CFAP74
gene geneOn this page
Also known as FLJ45476
Summary
CFAP74 (cilia and flagella associated protein 74, HGNC:29368) is a protein-coding gene on chromosome 1p36.33, encoding Cilia- and flagella-associated protein 74 (Q9C0B2). As part of the central apparatus of the cilium axoneme may play a role in cilium movement.
Predicted to be involved in axoneme assembly. Located in cytoplasm; nucleus; and sperm flagellum. Implicated in primary ciliary dyskinesia.
Source: NCBI Gene 85452 — RefSeq curated summary.
At a glance
- Gene–disease (curated): ciliary dyskinesia, primary, 49, without situs inversus (Moderate, ClinGen)
- GWAS associations: 1
- Clinical variants (ClinVar): 203 total — 7 pathogenic, 7 likely-pathogenic
- Phenotypes (HPO): 56
- MANE Select transcript:
NM_001304360
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29368 |
| Approved symbol | CFAP74 |
| Name | cilia and flagella associated protein 74 |
| Location | 1p36.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ45476 |
| Ensembl gene | ENSG00000142609 |
| Ensembl biotype | protein_coding |
| OMIM | 620187 |
| Entrez | 85452 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 7 retained_intron, 3 protein_coding
ENST00000270720, ENST00000378590, ENST00000378592, ENST00000412120, ENST00000461752, ENST00000464311, ENST00000468610, ENST00000493316, ENST00000493964, ENST00000682832
RefSeq mRNA: 1 — MANE Select: NM_001304360
NM_001304360
CCDS: CCDS90840
Canonical transcript exons
ENST00000682832 — 39 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001696103 | 1926894 | 1927028 |
| ENSE00001767669 | 1927607 | 1927746 |
| ENSE00001833586 | 1942028 | 1942156 |
| ENSE00001844333 | 1940316 | 1940403 |
| ENSE00001896802 | 1930060 | 1930336 |
| ENSE00001910630 | 1946317 | 1946439 |
| ENSE00001924949 | 1928784 | 1928882 |
| ENSE00001931348 | 1939594 | 1939767 |
| ENSE00001958120 | 1938855 | 1938988 |
| ENSE00001958749 | 1944331 | 1944452 |
| ENSE00003473372 | 1959964 | 1960030 |
| ENSE00003476387 | 1963749 | 1963867 |
| ENSE00003478389 | 1926457 | 1926512 |
| ENSE00003514677 | 1988512 | 1988655 |
| ENSE00003522881 | 1925783 | 1925938 |
| ENSE00003528963 | 1926652 | 1926761 |
| ENSE00003536274 | 1923367 | 1923499 |
| ENSE00003552917 | 1966371 | 1966526 |
| ENSE00003561944 | 1955691 | 1955850 |
| ENSE00003585076 | 1988889 | 1988973 |
| ENSE00003605108 | 1990890 | 1990975 |
| ENSE00003622276 | 1924391 | 1924520 |
| ENSE00003634604 | 1923775 | 1923929 |
| ENSE00003650472 | 1926228 | 1926347 |
| ENSE00003664478 | 1959120 | 1959209 |
| ENSE00003686348 | 1964888 | 1965061 |
| ENSE00003691473 | 1956620 | 1956784 |
| ENSE00003714108 | 1972937 | 1973047 |
| ENSE00003720442 | 1985386 | 1985490 |
| ENSE00003722823 | 1971980 | 1972082 |
| ENSE00003730804 | 1986937 | 1987035 |
| ENSE00003736758 | 1974025 | 1974198 |
| ENSE00003744170 | 1968635 | 1968833 |
| ENSE00003745188 | 1970659 | 1970816 |
| ENSE00003749889 | 1946990 | 1947054 |
| ENSE00003824989 | 1922589 | 1922723 |
| ENSE00003916243 | 1921957 | 1922388 |
| ENSE00003920541 | 2003701 | 2003786 |
| ENSE00003924366 | 1922985 | 1923145 |
Expression profiles
Bgee: expression breadth ubiquitous, 163 present calls, max score 96.92.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2313 / max 36.0868, expressed in 109 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 9861 | 0.0909 | 46 |
| 9863 | 0.0488 | 21 |
| 9859 | 0.0339 | 13 |
| 9864 | 0.0289 | 7 |
| 9862 | 0.0288 | 12 |
Top tissues by expression
279 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 96.92 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 85.64 | gold quality |
| bronchial epithelial cell | CL:0002328 | 85.31 | gold quality |
| bronchus | UBERON:0002185 | 84.54 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 83.91 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 83.41 | gold quality |
| right testis | UBERON:0004534 | 82.88 | gold quality |
| left testis | UBERON:0004533 | 82.81 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 82.43 | gold quality |
| cerebellar cortex | UBERON:0002129 | 82.16 | gold quality |
| cerebellum | UBERON:0002037 | 80.16 | gold quality |
| testis | UBERON:0000473 | 79.90 | gold quality |
| hair follicle | UBERON:0002073 | 79.66 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 78.99 | gold quality |
| buccal mucosa cell | CL:0002336 | 78.12 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 76.44 | gold quality |
| right frontal lobe | UBERON:0002810 | 75.47 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 74.86 | silver quality |
| tibialis anterior | UBERON:0001385 | 73.36 | silver quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 72.25 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 72.04 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 71.95 | gold quality |
| cingulate cortex | UBERON:0003027 | 71.93 | gold quality |
| caudate nucleus | UBERON:0001873 | 71.83 | gold quality |
| right lung | UBERON:0002167 | 71.58 | gold quality |
| prefrontal cortex | UBERON:0000451 | 71.50 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 71.50 | gold quality |
| right lobe of liver | UBERON:0001114 | 71.07 | gold quality |
| frontal cortex | UBERON:0001870 | 70.70 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 70.07 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.53 |
| E-MTAB-6678 | no | 3.97 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
18 targeting CFAP74, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-6755-5P | 99.95 | 65.59 | 464 |
| HSA-MIR-1249-5P | 99.61 | 66.55 | 2049 |
| HSA-MIR-6797-5P | 99.61 | 66.55 | 2084 |
| HSA-MIR-4721 | 99.26 | 66.05 | 818 |
| HSA-MIR-4292 | 99.16 | 65.57 | 1767 |
| HSA-MIR-6791-5P | 99.16 | 65.92 | 1844 |
| HSA-MIR-6868-5P | 99.06 | 65.69 | 1284 |
| HSA-MIR-939-3P | 98.97 | 65.07 | 2347 |
| HSA-MIR-6846-5P | 98.81 | 65.86 | 1121 |
| HSA-MIR-6848-5P | 98.81 | 65.49 | 1126 |
| HSA-MIR-6804-5P | 98.39 | 65.77 | 1084 |
| HSA-MIR-637 | 97.91 | 64.05 | 1517 |
| HSA-MIR-6069 | 97.45 | 65.88 | 357 |
| HSA-MIR-3126-3P | 97.17 | 66.51 | 468 |
| HSA-MIR-3907 | 96.76 | 65.04 | 662 |
Literature-anchored findings (GeneRIF, showing 3)
- KIAA1751 is a target gene of the BACH1 transcription factor according to ChIP-seq analysis in HEK 293 cells. (PMID:21555518)
- Biallelic mutations of CFAP74 may cause human primary ciliary dyskinesia and MMAF phenotype. (PMID:32555313)
- Recessive Mutations in CFAP74 Cause Primary Ciliary Dyskinesia with Normal Ciliary Ultrastructure. (PMID:36047773)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cfap74 | ENSDARG00000075917 |
| mus_musculus | Cfap74 | ENSMUSG00000078490 |
| rattus_norvegicus | Cfap74 | ENSRNOG00000023627 |
Protein
Protein identifiers
Cilia- and flagella-associated protein 74 — Q9C0B2 (reviewed: Q9C0B2)
All UniProt accessions (3): Q9C0B2, A0A804HLA9, Q5T2D8
UniProt curated annotations — full annotation on UniProt →
Function. As part of the central apparatus of the cilium axoneme may play a role in cilium movement. May play an important role in sperm architecture and function.
Subcellular location. Cytoplasm. Cytoskeleton. Cilium axoneme. Flagellum axoneme.
Disease relevance. Ciliary dyskinesia, primary, 49, without situs inversus (CILD49) [MIM:620197] A form of primary ciliary dyskinesia, a disorder characterized by abnormalities of motile cilia. Respiratory infections leading to chronic inflammation and bronchiectasis are recurrent, due to defects in the respiratory cilia. CILD49 is an autosomal recessive form without situs abnormalities. Affected males also show infertility due to defective flagellar morphology and function. The disease may be caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the CFAP74 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9C0B2-1 | 1 | yes |
| Q9C0B2-2 | 2 | |
| Q9C0B2-3 | 3 |
RefSeq proteins (1): NP_001291289* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR056306 | Ig-CFAP74_2nd | Domain |
| IPR056307 | Ig-CFAP74_3rd | Domain |
| IPR056310 | Ig-CFAP74_4th | Domain |
Pfam: PF24770, PF24771, PF24778, PF24798
UniProt features (18 total): sequence variant 7, sequence conflict 3, splice variant 3, compositionally biased region 2, chain 1, region of interest 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9C0B2-F1 | 69.38 | 0.08 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 173 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_UP, GOBP_CILIUM_ORGANIZATION, GOBP_ORGANELLE_ASSEMBLY, GOBP_MICROTUBULE_BUNDLE_FORMATION, GOBP_CELL_PROJECTION_ORGANIZATION, GOBP_AXONEME_ASSEMBLY, GOCC_CYTOPLASMIC_REGION, GOCC_MOTILE_CILIUM, GOCC_CILIUM, DODD_NASOPHARYNGEAL_CARCINOMA_DN, chr1p36, LU_EZH2_TARGETS_DN, GOBP_MICROTUBULE_CYTOSKELETON_ORGANIZATION, GOCC_9PLUS2_MOTILE_CILIUM, BCAT.100_UP.V1_UP
GO Biological Process (1): axoneme assembly (GO:0035082)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (8): nucleus (GO:0005634), cytoplasm (GO:0005737), axoneme (GO:0005930), sperm flagellum (GO:0036126), cytoskeleton (GO:0005856), cilium (GO:0005929), motile cilium (GO:0031514), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| microtubule bundle formation | 1 |
| cellular component assembly | 1 |
| cilium assembly | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoskeleton | 1 |
| microtubule | 1 |
| ciliary plasm | 1 |
| 9+2 motile cilium | 1 |
| intracellular membraneless organelle | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| cilium | 1 |
Protein interactions and networks
STRING
1149 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CFAP74 | GABRD | O14764 | 821 |
| CFAP74 | RSPH10B | P0C881 | 625 |
| CFAP74 | PRKCZ | Q05513 | 577 |
| CFAP74 | SLC6A1 | P30531 | 549 |
| CFAP74 | GABRA5 | P31644 | 545 |
| CFAP74 | TTC29 | Q8NA56 | 529 |
| CFAP74 | TSNAXIP1 | Q2TAA8 | 526 |
| CFAP74 | RSPH14 | Q9UHP6 | 524 |
| CFAP74 | CFAP43 | Q8NDM7 | 521 |
| CFAP74 | CCDC146 | Q8IYE0 | 502 |
| CFAP74 | ZSWIM2 | Q8NEG5 | 500 |
| CFAP74 | KCNK3 | O14649 | 492 |
| CFAP74 | GABRA4 | P48169 | 490 |
| CFAP74 | PRAMEF18 | Q5VWM3 | 478 |
| CFAP74 | CHLSN | Q9BRJ6 | 468 |
IntAct
12 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HTR1E | ATP5F1B | psi-mi:“MI:0914”(association) | 0.560 |
| C20orf96 | CFAP74 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CFAP74 | STT3B | psi-mi:“MI:0915”(physical association) | 0.400 |
| CFAP74 | MANF | psi-mi:“MI:0915”(physical association) | 0.400 |
| CFAP74 | SPTB | psi-mi:“MI:0915”(physical association) | 0.400 |
| MAPT | LANCL1 | psi-mi:“MI:0914”(association) | 0.350 |
| C20orf96 | HSPA8 | psi-mi:“MI:0914”(association) | 0.350 |
| KATNIP | psi-mi:“MI:0914”(association) | 0.350 | |
| HCN4 | CFAP74 | psi-mi:“MI:0914”(association) | 0.350 |
| CFAP74 | UNC119B | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL22 | TRAV18 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (14): CFAP74 (Affinity Capture-MS), CFAP74 (Affinity Capture-MS), CFAP74 (Affinity Capture-MS), CFAP74 (Affinity Capture-MS), CFAP74 (Affinity Capture-MS), CFAP74 (Affinity Capture-MS), CFAP74 (Proximity Label-MS), CFAP74 (Proximity Label-MS), CFAP74 (Affinity Capture-RNA), CFAP74 (Affinity Capture-MS), CFAP74 (Cross-Linking-MS (XL-MS)), CFAP74 (Affinity Capture-MS), GNS (Cross-Linking-MS (XL-MS)), CFAP74 (Affinity Capture-MS)
ESM2 similar proteins: A2VD13, A6QP29, A7E3N7, B5DFG1, O75127, P54098, P54099, Q05AA6, Q13474, Q3SX05, Q3SZK4, Q3TYG6, Q3U0L2, Q3U5Q7, Q3URY6, Q3ZBK7, Q4R5Q4, Q53GS7, Q58CQ5, Q5R655, Q5RAS2, Q66H85, Q6NUQ4, Q6ZUX3, Q7YS91, Q80UU1, Q8BKF1, Q8BL74, Q8C0R7, Q8C1F5, Q8C2E4, Q8CJ00, Q8N4P6, Q8R322, Q8TE82, Q969Z0, Q96KN7, Q96MK2, Q99MQ3, Q9BQ95
Diamond homologs: D4P3R7, Q3UY96, Q9C0B2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
203 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 7 |
| Likely pathogenic | 7 |
| Uncertain significance | 156 |
| Likely benign | 20 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1340028 | GRCh37/hg19 1p36.33-36.13(chr1:849466-17525065)x1 | Pathogenic |
| 2443731 | NM_001304360.2(CFAP74):c.983G>A (p.Gly328Asp) | Pathogenic |
| 2443732 | NM_001304360.2(CFAP74):c.3532G>A (p.Asp1178Asn) | Pathogenic |
| 2443733 | NM_001304360.2(CFAP74):c.652C>T (p.Arg218Trp) | Pathogenic |
| 2443734 | NM_001304360.2(CFAP74):c.4331G>C (p.Ser1444Thr) | Pathogenic |
| 2443736 | NM_001304360.2(CFAP74):c.907del (p.Gln303fs) | Pathogenic |
| 427642 | GRCh37/hg19 1p36.33-36.32(chr1:852863-4203509)x3 | Pathogenic |
| 2443735 | NM_001304360.2(CFAP74):c.4380_4381dup (p.Phe1461fs) | Likely pathogenic |
| 2443737 | NM_001304360.2(CFAP74):c.1706dup (p.Gly570fs) | Likely pathogenic |
| 3340495 | NM_001304360.2(CFAP74):c.2924del (p.Leu975fs) | Likely pathogenic |
| 3340496 | NM_001304360.2(CFAP74):c.1714_1715del (p.Leu572fs) | Likely pathogenic |
| 3362881 | NM_001304360.2(CFAP74):c.3044T>C (p.Val1015Ala) | Likely pathogenic |
| 3362882 | NM_001304360.2(CFAP74):c.2452C>T (p.Arg818Trp) | Likely pathogenic |
| 4280102 | NM_001304360.2(CFAP74):c.838C>T (p.Arg280Ter) | Likely pathogenic |
SpliceAI
8734 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:1922587:A:AC | donor_gain | 1.0000 |
| 1:1922588:C:CC | donor_gain | 1.0000 |
| 1:1922588:CAT:C | donor_gain | 1.0000 |
| 1:1923365:AC:A | donor_gain | 1.0000 |
| 1:1923366:CC:C | donor_gain | 1.0000 |
| 1:1923366:CCCT:C | donor_gain | 1.0000 |
| 1:1923496:TTTT:T | acceptor_gain | 1.0000 |
| 1:1923925:CGTCC:C | acceptor_gain | 1.0000 |
| 1:1923926:GTCC:G | acceptor_gain | 1.0000 |
| 1:1923927:TCC:T | acceptor_gain | 1.0000 |
| 1:1923928:CC:C | acceptor_gain | 1.0000 |
| 1:1923928:CCC:C | acceptor_gain | 1.0000 |
| 1:1923929:CC:C | acceptor_gain | 1.0000 |
| 1:1923930:C:CA | acceptor_loss | 1.0000 |
| 1:1923930:C:CC | acceptor_gain | 1.0000 |
| 1:1923931:T:A | acceptor_loss | 1.0000 |
| 1:1924399:T:TA | donor_gain | 1.0000 |
| 1:1924403:T:TA | donor_gain | 1.0000 |
| 1:1924492:T:C | acceptor_gain | 1.0000 |
| 1:1924516:TGCAG:T | acceptor_gain | 1.0000 |
| 1:1924518:CAG:C | acceptor_gain | 1.0000 |
| 1:1924519:AG:A | acceptor_gain | 1.0000 |
| 1:1924521:C:A | acceptor_loss | 1.0000 |
| 1:1924521:C:CC | acceptor_gain | 1.0000 |
| 1:1926643:G:C | donor_gain | 1.0000 |
| 1:1926762:C:CC | acceptor_gain | 1.0000 |
| 1:1926919:T:TA | donor_gain | 1.0000 |
| 1:1927602:CCCA:C | donor_loss | 1.0000 |
| 1:1927603:CCAC:C | donor_loss | 1.0000 |
| 1:1927604:CA:C | donor_loss | 1.0000 |
AlphaMissense
10731 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:1939740:C:G | A911P | 0.997 |
| 1:1942037:A:G | F869S | 0.996 |
| 1:1939639:G:C | N944K | 0.995 |
| 1:1939639:G:T | N944K | 0.995 |
| 1:1940332:A:T | I896K | 0.994 |
| 1:1944375:G:C | C814W | 0.994 |
| 1:1939610:A:G | F954S | 0.993 |
| 1:1939615:G:C | F952L | 0.993 |
| 1:1939615:G:T | F952L | 0.993 |
| 1:1939617:A:G | F952L | 0.993 |
| 1:1939733:A:T | V913D | 0.993 |
| 1:1940350:A:G | L890P | 0.993 |
| 1:1923899:A:G | F1422S | 0.992 |
| 1:1939739:G:T | A911D | 0.992 |
| 1:1923835:G:C | F1443L | 0.991 |
| 1:1923835:G:T | F1443L | 0.991 |
| 1:1923837:A:G | F1443L | 0.991 |
| 1:1923898:G:C | F1422L | 0.991 |
| 1:1923898:G:T | F1422L | 0.991 |
| 1:1923900:A:G | F1422L | 0.991 |
| 1:1938963:C:T | G968E | 0.991 |
| 1:1923836:A:G | F1443S | 0.990 |
| 1:1923842:A:T | V1441D | 0.990 |
| 1:1938874:A:G | C998R | 0.990 |
| 1:1942043:A:G | L867P | 0.990 |
| 1:1944376:C:T | C814Y | 0.990 |
| 1:1944377:A:G | C814R | 0.990 |
| 1:1930124:A:G | F1075S | 0.989 |
| 1:1938964:C:A | G968W | 0.988 |
| 1:1940332:A:C | I896R | 0.988 |
dbSNP variants (sampled 300 via entrez): RS1000003267 (1:1981331 G>A), RS1000034351 (1:1960405 G>A), RS1000099552 (1:1961352 G>A), RS1000120274 (1:1934628 C>T), RS1000123498 (1:1995015 G>A), RS1000139697 (1:1965413 G>C,T), RS1000178405 (1:1969698 C>T), RS1000186308 (1:1936840 A>C,G), RS1000189443 (1:1996274 T>G), RS1000190895 (1:1943733 A>G), RS1000210071 (1:1993788 C>T), RS1000223511 (1:1998446 G>C), RS1000227019 (1:1961022 T>C), RS1000240229 (1:1935497 T>C), RS1000256981 (1:1946787 C>A,G,T)
Disease associations
OMIM: gene MIM:620187 | disease phenotypes: MIM:620197
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| ciliary dyskinesia, primary, 49, without situs inversus | Limited | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| ciliary dyskinesia, primary, 49, without situs inversus | Moderate | AR |
Mondo (3): ciliary dyskinesia, primary, 49, without situs inversus (MONDO:0859353), neuromuscular disease (MONDO:0019056), distal trisomy 1p36 (MONDO:0019870)
Orphanet (2): Neuromuscular disease (Orphanet:68381), Distal duplication 1p36 syndrome (Orphanet:96069)
HPO phenotypes
56 total (30 of 56 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000238 | Hydrocephalus |
| HP:0000365 | Hearing impairment |
| HP:0000389 | Chronic otitis media |
| HP:0000403 | Recurrent otitis media |
| HP:0000405 | Conductive hearing impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000750 | Delayed speech and language development |
| HP:0000924 | Abnormality of the skeletal system |
| HP:0001217 | Clubbing |
| HP:0001627 | Abnormal heart morphology |
| HP:0001669 | Transposition of the great arteries |
| HP:0001696 | Situs inversus totalis |
| HP:0001719 | Double outlet right ventricle |
| HP:0001742 | Nasal congestion |
| HP:0001746 | Asplenia |
| HP:0001748 | Polysplenia |
| HP:0002011 | Morphological central nervous system abnormality |
| HP:0002110 | Bronchiectasis |
| HP:0002119 | Ventriculomegaly |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002257 | Chronic rhinitis |
| HP:0002566 | Intestinal malrotation |
| HP:0002643 | Neonatal respiratory distress |
| HP:0002878 | Respiratory failure |
| HP:0003251 | Male infertility |
| HP:0005301 | Persistent left superior vena cava |
| HP:0005425 | Recurrent sinopulmonary infections |
| HP:0006536 | Airway obstruction |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003123_1 | Severe influenza A (H1N1) infection | 8.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:1001488 | influenza A (H1N1) |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009468 | Neuromuscular Diseases | C10.668 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, decreases methylation | 2 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| dicrotophos | increases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | affects methylation, increases methylation | 1 |
| coumarin | decreases phosphorylation | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
| jinfukang | increases expression, affects cotreatment | 1 |
| Fulvestrant | increases methylation | 1 |
| Arsenic | affects methylation | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Diethylhexyl Phthalate | increases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Quercetin | decreases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Cadmium Chloride | decreases expression | 1 |
Clinical trials (associated diseases)
198 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00331656 | PHASE4 | UNKNOWN | Comparative Study of Non-Invasive Mask Ventilation vs Cuirass Ventilation in Patients With Acute Respiratory Failure. |
| NCT00994552 | PHASE4 | UNKNOWN | Comparison of Pressure Support and Pressure Control Ventilation in Chronic Respiratory Failure |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00942227 | PHASE3 | COMPLETED | The Value of Traction in Treatment of Lumbar Radiculopathy |
| NCT00979108 | PHASE3 | COMPLETED | The Value of Traction in the Treatment of Cervical Radiculopathy |
| NCT01826487 | PHASE3 | COMPLETED | Phase 3 Study of Ataluren in Participants With Nonsense Mutation Duchenne Muscular Dystrophy (nmDMD) |
| NCT02090959 | PHASE3 | TERMINATED | An Extension Study of Ataluren (PTC124) in Participants With Nonsense Mutation Dystrophinopathy |
| NCT02436096 | PHASE3 | COMPLETED | A Study to Evaluate eFFIcacy and Safety of Sublingual TNX-102 SL Tablet Taken at Bedtime in Patients With fibRoMyalgia |
| NCT02829814 | PHASE3 | TERMINATED | Repeat of: A Study to Evaluate Efficacy and Safety of Sublingual TNX-102 SL Tablet Taken at Bedtime in Patients With Fibromyalgia |
| NCT03179631 | PHASE3 | COMPLETED | Long-Term Outcomes of Ataluren in Duchenne Muscular Dystrophy |
| NCT05126758 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of Deramiocel (CAP-1002) in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy |
| NCT05156320 | PHASE3 | COMPLETED | Efficacy and Safety of Apitegromab in Patients With Later-Onset Spinal Muscular Atrophy Treated With Nusinersen or Risdiplam |
| NCT05337553 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Efficacy and Safety of Taldefgrobep Alfa in Participants With Spinal Muscular Atrophy |
| NCT05626855 | PHASE3 | ACTIVE_NOT_RECRUITING | Long-Term Safety & Efficacy of Apitegromab in Patients With SMA Who Completed Previous Trials of Apitegromab |
| NCT06672237 | PHASE3 | RECRUITING | A Phase 3 Study of NTLA-2001 in ATTRv-PN |
| NCT01074359 | PHASE2 | TERMINATED | Safety and Efficacy Study of A0001 in Patients With the A3243G Mitochondrial DNA Point Mutation |
| NCT01371149 | PHASE2 | COMPLETED | Patient -Ventilator Interaction in Chronic Respiratory Failure |
| NCT02022072 | PHASE2 | TERMINATED | Evaluation of Vital Capacity |
| NCT03127514 | PHASE2 | COMPLETED | AMX0035 in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT03406780 | PHASE2 | COMPLETED | A Study of CAP-1002 in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy |
| NCT03921528 | PHASE2 | COMPLETED | An Active Treatment Study of SRK-015 in Patients With Type 2 or Type 3 Spinal Muscular Atrophy |
| NCT05479981 | PHASE2 | COMPLETED | Extension of AOC 1001-CS1 (MARINA) Study in Adult Myotonic Dystrophy Type 1 (DM1) Patients |
| NCT06339580 | PHASE2 | RECRUITING | Assessment of Volume-targeted Ventilation in Patients With Neuromuscular Disease |
| NCT07071935 | PHASE2 | NOT_YET_RECRUITING | A Clinical Trial of Early Ventilation in Amyotrophic Lateral Sclerosis (EVENT ALS) |
| NCT07287189 | PHASE2 | RECRUITING | Phase 2 Study of SAT-3247 in Pediatric Ambulatory Patients |
| NCT00252252 | PHASE1 | COMPLETED | AutoVPAP Versus VPAP; Assessment of Sleep and Ventilation |
| NCT01560741 | PHASE1 | UNKNOWN | Telemedicine and Ventilator Titration in Chronic Respiratory Patients Initiating Non-invasive Ventilation |
| NCT01621984 | PHASE1 | COMPLETED | Therapeutic Riding and Neuromuscular Disease |
| NCT01758510 | PHASE1 | COMPLETED | Safety Study of HLA-haplo Matched Allogenic Bone Marrow Derived Stem Cell Treatment in Amyotrophic Lateral Sclerosis |
| NCT03440034 | PHASE1 | COMPLETED | Study of Pioglitazone in Sporadic Inclusion Body Myositis |
| NCT05730842 | PHASE1 | COMPLETED | Absorption, Metabolism, Excretion and Absolute Bioavailability of EDG-5506 in Healthy Volunteers |
| NCT03272802 | PHASE2/PHASE3 | UNKNOWN | Treatment Effect of Edaravone in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT00860951 | PHASE1/PHASE2 | COMPLETED | P300 Brain Computer Interface Keyboard to Operate Assistive Technology |
| NCT02362425 | PHASE1/PHASE2 | COMPLETED | Antioxidant Therapy in RYR1-Related Congenital Myopathy |
| NCT00001201 | Not specified | COMPLETED | Evaluation of Neuromuscular Disease |
| NCT00002044 | Not specified | COMPLETED | A Pilot Study To Evaluate the Effect of Retrovir (Zidovudine: AZT) in the Treatment of Human Immunodeficiency Virus (HIV) Associated Dementia and Neuromuscular Diseases |
| NCT00004553 | Not specified | COMPLETED | Electromyography to Diagnose Neuromuscular Disorders |
| NCT00015470 | Not specified | COMPLETED | Diagnostic Evaluation of Patients With Neuromuscular Disease |
| NCT00017745 | Not specified | COMPLETED | Phenotype/Genotype Correlations in Neuromuscular Disorders |
| NCT00695591 | Not specified | COMPLETED | Home Sleep Testing in Neuromuscular Disease Patients |
Related Atlas pages
- Associated diseases: ciliary dyskinesia, primary, 49, without situs inversus
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ciliary dyskinesia, primary, 49, without situs inversus, distal trisomy 1p36, neuromuscular disease