CFAP47
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Also known as FLJ36601RP13-11B7.1MGC34831
Summary
CFAP47 (cilia and flagella associated protein 47, HGNC:26708) is a protein-coding gene on chromosome Xp21.1, encoding Cilia- and flagella-associated protein 47 (Q6ZTR5). Plays a role in flagellar formation and sperm motility.
While this gene is well-supported by transcript data, no functional information on its protein product is currently available.
Source: NCBI Gene 286464 — RefSeq curated summary.
At a glance
- Gene–disease (curated): spermatogenic failure, X-linked, 3 (Limited, ClinGen) — +1 more curated relationship
- Clinical variants (ClinVar): 173 total — 6 pathogenic
- Phenotypes (HPO): 8
- MANE Select transcript:
NM_001304548
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26708 |
| Approved symbol | CFAP47 |
| Name | cilia and flagella associated protein 47 |
| Location | Xp21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ36601, RP13-11B7.1, MGC34831 |
| Ensembl gene | ENSG00000165164 |
| Ensembl biotype | protein_coding |
| OMIM | 301057 |
| Entrez | 286464 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 4 protein_coding, 1 protein_coding_CDS_not_defined, 1 retained_intron, 1 nonsense_mediated_decay
ENST00000297866, ENST00000313548, ENST00000378653, ENST00000378660, ENST00000446478, ENST00000493930, ENST00000630521
RefSeq mRNA: 2 — MANE Select: NM_001304548
NM_001304548, NM_152632
CCDS: CCDS14237, CCDS83464
Canonical transcript exons
ENST00000378653 — 64 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001090883 | 35948314 | 35948452 |
| ENSE00001090884 | 35919734 | 35920048 |
| ENSE00001090885 | 35926017 | 35926168 |
| ENSE00001090886 | 35941283 | 35941398 |
| ENSE00001215844 | 35971869 | 35971965 |
| ENSE00001216263 | 35966565 | 35966754 |
| ENSE00001216268 | 35971586 | 35971772 |
| ENSE00001216275 | 35970768 | 35970923 |
| ENSE00001216279 | 35967619 | 35967832 |
| ENSE00001216289 | 35955961 | 35956196 |
| ENSE00001216295 | 35953592 | 35953719 |
| ENSE00001216302 | 35951803 | 35951963 |
| ENSE00001216310 | 35951131 | 35951359 |
| ENSE00001424491 | 35975147 | 35975363 |
| ENSE00001478249 | 36384797 | 36385317 |
| ENSE00001478251 | 36379350 | 36379518 |
| ENSE00001478254 | 36361330 | 36361501 |
| ENSE00001478255 | 36353529 | 36353681 |
| ENSE00001478256 | 36350038 | 36350132 |
| ENSE00001478265 | 36228628 | 36228824 |
| ENSE00001595696 | 36138348 | 36138464 |
| ENSE00001598789 | 36099751 | 36099879 |
| ENSE00001613277 | 36319209 | 36319307 |
| ENSE00001615885 | 36104499 | 36104691 |
| ENSE00001633931 | 36306772 | 36306876 |
| ENSE00001644392 | 36348129 | 36348288 |
| ENSE00001651696 | 36137958 | 36138055 |
| ENSE00001659614 | 36098793 | 36098874 |
| ENSE00001693349 | 36073139 | 36073364 |
| ENSE00001723777 | 36071825 | 36071971 |
| ENSE00001727373 | 36298977 | 36299152 |
| ENSE00001737107 | 36301072 | 36301179 |
| ENSE00001741309 | 36310833 | 36310989 |
| ENSE00001760908 | 36303849 | 36303960 |
| ENSE00001765464 | 36085314 | 36085538 |
| ENSE00003522940 | 36285629 | 36285726 |
| ENSE00003532955 | 35975672 | 35975913 |
| ENSE00003536404 | 36236686 | 36236859 |
| ENSE00003653519 | 36235934 | 36236077 |
| ENSE00003671918 | 36280487 | 36280630 |
| ENSE00003672593 | 36251333 | 36251444 |
| ENSE00003705525 | 36366966 | 36367127 |
| ENSE00003760691 | 36188620 | 36188690 |
| ENSE00003761026 | 36149108 | 36149223 |
| ENSE00003761081 | 36201274 | 36201500 |
| ENSE00003761527 | 36145219 | 36145353 |
| ENSE00003762637 | 35993190 | 35993321 |
| ENSE00003763239 | 36014774 | 36014912 |
| ENSE00003763531 | 36204957 | 36205110 |
| ENSE00003764570 | 36159426 | 36159576 |
| ENSE00003764588 | 35989319 | 35989449 |
| ENSE00003765608 | 36200379 | 36200493 |
| ENSE00003769083 | 36000283 | 36000427 |
| ENSE00003769761 | 36179345 | 36179422 |
| ENSE00003770526 | 36001613 | 36001707 |
| ENSE00003771099 | 36065643 | 36065743 |
| ENSE00003772445 | 36038984 | 36039179 |
| ENSE00003773222 | 35991821 | 35991943 |
| ENSE00003773986 | 36190051 | 36190196 |
| ENSE00003774354 | 36046854 | 36047063 |
| ENSE00003774400 | 35997312 | 35997389 |
| ENSE00003774518 | 36160681 | 36160769 |
| ENSE00003778635 | 36031253 | 36031347 |
| ENSE00003779982 | 36035695 | 36035854 |
Expression profiles
Bgee: expression breadth broad, 95 present calls, max score 92.44.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6298 / max 67.7533, expressed in 178 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 195886 | 0.4005 | 138 |
| 195885 | 0.2294 | 106 |
Top tissues by expression
222 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bronchial epithelial cell | CL:0002328 | 92.44 | gold quality |
| bronchus | UBERON:0002185 | 90.56 | gold quality |
| oviduct epithelium | UBERON:0004804 | 89.60 | gold quality |
| right uterine tube | UBERON:0001302 | 88.57 | gold quality |
| buccal mucosa cell | CL:0002336 | 87.57 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 80.37 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 78.54 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 78.37 | gold quality |
| fallopian tube | UBERON:0003889 | 74.18 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 73.33 | silver quality |
| nasopharynx | UBERON:0001728 | 73.32 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 71.87 | gold quality |
| secondary oocyte | CL:0000655 | 70.27 | gold quality |
| ventricular zone | UBERON:0003053 | 68.43 | gold quality |
| pituitary gland | UBERON:0000007 | 66.97 | gold quality |
| adenohypophysis | UBERON:0002196 | 66.94 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 61.85 | gold quality |
| caput epididymis | UBERON:0004358 | 59.91 | gold quality |
| oocyte | CL:0000023 | 58.56 | silver quality |
| nasal cavity epithelium | UBERON:0005384 | 58.17 | gold quality |
| corpus callosum | UBERON:0002336 | 57.44 | gold quality |
| nucleus accumbens | UBERON:0001882 | 56.29 | gold quality |
| vena cava | UBERON:0004087 | 55.62 | gold quality |
| skin of hip | UBERON:0001554 | 55.49 | silver quality |
| right lung | UBERON:0002167 | 55.21 | gold quality |
| hypothalamus | UBERON:0001898 | 55.07 | gold quality |
| ganglionic eminence | UBERON:0004023 | 54.94 | gold quality |
| lower lobe of lung | UBERON:0008949 | 54.92 | silver quality |
| sperm | CL:0000019 | 54.45 | gold quality |
| caudate nucleus | UBERON:0001873 | 54.40 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.50 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
19 targeting CFAP47, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-4719 | 99.73 | 72.10 | 3329 |
| HSA-MIR-12124 | 99.68 | 69.17 | 2700 |
| HSA-MIR-543 | 99.52 | 69.03 | 2595 |
| HSA-MIR-4325 | 99.49 | 72.20 | 1342 |
| HSA-MIR-892C-5P | 99.16 | 70.56 | 2116 |
| HSA-MIR-3168 | 99.08 | 67.75 | 1384 |
| HSA-MIR-6830-5P | 99.01 | 68.73 | 1884 |
| HSA-MIR-6074 | 98.89 | 69.64 | 2187 |
| HSA-MIR-6755-3P | 98.61 | 66.90 | 834 |
| HSA-MIR-4773 | 98.35 | 67.30 | 1710 |
| HSA-MIR-4786-5P | 97.45 | 67.89 | 924 |
| HSA-MIR-6750-3P | 96.79 | 67.50 | 740 |
| HSA-MIR-4793-3P | 94.87 | 65.85 | 896 |
| HSA-MIR-769-5P | 94.45 | 64.56 | 603 |
Literature-anchored findings (GeneRIF, showing 4)
- Deleterious variants in X-linked CFAP47 induce asthenoteratozoospermia and primary male infertility. (PMID:33472045)
- WDR87 interacts with CFAP47 protein in the middle piece of spermatozoa flagella to participate in sperm tail assembly. (PMID:36571501)
- A novel mutation in CFAP47 causes male infertility due to multiple morphological abnormalities of the sperm flagella. (PMID:37424856)
- Mutations in CFAP47, a previously reported MMAF causative gene, also contribute to the respiratory defects in patients with PCD. (PMID:37723893)
Cross-species orthologs
0 orthologs
Paralogs (2): DLEC1 (ENSG00000008226), HYDIN (ENSG00000157423)
Protein
Protein identifiers
Cilia- and flagella-associated protein 47 — Q6ZTR5 (reviewed: Q6ZTR5)
All UniProt accessions (3): A0A0D9SEI5, A0A182DWE8, Q6ZTR5
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in flagellar formation and sperm motility.
Subunit / interactions. Interacts with CFAP65.
Subcellular location. Cytoplasm. Cytoskeleton. Flagellum basal body.
Tissue specificity. Highly expressed in spermatzoa (at protein level).
Disease relevance. Spermatogenic failure, X-linked, 3 (SPGFX3) [MIM:301059] An infertility disorder characterized by asthenoteratozoospermia. Spermatozoa exhibit multiple morphologic abnormalities, including absent, short, coiled, and irregular-caliber flagella. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6ZTR5-5 | 5 | yes |
| Q6ZTR5-1 | 1 | |
| Q6ZTR5-2 | 2 | |
| Q6ZTR5-6 | 6 |
RefSeq proteins (2): NP_001291477, NP_689845 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001715 | CH_dom | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036872 | CH_dom_sf | Homologous_superfamily |
| IPR056343 | CFAP47_dom | Domain |
| IPR058952 | Ig_CFAP47 | Domain |
Pfam: PF24529, PF26579
UniProt features (20 total): sequence variant 8, splice variant 6, sequence conflict 2, chain 1, domain 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for Q6ZTR5 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 0 (showing top):
GO Biological Process (2): sperm axoneme assembly (GO:0007288), cilium assembly (GO:0060271)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (7): cilium (GO:0005929), sperm head-tail coupling apparatus (GO:0120212), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), membrane (GO:0016020), motile cilium (GO:0031514), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| axoneme assembly | 2 |
| developmental process involved in reproduction | 1 |
| sperm flagellum assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| binding | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| cilium | 1 |
Protein interactions and networks
STRING
1242 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CFAP47 | CFAP43 | Q8NDM7 | 612 |
| CFAP47 | TTC29 | Q8NA56 | 612 |
| CFAP47 | CFAP70 | Q5T0N1 | 573 |
| CFAP47 | CFAP65 | Q6ZU64 | 570 |
| CFAP47 | LRRC43 | Q8N309 | 566 |
| CFAP47 | CFAP44 | Q96MT7 | 545 |
| CFAP47 | FAM47B | Q8NA70 | 524 |
| CFAP47 | DNAH1 | Q9P2D7 | 524 |
| CFAP47 | CFAP99 | D6REC4 | 520 |
| CFAP47 | CFAP251 | Q8TBY9 | 519 |
| CFAP47 | CFAP141 | Q5VU69 | 506 |
| CFAP47 | CFAP69 | A5D8W1 | 505 |
| CFAP47 | TTC21A | Q8NDW8 | 499 |
| CFAP47 | FAM181A | Q8N9Y4 | 485 |
| CFAP47 | CFAP91 | Q7Z4T9 | 485 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFAP47 | UBB | psi-mi:“MI:0914”(association) | 0.560 |
| CFAP47 | UBB | psi-mi:“MI:0915”(physical association) | 0.560 |
| CFAP47 | RPL35 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CFAP47 | CFTR | psi-mi:“MI:0915”(physical association) | 0.370 |
| ESR1 | TUBAL3 | psi-mi:“MI:0914”(association) | 0.350 |
| ESR2 | PSMD11 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (7): CXorf22 (Affinity Capture-MS), CXorf22 (Proximity Label-MS), CXorf22 (Affinity Capture-MS), CXorf22 (PCA), CXorf22 (Cross-Linking-MS (XL-MS)), CXorf22 (Cross-Linking-MS (XL-MS)), RPL35 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A0G2JEB6, A0JM56, B0DOB4, B0FXQ5, B1ANS9, B4F7L9, B4GQJ7, B5DHW4, B7FF06, B7FF07, B7FF08, B7FF09, B7FF12, C5IAW9, F1LW30, F1P4W9, O08747, O95185, P0DM40, Q008S8, Q18264, Q32NR9, Q3V0B4, Q402B2, Q4G0P3, Q5R4M2, Q5T0N1, Q5XI14, Q6AXU1, Q6DCF6, Q6NRS1, Q6P2C0, Q6P5D8, Q6UXZ4, Q6ZTR5, Q6ZU64, Q761X5, Q7T2Z5, Q80W93, Q86YR7
Diamond homologs: A0A0G2JEB6, Q6ZTR5
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
173 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 0 |
| Uncertain significance | 29 |
| Likely benign | 29 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (6)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1808493 | GRCh37/hg19 Xp21.1(chrX:32419533-37487291)x1 | Pathogenic |
| 3062483 | GRCh37/hg19 Xp21.1-11.4(chrX:33027159-39840641) | Pathogenic |
| 3235121 | Single allele | Pathogenic |
| 59258 | GRCh38/hg38 Xp21.1-11.4(chrX:31665506-37921988)x0 | Pathogenic |
| 975141 | Single allele | Pathogenic |
| 996916 | NM_001304548.2(CFAP47):c.7154T>A (p.Ile2385Asn) | Pathogenic |
SpliceAI
2748 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:35920044:CACAG:C | donor_loss | 1.0000 |
| X:35920045:ACAG:A | donor_loss | 1.0000 |
| X:35920046:CAG:C | donor_loss | 1.0000 |
| X:35920047:AGGT:A | donor_loss | 1.0000 |
| X:35920048:GGT:G | donor_loss | 1.0000 |
| X:35920049:G:A | donor_loss | 1.0000 |
| X:35926010:A:AG | acceptor_gain | 1.0000 |
| X:35926012:T:A | acceptor_gain | 1.0000 |
| X:35926015:A:AG | acceptor_gain | 1.0000 |
| X:35926016:G:GG | acceptor_gain | 1.0000 |
| X:35951934:GACT:G | donor_gain | 1.0000 |
| X:35951964:G:GG | donor_gain | 1.0000 |
| X:35953586:TTACA:T | acceptor_loss | 1.0000 |
| X:35953587:TACA:T | acceptor_loss | 1.0000 |
| X:35953588:A:AG | acceptor_gain | 1.0000 |
| X:35953588:ACAG:A | acceptor_gain | 1.0000 |
| X:35953589:C:G | acceptor_gain | 1.0000 |
| X:35953589:CAGGC:C | acceptor_loss | 1.0000 |
| X:35953590:A:AG | acceptor_gain | 1.0000 |
| X:35953590:AG:A | acceptor_gain | 1.0000 |
| X:35953591:G:GC | acceptor_gain | 1.0000 |
| X:35953591:GG:G | acceptor_gain | 1.0000 |
| X:35953591:GGC:G | acceptor_gain | 1.0000 |
| X:35953591:GGCT:G | acceptor_gain | 1.0000 |
| X:35953591:GGCTA:G | acceptor_gain | 1.0000 |
| X:35953672:G:GT | donor_gain | 1.0000 |
| X:35953715:CAAAA:C | donor_gain | 1.0000 |
| X:35953716:AAAA:A | donor_gain | 1.0000 |
| X:35953716:AAAAG:A | donor_loss | 1.0000 |
| X:35953717:AAA:A | donor_gain | 1.0000 |
AlphaMissense
21156 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:35951318:T:A | W282R | 0.995 |
| X:35951318:T:C | W282R | 0.995 |
| X:36228661:T:C | F2284S | 0.994 |
| X:36099850:T:A | W1700R | 0.993 |
| X:36099850:T:C | W1700R | 0.993 |
| X:35926017:T:C | F84L | 0.992 |
| X:35926019:C:A | F84L | 0.992 |
| X:35926019:C:G | F84L | 0.992 |
| X:35975859:T:A | W887R | 0.992 |
| X:35975859:T:C | W887R | 0.992 |
| X:36149180:T:C | F1915L | 0.992 |
| X:36149182:C:A | F1915L | 0.992 |
| X:36149182:C:G | F1915L | 0.992 |
| X:36201424:G:C | R2196P | 0.992 |
| X:35919944:T:C | F49L | 0.991 |
| X:35919945:T:C | F49S | 0.991 |
| X:35919946:C:A | F49L | 0.991 |
| X:35919946:C:G | F49L | 0.991 |
| X:35926018:T:C | F84S | 0.991 |
| X:35926086:T:G | Y107D | 0.991 |
| X:36228724:G:C | R2305P | 0.991 |
| X:36301080:T:C | F2624S | 0.991 |
| X:35951296:T:A | N274K | 0.990 |
| X:35951296:T:G | N274K | 0.990 |
| X:36201428:G:C | R2197S | 0.990 |
| X:36201428:G:T | R2197S | 0.990 |
| X:36379400:T:C | F3079S | 0.990 |
| X:36159481:G:C | A1948P | 0.989 |
| X:36190077:T:C | F2068L | 0.989 |
| X:36190079:C:A | F2068L | 0.989 |
dbSNP variants (sampled 300 via entrez): RS1000002870 (X:36222471 A>C), RS1000008288 (X:36169456 A>G), RS1000009577 (X:35973703 A>C,G), RS1000030327 (X:35940221 A>G), RS1000043210 (X:35986687 A>C,G), RS1000060710 (X:35926775 A>G), RS1000067172 (X:35923550 A>G), RS1000078553 (X:36006588 T>C,G), RS1000079907 (X:35956261 C>A,T), RS1000094150 (X:36297644 T>C), RS1000121806 (X:36110164 G>A), RS1000131156 (X:36050338 G>A), RS1000141245 (X:36361124 A>G), RS1000165795 (X:36361974 G>A), RS1000178193 (X:36275473 T>A)
Disease associations
OMIM: gene MIM:301057 | disease phenotypes: MIM:301059, MIM:300842, MIM:300029
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| spermatogenic failure, X-linked, 3 | Limited | X-linked |
| polycystic kidney disease | Limited | X-linked |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| spermatogenic failure, X-linked, 3 | Limited | XL |
| polycystic kidney disease | Disputed | XL |
Mondo (4): spermatogenic failure, X-linked, 3 (MONDO:0025354), XK-related neurodegenerative disease (MONDO:0018945), retinitis pigmentosa 3 (MONDO:0010227), polycystic kidney disease (MONDO:0020642)
Orphanet (2): McLeod neuroacanthocytosis syndrome (Orphanet:59306), Retinitis pigmentosa (Orphanet:791)
HPO phenotypes
8 total (8 of 8 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000798 | Oligozoospermia |
| HP:0001419 | X-linked recessive inheritance |
| HP:0003251 | Male infertility |
| HP:0012207 | Reduced sperm motility |
| HP:0032558 | Absent sperm flagella |
| HP:0032559 | Short sperm flagella |
| HP:0032560 | Coiled sperm flagella |
| HP:0033393 | Irregularly shaped sperm tail |
GWAS associations
0 associations (top):
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007690 | Polycystic Kidney Diseases | C12.050.351.968.419.403.875; C12.200.777.419.403.875; C12.950.419.403.875; C16.131.077.717; C16.320.184.625 |
| C564038 | Neuroacanthocytosis, Mcleod Type (supp.) | |
| C564520 | Retinitis Pigmentosa 3 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
16 total (human), top 16 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, increases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 1 |
| Catechin | decreases expression, affects cotreatment | 1 |
| Lead | decreases expression | 1 |
| Lipopolysaccharides | affects cotreatment, increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Smoke | increases abundance, increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Triclosan | increases expression | 1 |
| Valproic Acid | decreases methylation | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Okadaic Acid | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
Clinical trials (associated diseases)
25 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02140814 | PHASE2 | COMPLETED | Uncontrolled, Open Label, Pilot and Feasibility Study of Niacinamide in Polycystic Kidney Disease |
| NCT02558595 | PHASE2 | COMPLETED | Pilot Study of Niacinamide in Polycystic Kidney Disease (NIAC-PKD2) |
| NCT02697617 | PHASE2 | COMPLETED | Use of Low Dose Pioglitazone to Treat Autosomal Dominant Polycystic Kidney Disease |
| NCT02166489 | PHASE1 | COMPLETED | Mesenchymal Stem Cells Transplantation in Patients With Chronic Renal Failure Due to Polycystic Kidney Disease |
| NCT01009957 | PHASE2/PHASE3 | TERMINATED | Everolimus on CKD Progression in ADPKD Patients |
| NCT01680250 | PHASE2/PHASE3 | UNKNOWN | Sirolimus for Massive Polycystic Liver |
| NCT00286156 | PHASE1/PHASE2 | COMPLETED | Pilot Study of Rapamycin as Treatment for Autosomal Dominant Polycystic Kidney Disease (ADPKD) |
| NCT03423810 | EARLY_PHASE1 | COMPLETED | Assessing a Dose-Response Relationship of Hydralazine and Its Effects on DNA Methyltransferase 1 in Polycystic Kidney Disease Patients |
| NCT00792155 | Not specified | RECRUITING | Polycystic Kidney Disease Data Repository |
| NCT01873235 | Not specified | RECRUITING | PKD Clinical and Translational Core Study |
| NCT01931644 | Not specified | COMPLETED | At-Home Research Study for Patients With Autoimmune, Inflammatory, Genetic, Hematological, Infectious, Neurological, CNS, Oncological, Respiratory, Metabolic Conditions |
| NCT02142101 | Not specified | COMPLETED | Evaluation of Gut Bacteria in Patients With Polycystic Kidney Disease |
| NCT02739750 | Not specified | COMPLETED | Pioglitazone and Lumbar Bone Marrow Fat in Chronic Kidney Disease |
| NCT02936791 | Not specified | RECRUITING | Early PKD Observational Cohort Study |
| NCT03726463 | Not specified | UNKNOWN | Evaluation of Iliac and Renal Artery for Mechanism of Intracranial Aneurysm in ADPKD |
| NCT03889392 | Not specified | COMPLETED | Evaluation of Nephrectomy Specimen for Intracranial Aneurysm Development in ADPKD |
| NCT03948113 | Not specified | COMPLETED | Outcome of Autosomal Dominant Polycystic Kidney Disease Patients on Peritoneal Dialysis: a National Retrospective Study Based on Two French Registries (the French Language Peritoneal Dialysis Registry and the French Renal Epidemiology and Information Network). |
| NCT04039061 | Not specified | RECRUITING | ADPKD Patient Registry |
| NCT05215964 | Not specified | UNKNOWN | The Association Between Skeletal Muscle Mass and Severity of Polycystic Liver Disease and Polycystic Kidney Disease |
| NCT06036992 | Not specified | ACTIVE_NOT_RECRUITING | Study and Management of Cystic Complications in Autosomal Dominant Polycystic Kidney Disease |
| NCT06325644 | Not specified | RECRUITING | Well-Formulated Ketogenic Diet Polycystic Kidney Disease |
| NCT06728228 | Not specified | RECRUITING | Amnioinfusion for Fetal Renal Failure |
| NCT06841224 | Not specified | ENROLLING_BY_INVITATION | The Factors Affecting IPP in Peritoneal Dialysis Patients with Polycystic Kidney Disease |
| NCT06867471 | Not specified | RECRUITING | Effects of Exogenous Ketosis on Proteinuria and Renal Function |
| NCT07310641 | Not specified | COMPLETED | Descriptive Analysis of Preimplantation Genetic Test (PGT)in Couples With Polycystic Kidney Disease (PKD). In the ADPKD Subgroup Evaluation of Outcomes and Complications Comparing Couples in Which the Father is Affected With Couples in Which the Mother is Affected |
Related Atlas pages
- Associated diseases: spermatogenic failure, X-linked, 3, polycystic kidney disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): polycystic kidney disease, retinitis pigmentosa 3, spermatogenic failure, X-linked, 3, XK-related neurodegenerative disease