CEP76
gene geneOn this page
Also known as HsT1705FLJ12542
Summary
CEP76 (centrosomal protein 76, HGNC:25727) is a protein-coding gene on chromosome 18p11.21, encoding Centrosomal protein of 76 kDa (Q8TAP6). Centrosomal protein involved in regulation of centriole duplication.
This gene encodes a centrosomal protein which regulates centriole amplification by limiting centriole duplication to once per cell cycle. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 79959 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 111 total — 2 pathogenic, 10 likely-pathogenic
- MANE Select transcript:
NM_024899
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25727 |
| Approved symbol | CEP76 |
| Name | centrosomal protein 76 |
| Location | 18p11.21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HsT1705, FLJ12542 |
| Ensembl gene | ENSG00000101624 |
| Ensembl biotype | protein_coding |
| OMIM | 620791 |
| Entrez | 79959 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 8 protein_coding, 4 protein_coding_CDS_not_defined, 3 nonsense_mediated_decay
ENST00000262127, ENST00000423709, ENST00000585751, ENST00000586887, ENST00000587666, ENST00000587929, ENST00000589490, ENST00000589875, ENST00000590143, ENST00000591034, ENST00000592660, ENST00000593250, ENST00000939320, ENST00000939321, ENST00000945267
RefSeq mRNA: 2 — MANE Select: NM_024899
NM_001271989, NM_024899
CCDS: CCDS11861, CCDS62390
Canonical transcript exons
ENST00000262127 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001899367 | 12672625 | 12673503 |
| ENSE00001956964 | 12702486 | 12702723 |
| ENSE00003458391 | 12686262 | 12686450 |
| ENSE00003489597 | 12698979 | 12699203 |
| ENSE00003490666 | 12699830 | 12699905 |
| ENSE00003549911 | 12700958 | 12701113 |
| ENSE00003552626 | 12678109 | 12678442 |
| ENSE00003617515 | 12691359 | 12691487 |
| ENSE00003630885 | 12697223 | 12697408 |
| ENSE00003640231 | 12680662 | 12680828 |
| ENSE00003655233 | 12695254 | 12695351 |
| ENSE00003672756 | 12674536 | 12674753 |
Expression profiles
Bgee: expression breadth ubiquitous, 247 present calls, max score 95.70.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.6216 / max 87.8434, expressed in 1783 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 171247 | 4.5073 | 1670 |
| 171248 | 2.5984 | 1131 |
| 171246 | 1.9586 | 1091 |
| 171250 | 0.3823 | 196 |
| 171249 | 0.1716 | 58 |
| 171245 | 0.0034 | 1 |
Top tissues by expression
280 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 95.70 | gold quality |
| oocyte | CL:0000023 | 95.50 | gold quality |
| sperm | CL:0000019 | 93.84 | gold quality |
| male germ cell | CL:0000015 | 91.00 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.22 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 88.06 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 88.03 | gold quality |
| left testis | UBERON:0004533 | 86.32 | gold quality |
| right testis | UBERON:0004534 | 86.20 | gold quality |
| testis | UBERON:0000473 | 86.02 | gold quality |
| oral cavity | UBERON:0000167 | 84.88 | gold quality |
| gingival epithelium | UBERON:0001949 | 84.79 | gold quality |
| gingiva | UBERON:0001828 | 84.55 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 84.23 | gold quality |
| ventricular zone | UBERON:0003053 | 83.76 | gold quality |
| cortical plate | UBERON:0005343 | 83.45 | gold quality |
| ganglionic eminence | UBERON:0004023 | 83.43 | gold quality |
| adrenal tissue | UBERON:0018303 | 83.03 | gold quality |
| calcaneal tendon | UBERON:0003701 | 83.00 | gold quality |
| cerebellar vermis | UBERON:0004720 | 82.45 | gold quality |
| embryo | UBERON:0000922 | 82.16 | gold quality |
| squamous epithelium | UBERON:0006914 | 80.58 | gold quality |
| amniotic fluid | UBERON:0000173 | 79.94 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 79.76 | gold quality |
| adult organism | UBERON:0007023 | 79.72 | gold quality |
| corpus epididymis | UBERON:0004359 | 79.65 | gold quality |
| buccal mucosa cell | CL:0002336 | 79.46 | gold quality |
| penis | UBERON:0000989 | 79.40 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 78.70 | gold quality |
| cerebellum | UBERON:0002037 | 78.63 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 6.29 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
56 targeting CEP76, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-300 | 99.92 | 71.76 | 2856 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
Literature-anchored findings (GeneRIF, showing 3)
- Enforced Cep76 expression specifically inhibits centriole amplification in cells undergoing multiple rounds of duplication without preventing the formation of extra procentrioles from a parental template. (PMID:19460342)
- Here, we found that centrosomal protein of 76 kDa (Cep76), previously shown to restrain centriole amplification, interacts with cyclin-dependent kinase 2 (CDK2) and is a bona fide substrate of this kinase. Cep76 is preferentially phosphorylated by cyclin A/CDK2 at a single site S83, and this event is crucial to suppress centriole amplification in S phase (PMID:27065328)
- The centriole protein CEP76 negatively regulates PLK1 activity in the cytoplasm for proper mitotic progression. (PMID:32878946)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cep76 | ENSDARG00000058319 |
| mus_musculus | Cep76 | ENSMUSG00000073542 |
| rattus_norvegicus | Cep76 | ENSRNOG00000021918 |
| drosophila_melanogaster | Cc2d2a | FBGN0263113 |
| caenorhabditis_elegans | mks-6 | WBGENE00010642 |
Paralogs (2): CC2D2A (ENSG00000048342), CC2D2B (ENSG00000188649)
Protein
Protein identifiers
Centrosomal protein of 76 kDa — Q8TAP6 (reviewed: Q8TAP6)
All UniProt accessions (6): Q8TAP6, B4DP81, K7EII2, K7EIV8, K7EP44, K7EPF5
UniProt curated annotations — full annotation on UniProt →
Function. Centrosomal protein involved in regulation of centriole duplication. Required to limit centriole duplication to once per cell cycle by preventing centriole reduplication.
Subunit / interactions. Interacts with CCP110 and CEP97.
Subcellular location. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome. Centriole.
Similarity. Belongs to the CEP76 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8TAP6-1 | 1 | yes |
| Q8TAP6-2 | 2 | |
| Q8TAP6-3 | 3 |
RefSeq proteins (2): NP_001258918, NP_079175* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR028926 | CEP76-C2 | Domain |
| IPR038765 | Papain-like_cys_pep_sf | Homologous_superfamily |
| IPR052299 | CEP76 | Family |
| IPR056288 | CEP76_C | Domain |
| IPR056289 | CEP76_N | Domain |
| IPR056290 | CEPT76/DRC7_peptidase-like_dom | Domain |
Pfam: PF15627, PF24652, PF24654, PF24656
UniProt features (9 total): splice variant 4, modified residue 2, sequence conflict 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8TAP6-F1 | 87.18 | 0.69 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 75, 83
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-2565942 | Regulation of PLK1 Activity at G2/M Transition |
| R-HSA-380259 | Loss of Nlp from mitotic centrosomes |
| R-HSA-380270 | Recruitment of mitotic centrosome proteins and complexes |
| R-HSA-380284 | Loss of proteins required for interphase microtubule organization from the centrosome |
| R-HSA-380320 | Recruitment of NuMA to mitotic centrosomes |
| R-HSA-5620912 | Anchoring of the basal body to the plasma membrane |
| R-HSA-8854518 | AURKA Activation by TPX2 |
| R-HSA-1640170 | Cell Cycle |
| R-HSA-1852241 | Organelle biogenesis and maintenance |
| R-HSA-380287 | Centrosome maturation |
| R-HSA-453274 | Mitotic G2-G2/M phases |
| R-HSA-5617833 | Cilium Assembly |
| R-HSA-68877 | Mitotic Prometaphase |
| R-HSA-68886 | M Phase |
| R-HSA-69275 | G2/M Transition |
| R-HSA-69278 | Cell Cycle, Mitotic |
MSigDB gene sets: 152 (showing top):
GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, GCM_ZNF198, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_REGULATION_OF_CENTRIOLE_REPLICATION, GOBP_CENTRIOLE_ASSEMBLY, MODULE_205, GOBP_REGULATION_OF_CELL_CYCLE, GOCC_CENTROSOME, GOBP_REGULATION_OF_CENTROSOME_CYCLE, GOBP_ORGANELLE_ASSEMBLY, TIEN_INTESTINE_PROBIOTICS_24HR_UP, GOBP_REGULATION_OF_ORGANELLE_ASSEMBLY, GOBP_REGULATION_OF_CELL_CYCLE_PROCESS, GOBP_CENTROSOME_DUPLICATION
GO Biological Process (1): regulation of centriole replication (GO:0046599)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (6): centrosome (GO:0005813), centriole (GO:0005814), cytosol (GO:0005829), protein-containing complex (GO:0032991), cytoplasm (GO:0005737), cytoskeleton (GO:0005856)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| G2/M Transition | 3 |
| Centrosome maturation | 2 |
| Cell Cycle, Mitotic | 2 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 1 |
| Mitotic Prometaphase | 1 |
| Assembly of the 9+0 primary cilium | 1 |
| Organelle biogenesis and maintenance | 1 |
| M Phase | 1 |
| Mitotic G2-G2/M phases | 1 |
| Cell Cycle | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| microtubule organizing center | 2 |
| intracellular membraneless organelle | 2 |
| cellular anatomical structure | 2 |
| centriole replication | 1 |
| regulation of centrosome duplication | 1 |
| regulation of organelle assembly | 1 |
| binding | 1 |
| centriole | 1 |
| cytoplasm | 1 |
| cellular_component | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
994 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CEP76 | CCP110 | O43303 | 760 |
| CEP76 | SASS6 | Q6UVJ0 | 636 |
| CEP76 | POC5 | Q8NA72 | 636 |
| CEP76 | CCDC14 | Q49A88 | 618 |
| CEP76 | CEP120 | Q8N960 | 618 |
| CEP76 | CEP135 | Q66GS9 | 605 |
| CEP76 | CEP63 | Q96MT8 | 591 |
| CEP76 | CEP164 | Q9UPV0 | 558 |
| CEP76 | PLK4 | O00444 | 557 |
| CEP76 | TSSC4 | Q9Y5U2 | 549 |
| CEP76 | SPATC1 | Q76KD6 | 547 |
| CEP76 | SEH1L | Q96EE3 | 547 |
| CEP76 | CEP192 | Q8TEP8 | 526 |
| CEP76 | CEP89 | Q96ST8 | 523 |
| CEP76 | STIL | Q15468 | 515 |
IntAct
484 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CEP290 | CCP110 | psi-mi:“MI:2364”(proximity) | 0.890 |
| RPL9 | DHPS | psi-mi:“MI:0914”(association) | 0.870 |
| CEP76 | RPL9 | psi-mi:“MI:0915”(physical association) | 0.830 |
| CEP76 | CABP5 | psi-mi:“MI:0915”(physical association) | 0.830 |
| CABP5 | CEP76 | psi-mi:“MI:0915”(physical association) | 0.830 |
| CEP76 | CRYBA4 | psi-mi:“MI:0915”(physical association) | 0.780 |
| CEP76 | KIAA1143 | psi-mi:“MI:0915”(physical association) | 0.780 |
| CRYBA4 | CEP76 | psi-mi:“MI:0915”(physical association) | 0.780 |
| CEP76 | DZIP1L | psi-mi:“MI:0915”(physical association) | 0.740 |
| DZIP1L | CEP76 | psi-mi:“MI:0915”(physical association) | 0.740 |
| CEP76 | ZBTB24 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CEP76 | AKAP7 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CEP76 | PIN1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| C22orf39 | CEP76 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CEP76 | FAM90A1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| TTC21A | CEP76 | psi-mi:“MI:0915”(physical association) | 0.720 |
BioGRID (281): CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid), CEP76 (Two-hybrid)
ESM2 similar proteins: A0JN62, A2RT67, A2RUS2, A2VDU2, A4IFB6, A4IIM3, A7MBL8, B1H2P5, B4F779, O94967, P48553, Q08CL8, Q0VEJ0, Q14161, Q15650, Q3TLI0, Q4R350, Q5RAQ5, Q5RCP7, Q5RDV5, Q5TKA1, Q5XIA4, Q5ZIW2, Q5ZJK1, Q68CZ1, Q6AYF1, Q6QD73, Q7TSG1, Q7ZYH1, Q8BH15, Q8BIK4, Q8BKH7, Q8C735, Q8CG73, Q8CGF6, Q8IWR0, Q8IZQ1, Q8N6S4, Q8N960, Q8NEU8
Diamond homologs: A7E2V1, Q0V9S9, Q0VEJ0, Q28DH9, Q5RCP7, Q6DDX8, Q8I4Z1, Q8TAP6
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CyclinA2/CDK2 | “down-regulates activity” | CEP76 | phosphorylation |
| CEP76 | “down-regulates activity” | PLK1 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 73 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cilium assembly | 6 | 9.0× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
111 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 10 |
| Uncertain significance | 73 |
| Likely benign | 3 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (12)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4075828 | NM_024899.4(CEP76):c.307C>T (p.Pro103Ser) | Pathogenic |
| 4075833 | NM_024899.4(CEP76):c.1122G>A (p.Lys374=) | Pathogenic |
| 4075827 | NM_024899.4(CEP76):c.497T>C (p.Leu166Pro) | Likely pathogenic |
| 4075829 | NM_024899.4(CEP76):c.903_904del (p.His301fs) | Likely pathogenic |
| 4075830 | NM_024899.4(CEP76):c.1703G>C (p.Arg568Pro) | Likely pathogenic |
| 4075831 | NM_024899.4(CEP76):c.1520_1521insT (p.Leu508fs) | Likely pathogenic |
| 4075832 | NM_024899.4(CEP76):c.71T>A (p.Val24Asp) | Likely pathogenic |
| 4075834 | NM_024899.4(CEP76):c.302T>C (p.Ile101Thr) | Likely pathogenic |
| 4075835 | NM_024899.4(CEP76):c.793G>A (p.Val265Met) | Likely pathogenic |
| 4075837 | NM_024899.4(CEP76):c.868TGG[1] (p.Trp291del) | Likely pathogenic |
| 4075838 | NM_024899.4(CEP76):c.1432T>C (p.Cys478Arg) | Likely pathogenic |
| 599568 | NM_024899.4(CEP76):c.1874G>A (p.Arg625His) | Likely pathogenic |
SpliceAI
2078 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:12673499:GAGAT:G | acceptor_gain | 1.0000 |
| 18:12673501:GAT:G | acceptor_gain | 1.0000 |
| 18:12673502:ATCT:A | acceptor_loss | 1.0000 |
| 18:12673503:TC:T | acceptor_loss | 1.0000 |
| 18:12673504:C:CC | acceptor_gain | 1.0000 |
| 18:12673506:A:C | acceptor_gain | 1.0000 |
| 18:12673508:T:C | acceptor_gain | 1.0000 |
| 18:12673508:T:TC | acceptor_gain | 1.0000 |
| 18:12674530:CCTTA:C | donor_loss | 1.0000 |
| 18:12674531:CTTAC:C | donor_loss | 1.0000 |
| 18:12674532:TTAC:T | donor_loss | 1.0000 |
| 18:12674534:A:AC | donor_gain | 1.0000 |
| 18:12674534:A:C | donor_loss | 1.0000 |
| 18:12674535:C:CC | donor_gain | 1.0000 |
| 18:12674535:CCGAA:C | donor_loss | 1.0000 |
| 18:12674749:AGATC:A | acceptor_gain | 1.0000 |
| 18:12674750:GATC:G | acceptor_gain | 1.0000 |
| 18:12674751:ATC:A | acceptor_gain | 1.0000 |
| 18:12674752:TC:T | acceptor_gain | 1.0000 |
| 18:12674752:TCC:T | acceptor_loss | 1.0000 |
| 18:12674753:CC:C | acceptor_gain | 1.0000 |
| 18:12674754:C:CA | acceptor_loss | 1.0000 |
| 18:12674754:C:CC | acceptor_gain | 1.0000 |
| 18:12674754:C:T | acceptor_gain | 1.0000 |
| 18:12674755:T:G | acceptor_loss | 1.0000 |
| 18:12674756:A:C | acceptor_gain | 1.0000 |
| 18:12674761:C:CT | acceptor_gain | 1.0000 |
| 18:12674762:A:T | acceptor_gain | 1.0000 |
| 18:12674765:C:CT | acceptor_gain | 1.0000 |
| 18:12674766:A:T | acceptor_gain | 1.0000 |
AlphaMissense
4263 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:12674732:A:G | W549R | 1.000 |
| 18:12674732:A:T | W549R | 1.000 |
| 18:12678270:A:G | W488R | 1.000 |
| 18:12678270:A:T | W488R | 1.000 |
| 18:12691424:A:G | W290R | 1.000 |
| 18:12691424:A:T | W290R | 1.000 |
| 18:12697286:A:G | W215R | 1.000 |
| 18:12697286:A:T | W215R | 1.000 |
| 18:12673390:G:T | A652D | 0.999 |
| 18:12673403:A:G | W648R | 0.999 |
| 18:12673403:A:T | W648R | 0.999 |
| 18:12673444:C:G | R634P | 0.999 |
| 18:12673447:A:T | V633D | 0.999 |
| 18:12673450:G:T | A632E | 0.999 |
| 18:12674587:G:T | P597Q | 0.999 |
| 18:12674593:C:T | G595E | 0.999 |
| 18:12674594:C:A | G595W | 0.999 |
| 18:12674594:C:G | G595R | 0.999 |
| 18:12674594:C:T | G595R | 0.999 |
| 18:12674595:T:A | K594N | 0.999 |
| 18:12674595:T:G | K594N | 0.999 |
| 18:12674598:A:C | F593L | 0.999 |
| 18:12674598:A:T | F593L | 0.999 |
| 18:12674599:A:G | F593S | 0.999 |
| 18:12674600:A:G | F593L | 0.999 |
| 18:12674640:A:C | F579L | 0.999 |
| 18:12674640:A:T | F579L | 0.999 |
| 18:12674641:A:G | F579S | 0.999 |
| 18:12674642:A:G | F579L | 0.999 |
| 18:12674695:A:C | L561W | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000071999 (18:12700636 A>G,T), RS1000113143 (18:12663052 A>G), RS1000163509 (18:12686812 T>C,G), RS1000207842 (18:12694231 G>T), RS1000427961 (18:12670272 G>A,C), RS1000482057 (18:12688849 T>C), RS1000503794 (18:12664969 C>T), RS1000567972 (18:12666424 C>A), RS1000572099 (18:12683705 C>A), RS1000603350 (18:12688603 T>C), RS1000603463 (18:12704171 A>G), RS1000711602 (18:12670813 A>G), RS1000743019 (18:12670586 A>G), RS1000758121 (18:12670018 G>A,T), RS1000866502 (18:12703878 A>T)
Disease associations
OMIM: gene MIM:620791 | disease phenotypes: MIM:268000, MIM:213300, MIM:209900
GenCC curated gene-disease
Mondo (3): retinitis pigmentosa (MONDO:0019200), Joubert syndrome 1 (MONDO:0008944), Bardet-Biedl syndrome 1 (MONDO:0008854)
Orphanet (1): Retinitis pigmentosa (Orphanet:791)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
| C537909 | Bardet-Biedl syndrome 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
34 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, decreases methylation | 5 |
| Aflatoxin B1 | affects expression, increases expression, increases methylation | 5 |
| Air Pollutants | affects expression, increases abundance, decreases expression | 2 |
| Tretinoin | decreases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| trichostatin A | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| periodate-oxidized adenosine | affects expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| coumarin | decreases phosphorylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| K 7174 | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Amphotericin B | decreases expression | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ozone | increases abundance, affects expression | 1 |
| Progesterone | increases expression | 1 |
| Urethane | increases expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | increases expression | 1 |
Clinical trials (associated diseases)
235 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00717080 | PHASE4 | COMPLETED | The Role of Capsular Tension Ring (CTR) in Anterior Capsular Contraction |
| NCT00000114 | PHASE3 | COMPLETED | Randomized Trial of Vitamin A and Vitamin E Supplementation for Retinitis Pigmentosa |
| NCT00000116 | PHASE3 | COMPLETED | Randomized Trial of DHA for Retinitis Pigmentosa Patients Receiving Vitamin A |
| NCT00346333 | PHASE3 | COMPLETED | Clinical Trial of Lutein for Patients With Retinitis Pigmentosa Receiving Vitamin A |
| NCT01786395 | PHASE3 | TERMINATED | Phase III Efficacy and Safety Clinical Study of UF-021 for Treatment of Retinitis Pigmentosa |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT04636853 | PHASE3 | COMPLETED | CB-PRP in Retinitis Pigmentosa and Dry Age-related Macular Degeneration |
| NCT05537220 | PHASE3 | ACTIVE_NOT_RECRUITING | Oral N-acetylcysteine for Retinitis Pigmentosa |
| NCT05800301 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa Via Combination of Wharton’s Jelly-derived Mesenchymal Stem Cells and Magnovision |
| NCT05926583 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AAV5-hRKp.RPGR for the Treatment of Japanese Participants With X-linked Retinitis Pigmentosa |
| NCT06388200 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3 Study Of OCU400 Gene Therapy for the Treatment Of Retinitis Pigmentosa |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT00100230 | PHASE2 | COMPLETED | DHA and X-Linked Retinitis Pigmentosa |
| NCT00447980 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Participants With Early Stage Retinitis Pigmentosa |
| NCT00447993 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Patients With Late Stage Retinitis Pigmentosa |
| NCT01233609 | PHASE2 | COMPLETED | Trial of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01399515 | PHASE2 | COMPLETED | Efficacy and Safety of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01530659 | PHASE2 | COMPLETED | Retinal Imaging in CNTF -Releasing Encapsulated Cell Implant Treated Patients for Early-stage Retinitis Pigmentosa |
| NCT01560715 | PHASE2 | COMPLETED | Autologous Bone Marrow-Derived Stem Cells Transplantation For Retinitis Pigmentosa |
| NCT02609165 | PHASE2 | COMPLETED | Nerve Growth Factor Eye Drops Treatment in Patients With Retinitis Pigmentosa and Cystoid Macular Edema |
| NCT02661711 | PHASE2 | COMPLETED | Aflibercept for Macular Oedema With Underlying Retinitis Pigmentosa (AMOUR) Study |
| NCT02804360 | PHASE2 | UNKNOWN | Intravitreal Dexamethasone Implant in Retinitis Pigmentosa-related Macular Edema- a Retrospective Study |
| NCT02837640 | PHASE2 | UNKNOWN | Studying a Potential Protective Effect of L-Dopa on Retinitis Pigmentosa |
| NCT03073733 | PHASE2 | COMPLETED | Safety and Efficacy of Intravitreal Injection of Human Retinal Progenitor Cells in Adults With Retinitis Pigmentosa |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04356716 | PHASE2 | COMPLETED | Sildenafil for Treatment of Choroidal Ischemia |
| NCT04604899 | PHASE2 | COMPLETED | Safety of Repeat Intravitreal Injection of Human Retinal Progenitor Cells (jCell) in Adult Subjects With Retinitis Pigmentosa |
| NCT04763369 | PHASE2 | UNKNOWN | Investigation of Therapeutic Efficacy and Safety of UMSCs for the Management of Retinitis Pigmentosa (RP) |
| NCT04864496 | PHASE2 | UNKNOWN | Effects of Treatment With N- Acetylcysteine on Visual Outcomes in Patients With Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT05085964 | PHASE2 | TERMINATED | An Open-Label Extension Study to Evaluate Safety & Tolerability of QR-421a in Subjects With Retinitis Pigmentosa |
| NCT05392179 | PHASE2 | COMPLETED | A Study in Subjects With Retinitis Pigmentosa |
| NCT06627179 | PHASE2 | RECRUITING | Study to Evaluate Ultevursen in Subjects With Retinitis Pigmentosa (RP) Due to Mutations in Exon 13 of the USH2A Gene |
| NCT06628947 | PHASE2 | RECRUITING | A Phase II Study of Intravitreal KIO-301 in Patients With Late-stage Retinitis Pigmentosa |
| NCT06912633 | PHASE2 | RECRUITING | Safety of a Single, Intravitreal Injection of 6.0M jCell (Famzeretcel) in Retinitis Pigmentosa (RP) |
| NCT00063765 | PHASE1 | COMPLETED | Evaluation of Safety of Ciliary Neurotrophic Factor Implants in the Eye |
| NCT00065455 | PHASE1 | COMPLETED | Investigating the Effect of Vitamin A Supplementation on Retinitis Pigmentosa |
| NCT00458575 | PHASE1 | TERMINATED | A Study to Evaluate the Safety of CNTO 2476 in Patients With Advanced Retinitis Pigmentosa |
| NCT01068561 | PHASE1 | COMPLETED | Autologous Bone Marrow-Derived Stem Cells Transplantation For Retinitis Pigmentosa |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Bardet-Biedl syndrome 1, Joubert syndrome 1