CFAP20DC-DT

Summary

CFAP20DC-DT (CFAP20DC divergent transcript, HGNC:55618) is a long non-coding RNA gene on chromosome 3p14.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55618
Approved symbol	CFAP20DC-DT
Name	CFAP20DC divergent transcript
Location	3p14.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243295
Ensembl biotype	lncRNA
Entrez	105377110
RNAcentral	URS0000EEF28E — lncRNA, 1642 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000487624, ENST00000655190, ENST00000659086, ENST00000660278, ENST00000661035, ENST00000663318, ENST00000664511, ENST00000665883, ENST00000668131, ENST00000668989, ENST00000670321, ENST00000726402, ENST00000726403, ENST00000726404, ENST00000726405, ENST00000726406, ENST00000726407, ENST00000765324, ENST00000765325, ENST00000765326, ENST00000765327, ENST00000765328, ENST00000765329

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000487624 — 2 exons

Exon	Start	End
ENSE00004050913	59064975	59065266
ENSE00004050917	59118946	59119525

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 79.66.

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.66	gold quality
muscle tissue	UBERON:0002385	70.88	gold quality
ventricular zone	UBERON:0003053	61.50	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.82	silver quality
testis	UBERON:0000473	59.47	gold quality
left testis	UBERON:0004533	58.60	gold quality
right testis	UBERON:0004534	58.22	gold quality
stomach	UBERON:0000945	54.27	gold quality
body of stomach	UBERON:0001161	54.02	gold quality
bone marrow	UBERON:0002371	53.25	silver quality
monocyte	CL:0000576	52.20	gold quality
prefrontal cortex	UBERON:0000451	52.18	gold quality
lymph node	UBERON:0000029	52.09	gold quality
urinary bladder	UBERON:0001255	51.54	gold quality
blood	UBERON:0000178	50.64	gold quality
islet of Langerhans	UBERON:0000006	49.72	gold quality
corpus callosum	UBERON:0002336	49.45	gold quality
cortex of kidney	UBERON:0001225	49.34	gold quality
fundus of stomach	UBERON:0001160	49.05	gold quality
lung	UBERON:0002048	48.90	gold quality
endometrium	UBERON:0001295	48.66	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.15	gold quality
superior frontal gyrus	UBERON:0002661	48.04	silver quality
muscle of leg	UBERON:0001383	47.33	silver quality
gall bladder	UBERON:0002110	47.08	gold quality
gastrocnemius	UBERON:0001388	46.98	silver quality
right adrenal gland cortex	UBERON:0035827	46.77	gold quality
multicellular organism	UBERON:0000468	46.35	gold quality
frontal cortex	UBERON:0001870	46.06	gold quality
vermiform appendix	UBERON:0001154	45.80	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.