0.996 |
| 11:93667611:G:C | R38P | 0.992 |
| 11:93666802:T:C | L32P | 0.990 |
| 11:93683715:T:C | F308L | 0.990 |
| 11:93683717:T:A | F308L | 0.990 |
| 11:93683717:T:G | F308L | 0.990 |
| 11:93669691:G:C | R150P | 0.988 |
| 11:93730140:T:C | F2587L | 0.988 |
| 11:93730142:C:A | F2587L | 0.988 |
| 11:93730142:C:G | F2587L | 0.988 |
| 11:93666794:G:C | R29S | 0.987 |
| 11:93666794:G:T | R29S | 0.987 |
| 11:93666806:A:C | R33S | 0.987 |
| 11:93666806:A:T | R33S | 0.987 |
| 11:93666811:T:C | L35P | 0.985 |
| 11:93667617:A:C | Q40P | 0.984 |
| 11:93668859:G:C | A121P | 0.983 |
| 11:93668880:G:C | A128P | 0.982 |
| 11:93669699:G:C | A153P | 0.982 |
| 11:93683584:T:C | L264P | 0.982 |
| 11:93666805:G:C | R33T | 0.981 |
| 11:93666747:A:C | S14R | 0.980 |
| 11:93666749:T:A | S14R | 0.980 |
| 11:93666749:T:G | S14R | 0.980 |
| 11:93666808:T:C | L34S | 0.975 |
| 11:93683716:T:C | F308S | 0.975 |
| 11:93683709:T:C | F306L | 0.974 |
| 11:93683711:T:A | F306L | 0.974 |
| 11:93683711:T:G | F306L | 0.974 |
| 11:93666793:G:C | R29T | 0.973 |
dbSNP variants (sampled 300 via entrez): RS1000020156 (11:93675943 A>G,T), RS1000071930 (11:93719255 T>C), RS1000088376 (11:93725454 C>A), RS1000127707 (11:93700528 T>C), RS1000242835 (11:93700335 TAA>T), RS1000250716 (11:93718328 C>T), RS1000308937 (11:93669434 A>G), RS1000336557 (11:93719557 C>A,T), RS1000345613 (11:93679968 G>A), RS1000401967 (11:93687010 T>C), RS1000460405 (11:93680091 A>G), RS1000494091 (11:93682501 G>A), RS1000607237 (11:93660857 G>A), RS1000656954 (11:93666885 A>C,G), RS1000853248 (11:93692185 T>C)
Disease associations
OMIM: gene MIM:617728 | disease phenotypes: MIM:620767, MIM:249000
GenCC curated gene-disease
Mondo (2): Seckel syndrome 11 (MONDO:0958328), Meckel syndrome (MONDO:0018921)
Orphanet (1): Meckel syndrome (Orphanet:564)
HPO phenotypes
58 total (30 of 58 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000218 | High palate |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000252 | Microcephaly |
| HP:0000275 | Narrow face |
| HP:0000278 | Retrognathia |
| HP:0000319 | Smooth philtrum |
| HP:0000340 | Sloping forehead |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000363 | Abnormal earlobe morphology |
| HP:0000387 | Absent earlobe |
| HP:0000411 | Protruding ear |
| HP:0000426 | Prominent nasal bridge |
| HP:0000444 | Convex nasal ridge |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000501 | Glaucoma |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000678 | Dental crowding |
| HP:0000682 | Abnormal dental enamel morphology |
| HP:0000687 | Widely spaced teeth |
| HP:0000750 | Delayed speech and language development |
| HP:0001159 | Syndactyly |
| HP:0001249 | Intellectual disability |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
| HP:0001302 | Pachygyria |
| HP:0001363 | Craniosynostosis |
| HP:0001382 | Joint hypermobility |
| HP:0001385 | Hip dysplasia |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004063_122 | Waist circumference adjusted for body mass index | 1.000000e-19 |
| GCST004063_18 | Waist circumference adjusted for body mass index | 1.000000e-08 |
| GCST004250_37 | Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL) | 4.000000e-06 |
| GCST009856_43 | Leukocyte telomere length | 7.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0007965 | response to combination chemotherapy |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| homosalate | affects cotreatment, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| Irinotecan | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Fulvestrant | increases methylation, affects cotreatment | 1 |
| Acetaminophen | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cisplatin | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Endosulfan | decreases expression | 1 |
| Plant Extracts | increases expression, affects cotreatment | 1 |
| Polystyrenes | affects cotreatment, increases expression | 1 |
| Aflatoxin M1 | decreases expression | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01401998 | Not specified | RECRUITING | ARPKD Database Study |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Meckel syndrome, Seckel syndrome 11