CFAP44-AS1

Summary

CFAP44-AS1 (CFAP44 antisense RNA 1, HGNC:41113) is a long non-coding RNA gene on chromosome 3q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41113
Approved symbol	CFAP44-AS1
Name	CFAP44 antisense RNA 1
Location	3q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243849
Ensembl biotype	lncRNA
Entrez	100874029
RNAcentral	URS00002AAC38 — lncRNA, 686 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000473329, ENST00000498480, ENST00000669165, ENST00000774558, ENST00000774559

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000473329 — 2 exons

Exon	Start	End
ENSE00001838926	113426717	113427046
ENSE00001880825	113403991	113404056

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 85.39.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0165 / max 13.5325, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
37961	0.0165	4

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.39	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.67	silver quality
left testis	UBERON:0004533	72.16	gold quality
right testis	UBERON:0004534	71.91	gold quality
testis	UBERON:0000473	71.63	gold quality
ventricular zone	UBERON:0003053	70.21	gold quality
quadriceps femoris	UBERON:0001377	68.23	gold quality
cerebellar vermis	UBERON:0004720	67.87	gold quality
bone marrow cell	CL:0002092	67.02	silver quality
thymus	UBERON:0002370	65.29	silver quality
skeletal muscle tissue	UBERON:0001134	63.76	silver quality
tonsil	UBERON:0002372	62.81	silver quality
calcaneal tendon	UBERON:0003701	59.62	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.49	gold quality
right uterine tube	UBERON:0001302	58.51	gold quality
monocyte	CL:0000576	57.26	gold quality
lymph node	UBERON:0000029	55.36	gold quality
primary visual cortex	UBERON:0002436	54.68	gold quality
fallopian tube	UBERON:0003889	54.09	gold quality
corpus callosum	UBERON:0002336	53.83	gold quality
adrenal tissue	UBERON:0018303	53.69	gold quality
metanephros cortex	UBERON:0010533	53.60	gold quality
blood	UBERON:0000178	52.97	gold quality
duodenum	UBERON:0002114	52.09	gold quality
liver	UBERON:0002107	51.97	gold quality
endometrium	UBERON:0001295	51.61	silver quality
cortex of kidney	UBERON:0001225	51.41	gold quality
right lobe of liver	UBERON:0001114	51.07	gold quality
gall bladder	UBERON:0002110	51.00	gold quality
prefrontal cortex	UBERON:0000451	50.65	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.