CFAP61-AS1

Summary

CFAP61-AS1 (CFAP61 antisense RNA 1, HGNC:40731) is a long non-coding RNA gene on chromosome 20p11.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40731
Approved symbol	CFAP61-AS1
Name	CFAP61 antisense RNA 1
Location	20p11.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243810
Ensembl biotype	lncRNA
Entrez	101929575
RNAcentral	URS00026A2895 — lncRNA, 2316 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000460400

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000460400 — 3 exons

Exon	Start	End
ENSE00001810299	20267494	20267809
ENSE00001887924	20258407	20258559
ENSE00001923026	20259698	20259796

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 86.80.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3141 / max 39.6521, expressed in 118 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186579	0.1916	92
186580	0.1225	64

Top tissues by expression

96 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.80	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.36	gold quality
cortex of kidney	UBERON:0001225	57.49	gold quality
islet of Langerhans	UBERON:0000006	56.92	gold quality
monocyte	CL:0000576	56.76	gold quality
prefrontal cortex	UBERON:0000451	54.41	gold quality
primary visual cortex	UBERON:0002436	53.87	gold quality
calcaneal tendon	UBERON:0003701	52.61	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.73	gold quality
placenta	UBERON:0001987	51.34	gold quality
endometrium	UBERON:0001295	50.96	gold quality
subcutaneous adipose tissue	UBERON:0002190	50.74	gold quality
blood	UBERON:0000178	50.73	gold quality
pituitary gland	UBERON:0000007	50.24	gold quality
adipose tissue	UBERON:0001013	49.80	gold quality
left coronary artery	UBERON:0001626	49.27	gold quality
liver	UBERON:0002107	49.20	gold quality
lymph node	UBERON:0000029	49.10	silver quality
muscle of leg	UBERON:0001383	48.95	gold quality
ascending aorta	UBERON:0001496	48.50	gold quality
kidney	UBERON:0002113	48.24	gold quality
adenohypophysis	UBERON:0002196	48.16	gold quality
gastrocnemius	UBERON:0001388	48.10	gold quality
thoracic aorta	UBERON:0001515	47.54	gold quality
frontal cortex	UBERON:0001870	47.35	gold quality
omental fat pad	UBERON:0010414	47.11	gold quality
cerebellum	UBERON:0002037	46.60	silver quality
adrenal gland	UBERON:0002369	46.37	gold quality
right lobe of thyroid gland	UBERON:0001119	46.25	gold quality
cerebellar cortex	UBERON:0002129	46.18	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.