CFAP57
geneOn this page
Also known as FLJ32000
Summary
CFAP57 (cilia and flagella associated protein 57, HGNC:26485) is a protein-coding gene on chromosome 1p34.2, encoding Cilia- and flagella-associated protein 57 (Q96MR6). Associates with components of the nexin-dynein regulatory complex (N-DRC), a key regulator of ciliary/flagellar motility, and might act as an inner dynein arm (IDA) hub or linkage.
This protein encoded by this gene belongs to the WD repeat-containing family of proteins, which function in the formation of protein-protein complexes in a variety of biological pathways. This family member is thought to function in craniofacial development, possibly in the fusion of lip and palate. A missense mutation in this gene is associated with Van der Woude syndrome 2. Alternative splicing of this gene results in multiple transcript variants.
Source: NCBI Gene 149465 — RefSeq curated summary.
At a glance
- Gene–disease (curated): primary ciliary dyskinesia (Limited, ClinGen)
- GWAS associations: 2
- Clinical variants (ClinVar): 156 total — 1 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 11
- MANE Select transcript:
NM_001378189
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26485 |
| Approved symbol | CFAP57 |
| Name | cilia and flagella associated protein 57 |
| Location | 1p34.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ32000 |
| Ensembl gene | ENSG00000243710 |
| Ensembl biotype | protein_coding |
| OMIM | 614259 |
| Entrez | 149465 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 7 protein_coding, 3 nonsense_mediated_decay, 1 retained_intron
ENST00000372492, ENST00000428122, ENST00000525227, ENST00000528956, ENST00000529956, ENST00000533339, ENST00000534615, ENST00000610710, ENST00000891680, ENST00000891681, ENST00000954489
RefSeq mRNA: 4 — MANE Select: NM_001378189
NM_001167965, NM_001195831, NM_001378189, NM_152498
CCDS: CCDS479, CCDS72768, CCDS90934
Canonical transcript exons
ENST00000372492 — 23 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001457933 | 43253977 | 43254358 |
| ENSE00001457939 | 43243227 | 43243359 |
| ENSE00001457941 | 43234495 | 43234638 |
| ENSE00001552359 | 43234279 | 43234413 |
| ENSE00001654231 | 43222105 | 43222295 |
| ENSE00001677556 | 43224046 | 43224204 |
| ENSE00001713920 | 43215255 | 43215416 |
| ENSE00001751952 | 43219382 | 43219537 |
| ENSE00001779915 | 43226983 | 43227126 |
| ENSE00001783598 | 43222824 | 43222997 |
| ENSE00001794113 | 43232508 | 43232624 |
| ENSE00002161161 | 43172735 | 43172910 |
| ENSE00002175932 | 43172330 | 43172453 |
| ENSE00003465705 | 43206720 | 43206932 |
| ENSE00003487355 | 43198481 | 43198646 |
| ENSE00003514310 | 43183591 | 43183877 |
| ENSE00003529557 | 43199390 | 43199503 |
| ENSE00003571443 | 43186707 | 43186859 |
| ENSE00003573139 | 43181534 | 43181850 |
| ENSE00003595853 | 43185149 | 43185356 |
| ENSE00003621067 | 43221372 | 43221465 |
| ENSE00003630567 | 43209743 | 43209916 |
| ENSE00003664418 | 43197553 | 43197692 |
Expression profiles
Bgee: expression breadth ubiquitous, 157 present calls, max score 94.38.
FANTOM5 (CAGE): breadth broad, TPM avg 0.5715 / max 55.0324, expressed in 201 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 2495 | 0.4454 | 173 |
| 2496 | 0.1058 | 37 |
| 2497 | 0.0203 | 6 |
Top tissues by expression
244 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 94.38 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 87.63 | gold quality |
| right lobe of liver | UBERON:0001114 | 87.07 | gold quality |
| bronchial epithelial cell | CL:0002328 | 85.77 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 85.65 | gold quality |
| bronchus | UBERON:0002185 | 83.75 | gold quality |
| left testis | UBERON:0004533 | 81.79 | gold quality |
| right testis | UBERON:0004534 | 81.75 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 81.09 | gold quality |
| testis | UBERON:0000473 | 79.96 | gold quality |
| liver | UBERON:0002107 | 75.85 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 75.01 | gold quality |
| caput epididymis | UBERON:0004358 | 70.04 | gold quality |
| buccal mucosa cell | CL:0002336 | 69.02 | silver quality |
| fallopian tube | UBERON:0003889 | 69.02 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 67.85 | gold quality |
| adenohypophysis | UBERON:0002196 | 66.92 | gold quality |
| pituitary gland | UBERON:0000007 | 65.97 | gold quality |
| secondary oocyte | CL:0000655 | 65.83 | gold quality |
| metanephros cortex | UBERON:0010533 | 65.83 | gold quality |
| right lung | UBERON:0002167 | 65.46 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 65.20 | gold quality |
| mucosa of stomach | UBERON:0001199 | 64.51 | gold quality |
| jejunal mucosa | UBERON:0000399 | 63.26 | gold quality |
| caudate nucleus | UBERON:0001873 | 63.12 | gold quality |
| nucleus accumbens | UBERON:0001882 | 62.67 | gold quality |
| cortex of kidney | UBERON:0001225 | 61.78 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 61.61 | gold quality |
| prefrontal cortex | UBERON:0000451 | 61.55 | gold quality |
| islet of Langerhans | UBERON:0000006 | 60.73 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.15 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
32 targeting CFAP57, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-3177-5P | 99.65 | 70.38 | 1174 |
| HSA-MIR-586 | 99.65 | 70.40 | 2051 |
| HSA-MIR-6513-3P | 99.59 | 69.77 | 1102 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-940 | 99.37 | 66.14 | 2064 |
| HSA-MIR-6808-5P | 99.31 | 66.23 | 2150 |
| HSA-MIR-6893-5P | 99.31 | 66.25 | 2119 |
| HSA-MIR-1206 | 99.30 | 69.32 | 1016 |
| HSA-MIR-3191-5P | 99.24 | 66.52 | 1722 |
| HSA-MIR-4270 | 99.02 | 66.26 | 1987 |
| HSA-MIR-6770-5P | 98.97 | 66.76 | 1853 |
| HSA-MIR-491-3P | 98.88 | 68.86 | 1224 |
| HSA-MIR-500A-5P | 98.76 | 69.13 | 1241 |
| HSA-MIR-6754-5P | 98.60 | 65.54 | 1627 |
| HSA-MIR-518C-5P | 98.53 | 69.20 | 1640 |
| HSA-MIR-3944-5P | 98.50 | 67.55 | 997 |
| HSA-MIR-3613-5P | 98.40 | 68.91 | 604 |
| HSA-MIR-7156-3P | 98.25 | 67.66 | 859 |
| HSA-MIR-4778-5P | 97.96 | 68.06 | 1634 |
| HSA-MIR-5571-3P | 97.80 | 66.07 | 640 |
| HSA-MIR-5196-3P | 97.57 | 65.98 | 979 |
Literature-anchored findings (GeneRIF, showing 3)
- A missense mutation in WD-repeat domain 65 (WDR65) in an individual with Van der Woude syndrome. (PMID:21574244)
- Mutation of CFAP57, a protein required for the asymmetric targeting of a subset of inner dynein arms in Chlamydomonas, causes primary ciliary dyskinesia. (PMID:32764743)
- Loss-of-function mutations in CFAP57 cause multiple morphological abnormalities of the flagella in humans and mice. (PMID:36752199)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cfap57 | ENSDARG00000058090 |
| mus_musculus | Cfap57 | ENSMUSG00000028730 |
| rattus_norvegicus | Cfap57 | ENSRNOG00000007037 |
| drosophila_melanogaster | tous | FBGN0034745 |
Protein
Protein identifiers
Cilia- and flagella-associated protein 57 — Q96MR6 (reviewed: Q96MR6)
Alternative names: WD repeat-containing protein 65
All UniProt accessions (5): A0A087WVY5, E9PP89, E9PRV3, Q96MR6, H7C4D4
UniProt curated annotations — full annotation on UniProt →
Function. Associates with components of the nexin-dynein regulatory complex (N-DRC), a key regulator of ciliary/flagellar motility, and might act as an inner dynein arm (IDA) hub or linkage.
Subunit / interactions. May form homodimers. Associates with components of the nexin-dynein regulatory complex (N-DRC) and the CFAP184:CFAP263 complex.
Subcellular location. Cytoplasm. Cytoskeleton. Cilium axoneme.
Tissue specificity. Expressed in nasal epithelial cells.
Disease relevance. Spermatogenic failure 95 (SPGF95) [MIM:620917] An autosomal recessive, male infertility disorder characterized by markedly reduced progressive sperm motility and multiple morphologic abnormalities of the flagella, including irregularly shaped, short, absent, coiled, and bent flagella. The disease is caused by variants affecting the gene represented in this entry.
Induction. May be an IRF6-target.
Similarity. Belongs to the CFAP57 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96MR6-1 | 1 | yes |
| Q96MR6-2 | 2 |
RefSeq proteins (4): NP_001161437, NP_001182760, NP_001365118, NP_689711 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001680 | WD40_rpt | Repeat |
| IPR011047 | Quinoprotein_ADH-like_sf | Homologous_superfamily |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Homologous_superfamily |
| IPR052993 | CFA-57 | Family |
| IPR055442 | Beta-prop_EML-like_2nd | Domain |
Pfam: PF23414
UniProt features (24 total): repeat 10, sequence variant 7, coiled-coil region 3, splice variant 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8J07 | ELECTRON MICROSCOPY | 4.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96MR6-F1 | 78.57 | 0.33 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 102 (showing top):
GOBP_SINGLE_FERTILIZATION, GOBP_MALE_GAMETE_GENERATION, CAGCTG_AP4_Q5, EFC_Q6, GOBP_AXONEMAL_DYNEIN_COMPLEX_ASSEMBLY, GGAANCGGAANY_UNKNOWN, GOBP_CILIUM_ORGANIZATION, GOBP_CILIUM_MOVEMENT, chr1p34, GOBP_CILIUM_OR_FLAGELLUM_DEPENDENT_CELL_MOTILITY, GOBP_ORGANELLE_ASSEMBLY, GOBP_CELLULAR_PROCESS_INVOLVED_IN_REPRODUCTION_IN_MULTICELLULAR_ORGANISM, GOBP_MICROTUBULE_BUNDLE_FORMATION, ELK1_01, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION
GO Biological Process (4): single fertilization (GO:0007338), axonemal dynein complex assembly (GO:0070286), sperm flagellum assembly (GO:0120316), cilium organization (GO:0044782)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): axoneme (GO:0005930), sperm flagellum (GO:0036126), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| fertilization | 1 |
| axoneme assembly | 1 |
| protein-containing complex assembly | 1 |
| developmental process involved in reproduction | 1 |
| spermatid development | 1 |
| flagellated sperm motility | 1 |
| motile cilium assembly | 1 |
| organelle organization | 1 |
| plasma membrane bounded cell projection organization | 1 |
| binding | 1 |
| cytoskeleton | 1 |
| microtubule | 1 |
| ciliary plasm | 1 |
| 9+2 motile cilium | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
734 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CFAP57 | LRRC46 | Q96FV0 | 519 |
| CFAP57 | CCDC40 | Q4G0X9 | 518 |
| CFAP57 | CCDC39 | Q9UFE4 | 503 |
| CFAP57 | CFAP221 | Q4G0U5 | 479 |
| CFAP57 | CCDC146 | Q8IYE0 | 469 |
| CFAP57 | DNAAF11 | Q86X45 | 469 |
| CFAP57 | DRC2 | Q8IXS2 | 468 |
| CFAP57 | DNAAF1 | Q8NEP3 | 468 |
| CFAP57 | CCDC74A | Q96AQ1 | 459 |
| CFAP57 | LRRC34 | Q8IZ02 | 459 |
| CFAP57 | TSNAXIP1 | Q2TAA8 | 459 |
| CFAP57 | RSPH14 | Q9UHP6 | 442 |
| CFAP57 | RSPH10B | P0C881 | 427 |
| CFAP57 | ZSWIM2 | Q8NEG5 | 425 |
| CFAP57 | WDR49 | Q8IV35 | 425 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFAP57 | CAVIN1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| HIF1AN | ARID1A | psi-mi:“MI:0914”(association) | 0.350 |
| CFAP57 | APOD | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (9): CFAP57 (Affinity Capture-MS), CFAP57 (Proximity Label-MS), CFAP57 (Affinity Capture-MS), APOD (Affinity Capture-MS), HSPA8 (Affinity Capture-MS), CFAP57 (Affinity Capture-MS), CFAP57 (Affinity Capture-MS), CFAP57 (Affinity Capture-MS), EEA1 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A2AC93, B2RY71, E7F6H7, E9PYY5, E9Q5M6, O14576, O43815, O55106, O88485, O88487, P27766, P36872, P70483, Q0III3, Q13409, Q13610, Q16959, Q16960, Q29RQ3, Q2HJ56, Q32KS2, Q32LP9, Q4QR00, Q4V8G4, Q5DQR4, Q5NVM2, Q5SQE2, Q5VTH9, Q5XIL8, Q5ZLK1, Q62871, Q63100, Q66HC9, Q6GPB9, Q8BPM2, Q8C0M8, Q8C0P5, Q8IVH8, Q8IWG1, Q92828
Diamond homologs: C5MJE8, O60097, P38915, Q55FJ0, Q96MR6, Q9D180, P93339, P93397, P93398, Q2KJH4, Q40507
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
156 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 3 |
| Uncertain significance | 101 |
| Likely benign | 28 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4849300 | NM_001378189.1(CFAP57):c.2872C>T (p.Arg958Ter) | Pathogenic |
| 1344738 | NM_001378189.1(CFAP57):c.1762C>T (p.Arg588Ter) | Likely pathogenic |
| 3910441 | NM_001378189.1(CFAP57):c.3119_3120del (p.Arg1040fs) | Likely pathogenic |
| 4845736 | NM_001378189.1(CFAP57):c.1231C>T (p.Arg411Ter) | Likely pathogenic |
SpliceAI
3799 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:43181661:G:GT | donor_gain | 1.0000 |
| 1:43181864:TGAC:T | donor_gain | 1.0000 |
| 1:43183582:A:AG | acceptor_gain | 1.0000 |
| 1:43183583:T:G | acceptor_gain | 1.0000 |
| 1:43183867:G:GT | donor_gain | 1.0000 |
| 1:43183873:GAGAG:G | donor_gain | 1.0000 |
| 1:43183875:GAG:G | donor_gain | 1.0000 |
| 1:43183876:AGGTA:A | donor_loss | 1.0000 |
| 1:43183877:GGTAA:G | donor_loss | 1.0000 |
| 1:43183878:GTAAT:G | donor_loss | 1.0000 |
| 1:43185355:GG:G | donor_gain | 1.0000 |
| 1:43185356:GG:G | donor_gain | 1.0000 |
| 1:43186700:T:TA | acceptor_gain | 1.0000 |
| 1:43186703:GCA:G | acceptor_loss | 1.0000 |
| 1:43186704:CA:C | acceptor_loss | 1.0000 |
| 1:43186855:GCAAG:G | donor_gain | 1.0000 |
| 1:43186859:GGT:G | donor_loss | 1.0000 |
| 1:43186860:G:GC | donor_loss | 1.0000 |
| 1:43186861:T:A | donor_loss | 1.0000 |
| 1:43199388:A:AG | acceptor_gain | 1.0000 |
| 1:43199389:G:GG | acceptor_gain | 1.0000 |
| 1:43199389:GT:G | acceptor_gain | 1.0000 |
| 1:43199389:GTGTT:G | acceptor_gain | 1.0000 |
| 1:43199499:GGAAG:G | donor_gain | 1.0000 |
| 1:43199500:GAAGG:G | donor_gain | 1.0000 |
| 1:43199505:T:A | donor_loss | 1.0000 |
| 1:43206930:TTGG:T | donor_loss | 1.0000 |
| 1:43206931:TGGTG:T | donor_loss | 1.0000 |
| 1:43206932:GGT:G | donor_loss | 1.0000 |
| 1:43206933:G:GG | donor_gain | 1.0000 |
AlphaMissense
8292 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:43243261:T:C | L1147P | 1.000 |
| 1:43181572:A:C | S66R | 0.999 |
| 1:43181574:T:A | S66R | 0.999 |
| 1:43181574:T:G | S66R | 0.999 |
| 1:43181591:T:C | L72P | 0.999 |
| 1:43181594:C:A | A73D | 0.999 |
| 1:43181788:T:A | W138R | 0.999 |
| 1:43181788:T:C | W138R | 0.999 |
| 1:43186776:A:C | S347R | 0.999 |
| 1:43186778:C:A | S347R | 0.999 |
| 1:43186778:C:G | S347R | 0.999 |
| 1:43199421:C:A | A487D | 0.999 |
| 1:43206735:T:A | W520R | 0.999 |
| 1:43206735:T:C | W520R | 0.999 |
| 1:43206792:T:A | W539R | 0.999 |
| 1:43206792:T:C | W539R | 0.999 |
| 1:43219401:T:C | L704P | 0.999 |
| 1:43219410:G:C | R707P | 0.999 |
| 1:43222156:T:C | L798P | 0.999 |
| 1:43222243:T:C | L827P | 0.999 |
| 1:43222267:T:C | L835P | 0.999 |
| 1:43234322:T:C | L1057P | 0.999 |
| 1:43243240:T:C | L1140P | 0.999 |
| 1:43243264:G:C | R1148P | 0.999 |
| 1:43243273:T:C | L1151P | 0.999 |
| 1:43181593:G:C | A73P | 0.998 |
| 1:43181741:T:C | L122P | 0.998 |
| 1:43185298:T:A | V304D | 0.998 |
| 1:43186795:T:C | L353P | 0.998 |
| 1:43197676:T:A | W416R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000039422 (1:43207593 G>A), RS1000043393 (1:43250094 C>G,T), RS1000064956 (1:43208299 A>G), RS1000129119 (1:43237751 A>G), RS1000165339 (1:43170516 C>T), RS1000197800 (1:43188090 C>T), RS1000203909 (1:43214099 C>T), RS1000260307 (1:43250481 C>T), RS1000305574 (1:43213460 T>C), RS1000423378 (1:43250852 C>T), RS1000428582 (1:43237360 T>C), RS1000432006 (1:43220915 G>A,T), RS1000493486 (1:43193568 T>C), RS1000649818 (1:43201994 G>A), RS1000659290 (1:43227344 C>A)
Disease associations
OMIM: gene MIM:614259 | disease phenotypes: MIM:244400, MIM:606713, MIM:620917
GenCC curated gene-disease
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| primary ciliary dyskinesia | Limited | AR |
Mondo (3): primary ciliary dyskinesia (MONDO:0016575), van der Woude syndrome 2 (MONDO:0011712), spermatogenic failure 95 (MONDO:0975747)
Orphanet (2): Primary ciliary dyskinesia (Orphanet:244), Van der Woude syndrome (Orphanet:888)
HPO phenotypes
11 total (11 of 11 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000027 | Azoospermia |
| HP:0011462 | Young adult onset |
| HP:0012207 | Reduced sperm motility |
| HP:0032558 | Absent sperm flagella |
| HP:0032559 | Short sperm flagella |
| HP:0032560 | Coiled sperm flagella |
| HP:0033393 | Irregularly shaped sperm tail |
| HP:0034011 | Reduced progressive sperm motility |
| HP:0034811 | Bent sperm flagella |
| HP:6000135 | Low semen volume |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001024_1 | Telomere length | 2.000000e-06 |
| GCST010105_102 | Nicotine dependence symptom count | 7.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009262 | nicotine dependence symptom count |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002925 | Ciliary Motility Disorders | C08.200; C09.150; C16.131.077.245.500; C16.320.184.500 |
| D007619 | Kartagener Syndrome | C08.127.384.500; C08.200.531; C08.695.501; C09.150.531; C14.240.400.280.500; C14.280.400.280.500; C16.131.077.245.500.531; C16.131.240.400.280.500; C16.131.740.501; C16.131.810.250.500; C16.320.184.500.531; C16.320.480 |
| C536529 | Van der Woude syndrome 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
11 total (human), top 11 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| Aflatoxin B1 | increases methylation | 2 |
| afuresertib | increases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Atrazine | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
Clinical trials (associated diseases)
71 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02871778 | PHASE2 | COMPLETED | Clearing Lungs With ENaC Inhibition in Primary Ciliary Dyskinesia |
| NCT07318974 | PHASE2 | ACTIVE_NOT_RECRUITING | Melatonin Therapy for Improving ICSI Outcomes in Women With Diminished Ovarian Reserve |
| NCT05737485 | PHASE1 | COMPLETED | Study Evaluating the Safety and Tolerability of RCT1100 in Healthy and PCD Subjects |
| NCT06600425 | PHASE1 | COMPLETED | A Study to Assess the Safety, Tolerability, Ciliary Rescue, and Pharmacodynamics of RCT1100 in Adults With PCD |
| NCT06633757 | PHASE1 | COMPLETED | Study of Inhaled RCT1100 in Adults With PCD Caused by Pathogenic Mutations in the DNAI1 Gene to Measure Mucociliary Clearance |
| NCT04901715 | EARLY_PHASE1 | COMPLETED | Functional Studies of Novel Genes Mutated in Primary Ciliary Dyskinesia II: Genotype to Phenotype |
| NCT00005650 | Not specified | COMPLETED | Genetic Study of Patients With Primary Ciliary Dyskinesia |
| NCT00323167 | Not specified | COMPLETED | Rare Genetic Disorders of the Breathing Airways |
| NCT00368446 | Not specified | COMPLETED | Genetic Disorders of Mucociliary Clearance in Nontuberculous Mycobacterial Lung Disease |
| NCT00450918 | Not specified | COMPLETED | Evaluating Progression of and Diagnostic Tools for Primary Ciliary Dyskinesia in Children and Adolescents |
| NCT00608556 | Not specified | COMPLETED | Dyskinesia, Heterotaxy and Congenital Heart Disease |
| NCT00686309 | Not specified | UNKNOWN | Comparison of On-line and Off-line Measurements of Exhaled Nitric Oxide (NO) |
| NCT00722878 | Not specified | COMPLETED | Long-term Lung Function and Disease Progression in Children With Early Onset Primary Ciliary Dyskinesia Lung Disease |
| NCT00739817 | Not specified | UNKNOWN | Screening for Primary Ciliary Dyskinesia Using Nasal Nitric Oxide |
| NCT00783887 | Not specified | COMPLETED | Diagnosis of Primary Ciliary Dyskinesia |
| NCT00807482 | Not specified | RECRUITING | Pathogenesis of Primary Ciliary Dyskinesia (PCD) Lung Disease |
| NCT01070914 | Not specified | UNKNOWN | Early Detection and Characterization of Primary Ciliary Dyskinesia |
| NCT01155115 | Not specified | COMPLETED | Inflammatory and Microbiologic Markers in Sputum: Comparing Cystic Fibrosis With Primary Ciliary Dyskinesia |
| NCT01246258 | Not specified | COMPLETED | Otolith Function in Patients With Primary Ciliary Dyskinesia |
| NCT01929356 | Not specified | RECRUITING | Chest Physiotherapy and Lung Function in Primary Ciliary Dyskinesia |
| NCT02389049 | Not specified | COMPLETED | Genetics of Primary Ciliary Dyskinesia |
| NCT02419365 | Not specified | RECRUITING | International Primary Ciliary Dyskinesia (PCD) Registry |
| NCT02699177 | Not specified | UNKNOWN | In Vivo Measurements of Nasal Ciliary Beat Frequency by Using Interferometry |
| NCT02704455 | Not specified | NOT_YET_RECRUITING | Registry Study on Primary Ciliary Dyskinesia in Chinese Children |
| NCT03271840 | Not specified | COMPLETED | Registry for Primary Ciliary Dyskinesia |
| NCT03279965 | Not specified | UNKNOWN | MRI in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03320382 | Not specified | UNKNOWN | Multiple Breath Washout, a Clinimetric Dataset |
| NCT03370029 | Not specified | COMPLETED | Respiratory Muscle Strength, Exercise Capacity and Physical Activity Levels in Children Primary Ciliary Dyskinesia |
| NCT03494894 | Not specified | COMPLETED | Bacteriological Link Between Upper and Lower Airways in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03517865 | Not specified | ACTIVE_NOT_RECRUITING | International Primary Ciliary Dyskinesia Cohort |
| NCT03606200 | Not specified | RECRUITING | Swiss Primary Ciliary Dyskinesia Registry |
| NCT03704207 | Not specified | RECRUITING | Utility of PCD Diagnostics to Improve Clinical Care |
| NCT03704896 | Not specified | UNKNOWN | PRospective Observational Multicentre Study on VAriability of Lung Function in Stable PCD Patients |
| NCT03801395 | Not specified | COMPLETED | PCD New Gene Discovery |
| NCT03809091 | Not specified | UNKNOWN | WGS of Korean Idiopathic Bronchiectasis |
| NCT03832491 | Not specified | COMPLETED | Effect of Game Based Approach on Oxygenation, Functional Capacity and Quality of Life in Primary Ciliary Dyskinesia |
| NCT04161313 | Not specified | COMPLETED | Respiratory Function, Exercise Capacity and Peripheral Muscle Strength Among Patients With CF, PCD and Healthy Children |
| NCT04476433 | Not specified | COMPLETED | Intervention in Chronic Pediatric Patients and Their Families. |
| NCT04489472 | Not specified | UNKNOWN | The Effect of a Dietary Supplement Rich in Nitric Oxide in Patients Diagnosed With Primary Ciliary Dyskinesia. |
| NCT04602481 | Not specified | RECRUITING | Living With Primary Ciliary Dyskinesia (Living With PCD) |
Related Atlas pages
- Associated diseases: primary ciliary dyskinesia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): primary ciliary dyskinesia, spermatogenic failure 95, van der Woude syndrome 2