CFAP100-DT

Summary

CFAP100-DT (CFAP100 divergent transcript, HGNC:49641) is a long non-coding RNA gene on chromosome 3q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49641
Approved symbol	CFAP100-DT
Name	CFAP100 divergent transcript
Location	3q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249833
Ensembl biotype	lncRNA
Entrez	100506907
RNAcentral	URS000075D610 — lncRNA, 947 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000505467, ENST00000506660, ENST00000511287, ENST00000652761, ENST00000656710, ENST00000663827, ENST00000666570, ENST00000843755, ENST00000843756, ENST00000843757, ENST00000843758, ENST00000843759, ENST00000843760, ENST00000843761, ENST00000843762, ENST00000843763, ENST00000843764

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505467 — 2 exons

Exon	Start	End
ENSE00002059015	126393033	126393293
ENSE00002087579	126394476	126394588

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 99.02.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0234 / max 16.5354, expressed in 3 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
44338	0.0118	3
44339	0.0116	3

Top tissues by expression

210 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	99.02	gold quality
left testis	UBERON:0004533	96.20	gold quality
right testis	UBERON:0004534	95.74	gold quality
testis	UBERON:0000473	93.12	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.70	gold quality
adult organism	UBERON:0007023	81.80	gold quality
upper arm skin	UBERON:0004263	74.82	gold quality
kidney epithelium	UBERON:0004819	73.47	gold quality
nasal cavity epithelium	UBERON:0005384	72.65	gold quality
cerebellar vermis	UBERON:0004720	69.61	gold quality
epithelial cell of pancreas	CL:0000083	69.25	gold quality
left ventricle myocardium	UBERON:0006566	67.82	gold quality
pancreatic ductal cell	CL:0002079	67.45	silver quality
cardiac muscle of right atrium	UBERON:0003379	66.95	gold quality
quadriceps femoris	UBERON:0001377	66.59	gold quality
myocardium	UBERON:0002349	66.57	gold quality
islet of Langerhans	UBERON:0000006	66.46	gold quality
deltoid	UBERON:0001476	66.01	gold quality
heart right ventricle	UBERON:0002080	65.01	gold quality
vastus lateralis	UBERON:0001379	64.68	gold quality
lateral nuclear group of thalamus	UBERON:0002736	64.41	gold quality
tibialis anterior	UBERON:0001385	64.15	silver quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	63.97	gold quality
body of tongue	UBERON:0011876	63.77	gold quality
substantia nigra pars compacta	UBERON:0001965	62.93	gold quality
gingival epithelium	UBERON:0001949	62.14	gold quality
endothelial cell	CL:0000115	61.80	gold quality
gingiva	UBERON:0001828	61.74	gold quality
skeletal muscle tissue	UBERON:0001134	61.43	gold quality
substantia nigra pars reticulata	UBERON:0001966	61.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.