CFAP20-AS1

Summary

CFAP20-AS1 (CFAP20 antisense RNA 1, HGNC:58532) is a long non-coding RNA gene on chromosome 16q21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58532
Approved symbol	CFAP20-AS1
Name	CFAP20 antisense RNA 1
Location	16q21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260545
Ensembl biotype	lncRNA
Entrez	142592831

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000564672

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000564672 — 2 exons

Exon	Start	End
ENSE00002583743	58119133	58119353
ENSE00002602527	58116885	58117078

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 79.89.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	79.89	gold quality
colonic epithelium	UBERON:0000397	72.60	gold quality
corpus callosum	UBERON:0002336	70.69	gold quality
ganglionic eminence	UBERON:0004023	68.78	gold quality
bone marrow	UBERON:0002371	68.72	gold quality
bone marrow cell	CL:0002092	68.13	silver quality
stromal cell of endometrium	CL:0002255	66.75	gold quality
right lobe of liver	UBERON:0001114	65.68	gold quality
liver	UBERON:0002107	64.86	gold quality
right uterine tube	UBERON:0001302	64.72	gold quality
mucosa of stomach	UBERON:0001199	64.58	gold quality
granulocyte	CL:0000094	63.63	gold quality
skeletal muscle tissue	UBERON:0001134	63.51	gold quality
monocyte	CL:0000576	62.57	gold quality
skin of abdomen	UBERON:0001416	62.10	gold quality
cortex of kidney	UBERON:0001225	60.93	gold quality
mucosa of transverse colon	UBERON:0004991	60.64	gold quality
vermiform appendix	UBERON:0001154	60.55	gold quality
superior frontal gyrus	UBERON:0002661	60.29	gold quality
zone of skin	UBERON:0000014	60.02	gold quality
pituitary gland	UBERON:0000007	60.01	gold quality
left ovary	UBERON:0002119	59.89	gold quality
gall bladder	UBERON:0002110	59.75	gold quality
islet of Langerhans	UBERON:0000006	59.57	gold quality
prefrontal cortex	UBERON:0000451	59.44	gold quality
ovary	UBERON:0000992	59.41	gold quality
tibial nerve	UBERON:0001323	59.25	gold quality
urinary bladder	UBERON:0001255	59.20	gold quality
endometrium	UBERON:0001295	59.14	gold quality
left lobe of thyroid gland	UBERON:0001120	59.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.