CFAP300
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Also known as MGC13040FBB5DNAAF17
Summary
CFAP300 (cilia and flagella associated protein 300, HGNC:28188) is a protein-coding gene on chromosome 11q22.1, encoding Cilia- and flagella-associated protein 300 (Q9BRQ4). Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility.
Predicted to be located in cytoplasm and motile cilium. Implicated in primary ciliary dyskinesia 38.
Source: NCBI Gene 85016 — RefSeq curated summary.
At a glance
- Gene–disease (curated): ciliary dyskinesia, primary, 38 (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 2
- Clinical variants (ClinVar): 123 total — 13 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 55
- MANE Select transcript:
NM_032930
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28188 |
| Approved symbol | CFAP300 |
| Name | cilia and flagella associated protein 300 |
| Location | 11q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC13040, FBB5, DNAAF17 |
| Ensembl gene | ENSG00000137691 |
| Ensembl biotype | protein_coding |
| OMIM | 618058 |
| Entrez | 85016 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 7 protein_coding, 1 retained_intron
ENST00000434758, ENST00000526781, ENST00000529204, ENST00000530659, ENST00000534360, ENST00000879551, ENST00000920394, ENST00000953524
RefSeq mRNA: 3 — MANE Select: NM_032930
NM_001195005, NM_001363505, NM_032930
CCDS: CCDS53698, CCDS8313
Canonical transcript exons
ENST00000434758 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001423677 | 102083071 | 102084554 |
| ENSE00001610968 | 102047815 | 102047896 |
| ENSE00002189005 | 102047437 | 102047580 |
| ENSE00003476695 | 102081215 | 102081281 |
| ENSE00003513527 | 102066485 | 102066651 |
| ENSE00003527159 | 102058880 | 102058955 |
| ENSE00003593002 | 102075873 | 102076045 |
Expression profiles
Bgee: expression breadth ubiquitous, 181 present calls, max score 99.05.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.6775 / max 177.7275, expressed in 1149 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 116379 | 5.5241 | 1145 |
| 116378 | 0.1534 | 44 |
Top tissues by expression
247 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bronchial epithelial cell | CL:0002328 | 99.05 | gold quality |
| bronchus | UBERON:0002185 | 98.05 | gold quality |
| sperm | CL:0000019 | 95.49 | gold quality |
| right uterine tube | UBERON:0001302 | 93.54 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 93.02 | gold quality |
| adult organism | UBERON:0007023 | 91.28 | gold quality |
| left testis | UBERON:0004533 | 90.97 | gold quality |
| right testis | UBERON:0004534 | 90.80 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 90.21 | gold quality |
| testis | UBERON:0000473 | 89.87 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 89.49 | gold quality |
| oviduct epithelium | UBERON:0004804 | 87.93 | gold quality |
| caput epididymis | UBERON:0004358 | 86.34 | gold quality |
| fallopian tube | UBERON:0003889 | 85.31 | gold quality |
| ventricular zone | UBERON:0003053 | 85.29 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.26 | gold quality |
| calcaneal tendon | UBERON:0003701 | 83.59 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 81.95 | gold quality |
| adenohypophysis | UBERON:0002196 | 79.21 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 78.94 | gold quality |
| endocervix | UBERON:0000458 | 77.97 | gold quality |
| ganglionic eminence | UBERON:0004023 | 77.70 | gold quality |
| islet of Langerhans | UBERON:0000006 | 77.63 | gold quality |
| pituitary gland | UBERON:0000007 | 77.18 | gold quality |
| right adrenal gland | UBERON:0001233 | 75.69 | gold quality |
| cauda epididymis | UBERON:0004360 | 75.30 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 75.23 | gold quality |
| trachea | UBERON:0003126 | 75.17 | gold quality |
| stromal cell of endometrium | CL:0002255 | 75.04 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 74.26 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 483.20 |
| E-MTAB-9388 | yes | 7.17 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
62 targeting CFAP300, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-101-3P | 99.94 | 75.03 | 2230 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-4802-3P | 99.72 | 70.13 | 1273 |
| HSA-MIR-518A-5P | 99.70 | 69.01 | 2209 |
| HSA-MIR-527 | 99.70 | 69.01 | 2209 |
| HSA-MIR-1251-3P | 99.64 | 67.21 | 1408 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-7159-3P | 99.51 | 70.17 | 1920 |
| HSA-MIR-12117 | 99.50 | 67.57 | 868 |
| HSA-MIR-21-5P | 99.46 | 70.54 | 1035 |
Literature-anchored findings (GeneRIF, showing 2)
- C11orf70 is essential for assembly of dynein arms and C11orf70 mutations cause defective cilia motility and Primary ciliary dyskinesia. (PMID:29727692)
- C11orf70 is a preassembly factor involved in the pathogenesis of Primary ciliary dyskinesia. (PMID:29727693)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cfap300 | ENSDARG00000000349 |
| mus_musculus | Cfap300 | ENSMUSG00000053070 |
| rattus_norvegicus | Cfap300 | ENSRNOG00000043410 |
Protein
Protein identifiers
Cilia- and flagella-associated protein 300 — Q9BRQ4 (reviewed: Q9BRQ4)
All UniProt accessions (3): Q9BRQ4, E9PM77, H0YCT8
UniProt curated annotations — full annotation on UniProt →
Function. Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. May play a role in outer and inner dynein arm assembly.
Subunit / interactions. Interacts with DNAAF2.
Subcellular location. Cytoplasm. Cytoskeleton. Cilium axoneme.
Tissue specificity. Expressed in nasal epithelial cells.
Disease relevance. Ciliary dyskinesia, primary, 38 (CILD38) [MIM:618063] A form of primary ciliary dyskinesia, a disorder characterized by abnormalities of motile cilia. Respiratory infections leading to chronic inflammation and bronchiectasis are recurrent, due to defects in the respiratory cilia. Some patients exhibit randomization of left-right body asymmetry and situs inversus. Primary ciliary dyskinesia associated with situs inversus is referred to as Kartagener syndrome. CILD38 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry.
Induction. Up-regulated during ciliogenesis.
Similarity. Belongs to the CFAP300 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BRQ4-1 | 1 | yes |
| Q9BRQ4-2 | 2 | |
| Q9BRQ4-3 | 3 |
RefSeq proteins (3): NP_001181934, NP_001350434, NP_116319* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR029416 | CFAP300 | Family |
Pfam: PF14926
UniProt features (9 total): sequence variant 4, splice variant 3, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BRQ4-F1 | 94.21 | 0.92 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 148 (showing top):
chr11q22, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN, GOCC_CYTOPLASMIC_REGION, NUYTTEN_EZH2_TARGETS_DN, GOCC_MOTILE_CILIUM, GOCC_CILIUM, DODD_NASOPHARYNGEAL_CARCINOMA_DN, GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN, ZNF257_TARGET_GENES, MIR3646, MIR10527_5P, MIR4307, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_2, MIR6508_5P, MIR380_3P
GO Biological Process (0):
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): cytoplasm (GO:0005737), axoneme (GO:0005930), motile cilium (GO:0031514), cytoskeleton (GO:0005856), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cytoskeleton | 1 |
| microtubule | 1 |
| ciliary plasm | 1 |
| cilium | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
716 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CFAP300 | CFAP298 | P57076 | 735 |
| CFAP300 | DNAAF5 | Q86Y56 | 693 |
| CFAP300 | DNAAF6 | Q9NQM4 | 672 |
| CFAP300 | DNAAF3 | Q8N9W5 | 659 |
| CFAP300 | DNAAF11 | Q86X45 | 633 |
| CFAP300 | SPAG1 | Q07617 | 627 |
| CFAP300 | DNAAF1 | Q8NEP3 | 614 |
| CFAP300 | PIH1D2 | Q8WWB5 | 591 |
| CFAP300 | DNAAF19 | Q8IW40 | 587 |
| CFAP300 | ZMYND10 | O75800 | 582 |
| CFAP300 | DNAAF2 | Q9NVR5 | 582 |
| CFAP300 | DNAAF4 | Q8WXU2 | 577 |
| CFAP300 | TTC12 | Q9H892 | 575 |
| CFAP300 | LRRC56 | Q8IYG6 | 569 |
| CFAP300 | DNAAF10 | Q96MX6 | 542 |
| CFAP300 | DNALI1 | O14645 | 542 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFAP300 | H4C16 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CFAP300 | H2AC12 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CFAP300 | ACTA2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| COPS5 | FBLL1 | psi-mi:“MI:0914”(association) | 0.350 |
| CUL2 | ANXA2P2 | psi-mi:“MI:0914”(association) | 0.350 |
| CUL3 | PXDNL | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (14): C11orf70 (Affinity Capture-MS), CCT6B (Affinity Capture-MS), TPM2 (Affinity Capture-MS), TAB1 (Affinity Capture-MS), TPM2 (Affinity Capture-MS), CCT3 (Affinity Capture-MS), C11orf70 (Biochemical Activity), C11orf70 (Proximity Label-MS), C11orf70 (Proximity Label-MS), C11orf70 (Affinity Capture-RNA), ACTA2 (Affinity Capture-MS), C11orf70 (Affinity Capture-MS), C11orf70 (Affinity Capture-MS), C11orf70 (Affinity Capture-MS)
ESM2 similar proteins: A5D9C6, A8IYS6, B3MJV4, B4GH42, B4MV81, B4Q9T2, B5E0H4, F1QJX5, O08576, O14109, O60268, P43125, P69735, Q08E29, Q17QK1, Q2HJH8, Q3B7K9, Q3V0G7, Q54Y76, Q59EK9, Q5I0R4, Q5R565, Q5U430, Q5VVW2, Q5XHG1, Q5XIH0, Q68FQ4, Q6NUV0, Q6P7D5, Q6PDC0, Q6PFJ7, Q6PGU2, Q6ZPR5, Q6ZT12, Q757K3, Q7ZWL6, Q8AWD1, Q8BPQ7, Q8CC70, Q8R0A7
Diamond homologs: A0CY51, A8IYS6, Q2HJH8, Q5I0R4, Q68FQ4, Q8CC70, Q9BRQ4
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
123 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 13 |
| Likely pathogenic | 6 |
| Uncertain significance | 29 |
| Likely benign | 58 |
| Benign | 12 |
Top pathogenic / likely-pathogenic (19)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1065351 | NM_032930.3(CFAP300):c.693_694insGA (p.Tyr232fs) | Pathogenic |
| 1681441 | NC_000011.9:g.(?101918202)(101918647_?)del | Pathogenic |
| 1956807 | NM_032930.3(CFAP300):c.289G>T (p.Glu97Ter) | Pathogenic |
| 1970143 | NM_032930.3(CFAP300):c.613C>T (p.Arg205Ter) | Pathogenic |
| 2719579 | NM_032930.3(CFAP300):c.478C>T (p.Gln160Ter) | Pathogenic |
| 2885787 | NM_032930.3(CFAP300):c.313C>T (p.Gln105Ter) | Pathogenic |
| 3620171 | NM_032930.3(CFAP300):c.487A>T (p.Arg163Ter) | Pathogenic |
| 3727792 | NM_032930.3(CFAP300):c.183_192+10del | Pathogenic |
| 549859 | NM_032930.3(CFAP300):c.361C>T (p.Arg121Ter) | Pathogenic |
| 549860 | NM_032930.3(CFAP300):c.154C>T (p.Gln52Ter) | Pathogenic |
| 549861 | NM_032930.3(CFAP300):c.433A>T (p.Arg145Ter) | Pathogenic |
| 549862 | NM_032930.3(CFAP300):c.198_200delinsCC (p.Phe67fs) | Pathogenic |
| 807552 | NM_032930.3(CFAP300):c.200del (p.Phe67fs) | Pathogenic |
| 2785963 | NM_032930.3(CFAP300):c.110+1G>T | Likely pathogenic |
| 2893018 | NM_032930.3(CFAP300):c.435+4A>G | Likely pathogenic |
| 3013949 | NM_032930.3(CFAP300):c.675+5G>A | Likely pathogenic |
| 3024078 | NM_032930.3(CFAP300):c.175A>T (p.Lys59Ter) | Likely pathogenic |
| 3340161 | NM_032930.3(CFAP300):c.353A>G (p.Asp118Gly) | Likely pathogenic |
| 3354718 | NM_032930.3(CFAP300):c.786_787insATAACACTGTTATGGT (p.Val263fs) | Likely pathogenic |
SpliceAI
927 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:102047578:GTG:G | donor_gain | 1.0000 |
| 11:102047724:G:T | donor_gain | 1.0000 |
| 11:102047878:G:GT | donor_gain | 1.0000 |
| 11:102047897:GTT:G | donor_loss | 1.0000 |
| 11:102047898:T:A | donor_loss | 1.0000 |
| 11:102048179:A:G | donor_gain | 1.0000 |
| 11:102066650:GA:G | donor_gain | 1.0000 |
| 11:102066652:G:GG | donor_gain | 1.0000 |
| 11:102081213:A:AG | acceptor_gain | 1.0000 |
| 11:102081214:G:GG | acceptor_gain | 1.0000 |
| 11:102081282:G:GG | donor_gain | 1.0000 |
| 11:102047600:G:GT | donor_gain | 0.9900 |
| 11:102047724:G:GT | donor_gain | 0.9900 |
| 11:102047728:G:GT | donor_gain | 0.9900 |
| 11:102047882:G:GT | donor_gain | 0.9900 |
| 11:102047897:G:GG | donor_gain | 0.9900 |
| 11:102066647:GAAGA:G | donor_gain | 0.9900 |
| 11:102081214:GT:G | acceptor_gain | 0.9900 |
| 11:102047581:G:GG | donor_gain | 0.9800 |
| 11:102047679:C:G | donor_gain | 0.9800 |
| 11:102047700:C:CG | donor_gain | 0.9800 |
| 11:102047725:A:T | donor_gain | 0.9800 |
| 11:102047809:CCCCA:C | acceptor_loss | 0.9800 |
| 11:102047813:A:AT | acceptor_loss | 0.9800 |
| 11:102047892:TTATG:T | donor_gain | 0.9800 |
| 11:102047899:TAGT:T | donor_loss | 0.9800 |
| 11:102047900:AGTA:A | donor_loss | 0.9800 |
| 11:102058472:G:GT | donor_gain | 0.9800 |
| 11:102058870:T:A | acceptor_loss | 0.9800 |
| 11:102058874:TTTTA:T | acceptor_loss | 0.9800 |
AlphaMissense
1761 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:102047579:T:A | W37R | 0.997 |
| 11:102047579:T:C | W37R | 0.997 |
| 11:102047815:G:C | W37C | 0.993 |
| 11:102047815:G:T | W37C | 0.993 |
| 11:102075967:G:A | G177D | 0.991 |
| 11:102075967:G:T | G177V | 0.991 |
| 11:102047816:T:C | S38P | 0.990 |
| 11:102066644:T:C | L143S | 0.990 |
| 11:102076029:T:G | Y198D | 0.990 |
| 11:102047580:G:C | W37S | 0.989 |
| 11:102047846:T:C | F48L | 0.989 |
| 11:102047848:C:A | F48L | 0.989 |
| 11:102047848:C:G | F48L | 0.989 |
| 11:102066647:G:C | R144P | 0.989 |
| 11:102076039:T:C | L201P | 0.989 |
| 11:102081262:T:A | V219D | 0.989 |
| 11:102081271:T:A | V222D | 0.989 |
| 11:102081217:T:A | V204D | 0.988 |
| 11:102047852:T:C | F50L | 0.987 |
| 11:102047854:T:A | F50L | 0.987 |
| 11:102047854:T:G | F50L | 0.987 |
| 11:102075966:G:C | G177R | 0.986 |
| 11:102076005:T:G | Y190D | 0.986 |
| 11:102083125:T:G | Y244D | 0.986 |
| 11:102075970:G:A | G178E | 0.985 |
| 11:102066637:G:C | D141H | 0.983 |
| 11:102083089:T:G | Y232D | 0.983 |
| 11:102075966:G:T | G177C | 0.982 |
| 11:102075970:G:T | G178V | 0.982 |
| 11:102075934:T:C | F166S | 0.981 |
dbSNP variants (sampled 300 via entrez): RS1000104883 (11:102065263 A>G), RS1000161701 (11:102055741 T>C), RS1000278527 (11:102050679 G>T), RS1000328426 (11:102072638 A>T), RS1000411439 (11:102084227 G>T), RS1000526976 (11:102070110 A>G), RS1000614696 (11:102057231 C>T), RS1000657840 (11:102060147 T>A), RS1000682600 (11:102063810 C>A,T), RS1000779013 (11:102053751 T>C), RS1000830134 (11:102080041 G>A), RS1000902123 (11:102079620 T>C), RS1000947860 (11:102076663 A>G), RS1000987588 (11:102060452 A>G,T), RS1001047759 (11:102067114 T>G)
Disease associations
OMIM: gene MIM:618058 | disease phenotypes: MIM:618063, MIM:244400
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| ciliary dyskinesia, primary, 38 | Definitive | Autosomal recessive |
| primary ciliary dyskinesia | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| ciliary dyskinesia, primary, 38 | Definitive | AR |
Mondo (2): ciliary dyskinesia, primary, 38 (MONDO:0054843), primary ciliary dyskinesia (MONDO:0016575)
Orphanet (2): Situs ambiguus (Orphanet:157769), Primary ciliary dyskinesia (Orphanet:244)
HPO phenotypes
55 total (30 of 55 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000238 | Hydrocephalus |
| HP:0000365 | Hearing impairment |
| HP:0000389 | Chronic otitis media |
| HP:0000403 | Recurrent otitis media |
| HP:0000405 | Conductive hearing impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000750 | Delayed speech and language development |
| HP:0000789 | Infertility |
| HP:0000924 | Abnormality of the skeletal system |
| HP:0001217 | Clubbing |
| HP:0001627 | Abnormal heart morphology |
| HP:0001651 | Dextrocardia |
| HP:0001669 | Transposition of the great arteries |
| HP:0001696 | Situs inversus totalis |
| HP:0001719 | Double outlet right ventricle |
| HP:0001742 | Nasal congestion |
| HP:0001746 | Asplenia |
| HP:0001748 | Polysplenia |
| HP:0002011 | Morphological central nervous system abnormality |
| HP:0002110 | Bronchiectasis |
| HP:0002119 | Ventriculomegaly |
| HP:0002257 | Chronic rhinitis |
| HP:0002566 | Intestinal malrotation |
| HP:0002643 | Neonatal respiratory distress |
| HP:0002878 | Respiratory failure |
| HP:0003251 | Male infertility |
| HP:0003623 | Neonatal onset |
| HP:0005301 | Persistent left superior vena cava |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003264_828 | Post bronchodilator FEV1/FVC ratio | 9.000000e-07 |
| GCST007324_123 | Adventurousness | 2.000000e-08 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004713 | FEV/FVC ratio |
| EFO:0008579 | risk-taking behaviour |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002925 | Ciliary Motility Disorders | C08.200; C09.150; C16.131.077.245.500; C16.320.184.500 |
| D007619 | Kartagener Syndrome | C08.127.384.500; C08.200.531; C08.695.501; C09.150.531; C14.240.400.280.500; C14.280.400.280.500; C16.131.077.245.500.531; C16.131.240.400.280.500; C16.131.740.501; C16.131.810.250.500; C16.320.184.500.531; C16.320.480 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 8 |
| mercuric bromide | decreases expression, affects cotreatment | 2 |
| Arsenic | increases abundance, increases methylation, decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| trichostatin A | increases expression | 1 |
| 3,4-dichloroaniline | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Vorinostat | increases expression, affects cotreatment | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cannabidiol | increases expression | 1 |
| Dimethyl Sulfoxide | affects expression | 1 |
| Diuron | decreases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Hydralazine | affects cotreatment, increases expression | 1 |
| Perfume | increases expression | 1 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 1 |
| Smoke | increases abundance, increases expression | 1 |
| Thimerosal | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tunicamycin | increases expression | 1 |
Clinical trials (associated diseases)
71 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02871778 | PHASE2 | COMPLETED | Clearing Lungs With ENaC Inhibition in Primary Ciliary Dyskinesia |
| NCT07318974 | PHASE2 | ACTIVE_NOT_RECRUITING | Melatonin Therapy for Improving ICSI Outcomes in Women With Diminished Ovarian Reserve |
| NCT05737485 | PHASE1 | COMPLETED | Study Evaluating the Safety and Tolerability of RCT1100 in Healthy and PCD Subjects |
| NCT06600425 | PHASE1 | COMPLETED | A Study to Assess the Safety, Tolerability, Ciliary Rescue, and Pharmacodynamics of RCT1100 in Adults With PCD |
| NCT06633757 | PHASE1 | COMPLETED | Study of Inhaled RCT1100 in Adults With PCD Caused by Pathogenic Mutations in the DNAI1 Gene to Measure Mucociliary Clearance |
| NCT04901715 | EARLY_PHASE1 | COMPLETED | Functional Studies of Novel Genes Mutated in Primary Ciliary Dyskinesia II: Genotype to Phenotype |
| NCT00005650 | Not specified | COMPLETED | Genetic Study of Patients With Primary Ciliary Dyskinesia |
| NCT00323167 | Not specified | COMPLETED | Rare Genetic Disorders of the Breathing Airways |
| NCT00368446 | Not specified | COMPLETED | Genetic Disorders of Mucociliary Clearance in Nontuberculous Mycobacterial Lung Disease |
| NCT00450918 | Not specified | COMPLETED | Evaluating Progression of and Diagnostic Tools for Primary Ciliary Dyskinesia in Children and Adolescents |
| NCT00608556 | Not specified | COMPLETED | Dyskinesia, Heterotaxy and Congenital Heart Disease |
| NCT00686309 | Not specified | UNKNOWN | Comparison of On-line and Off-line Measurements of Exhaled Nitric Oxide (NO) |
| NCT00722878 | Not specified | COMPLETED | Long-term Lung Function and Disease Progression in Children With Early Onset Primary Ciliary Dyskinesia Lung Disease |
| NCT00739817 | Not specified | UNKNOWN | Screening for Primary Ciliary Dyskinesia Using Nasal Nitric Oxide |
| NCT00783887 | Not specified | COMPLETED | Diagnosis of Primary Ciliary Dyskinesia |
| NCT00807482 | Not specified | RECRUITING | Pathogenesis of Primary Ciliary Dyskinesia (PCD) Lung Disease |
| NCT01070914 | Not specified | UNKNOWN | Early Detection and Characterization of Primary Ciliary Dyskinesia |
| NCT01155115 | Not specified | COMPLETED | Inflammatory and Microbiologic Markers in Sputum: Comparing Cystic Fibrosis With Primary Ciliary Dyskinesia |
| NCT01246258 | Not specified | COMPLETED | Otolith Function in Patients With Primary Ciliary Dyskinesia |
| NCT01929356 | Not specified | RECRUITING | Chest Physiotherapy and Lung Function in Primary Ciliary Dyskinesia |
| NCT02389049 | Not specified | COMPLETED | Genetics of Primary Ciliary Dyskinesia |
| NCT02419365 | Not specified | RECRUITING | International Primary Ciliary Dyskinesia (PCD) Registry |
| NCT02699177 | Not specified | UNKNOWN | In Vivo Measurements of Nasal Ciliary Beat Frequency by Using Interferometry |
| NCT02704455 | Not specified | NOT_YET_RECRUITING | Registry Study on Primary Ciliary Dyskinesia in Chinese Children |
| NCT03271840 | Not specified | COMPLETED | Registry for Primary Ciliary Dyskinesia |
| NCT03279965 | Not specified | UNKNOWN | MRI in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03320382 | Not specified | UNKNOWN | Multiple Breath Washout, a Clinimetric Dataset |
| NCT03370029 | Not specified | COMPLETED | Respiratory Muscle Strength, Exercise Capacity and Physical Activity Levels in Children Primary Ciliary Dyskinesia |
| NCT03494894 | Not specified | COMPLETED | Bacteriological Link Between Upper and Lower Airways in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03517865 | Not specified | ACTIVE_NOT_RECRUITING | International Primary Ciliary Dyskinesia Cohort |
| NCT03606200 | Not specified | RECRUITING | Swiss Primary Ciliary Dyskinesia Registry |
| NCT03704207 | Not specified | RECRUITING | Utility of PCD Diagnostics to Improve Clinical Care |
| NCT03704896 | Not specified | UNKNOWN | PRospective Observational Multicentre Study on VAriability of Lung Function in Stable PCD Patients |
| NCT03801395 | Not specified | COMPLETED | PCD New Gene Discovery |
| NCT03809091 | Not specified | UNKNOWN | WGS of Korean Idiopathic Bronchiectasis |
| NCT03832491 | Not specified | COMPLETED | Effect of Game Based Approach on Oxygenation, Functional Capacity and Quality of Life in Primary Ciliary Dyskinesia |
| NCT04161313 | Not specified | COMPLETED | Respiratory Function, Exercise Capacity and Peripheral Muscle Strength Among Patients With CF, PCD and Healthy Children |
| NCT04476433 | Not specified | COMPLETED | Intervention in Chronic Pediatric Patients and Their Families. |
| NCT04489472 | Not specified | UNKNOWN | The Effect of a Dietary Supplement Rich in Nitric Oxide in Patients Diagnosed With Primary Ciliary Dyskinesia. |
| NCT04602481 | Not specified | RECRUITING | Living With Primary Ciliary Dyskinesia (Living With PCD) |
Related Atlas pages
- Associated diseases: ciliary dyskinesia, primary, 38, primary ciliary dyskinesia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ciliary dyskinesia, primary, 38, primary ciliary dyskinesia