CFAP20DC-AS1

Summary

CFAP20DC-AS1 (CFAP20DC antisense RNA 1, HGNC:41063) is a long non-coding RNA gene on chromosome 3p14.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41063
Approved symbol	CFAP20DC-AS1
Name	CFAP20DC antisense RNA 1
Location	3p14.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242428
Ensembl biotype	lncRNA
Entrez	101929238
RNAcentral	URS00002BB309 — lncRNA, 2203 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000463703, ENST00000482372, ENST00000492031, ENST00000493123, ENST00000662588, ENST00000666146, ENST00000783863, ENST00000783864

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000463703 — 4 exons

Exon	Start	End
ENSE00001824260	58866542	58866636
ENSE00001886100	58970358	58971880
ENSE00001949554	58824471	58824575
ENSE00001951878	58914873	58914931

Expression profiles

Bgee: expression breadth broad, 77 present calls, max score 65.79.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2586 / max 114.8289, expressed in 71 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
37059	0.2586	71

Top tissues by expression

77 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	65.79	gold quality
skeletal muscle tissue	UBERON:0001134	64.06	silver quality
nucleus accumbens	UBERON:0001882	63.65	gold quality
prefrontal cortex	UBERON:0000451	63.58	gold quality
superior frontal gyrus	UBERON:0002661	62.55	gold quality
anterior cingulate cortex	UBERON:0009835	60.38	gold quality
frontal cortex	UBERON:0001870	60.22	gold quality
putamen	UBERON:0001874	59.93	gold quality
tonsil	UBERON:0002372	59.87	silver quality
caudate nucleus	UBERON:0001873	59.47	gold quality
cerebral cortex	UBERON:0000956	58.59	gold quality
right hemisphere of cerebellum	UBERON:0014890	58.38	gold quality
primary visual cortex	UBERON:0002436	58.20	gold quality
amygdala	UBERON:0001876	57.53	gold quality
brain	UBERON:0000955	57.48	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.31	gold quality
cerebellar hemisphere	UBERON:0002245	56.90	gold quality
Brodmann (1909) area 9	UBERON:0013540	56.77	gold quality
right frontal lobe	UBERON:0002810	55.12	gold quality
monocyte	CL:0000576	55.09	gold quality
Ammon’s horn	UBERON:0001954	54.95	gold quality
blood	UBERON:0000178	54.88	gold quality
cortical plate	UBERON:0005343	53.89	silver quality
multicellular organism	UBERON:0000468	52.60	gold quality
muscle of leg	UBERON:0001383	52.56	silver quality
adult mammalian kidney	UBERON:0000082	51.77	silver quality
adenohypophysis	UBERON:0002196	51.61	gold quality
pituitary gland	UBERON:0000007	51.45	gold quality
heart left ventricle	UBERON:0002084	51.26	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	51.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.