CHAC1
gene geneOn this page
Also known as MGC4504
Summary
CHAC1 (ChaC glutathione specific gamma-glutamylcyclotransferase 1, HGNC:28680) is a protein-coding gene on chromosome 15q15.1, encoding Glutathione-specific gamma-glutamylcyclotransferase 1 (Q9BUX1). Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide.
This gene encodes a member of the gamma-glutamylcyclotransferase family of proteins. The encoded protein has been shown to promote neuronal differentiation by deglycination of the Notch receptor, which prevents receptor maturation and inhibits Notch signaling. This protein may also play a role in the unfolded protein response, and in regulation of glutathione levels and oxidative balance in the cell. Elevated expression of this gene may indicate increased risk of cancer recurrence among breast and ovarian cancer patients.
Source: NCBI Gene 79094 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 61 total — 1 likely-pathogenic
- MANE Select transcript:
NM_024111
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28680 |
| Approved symbol | CHAC1 |
| Name | ChaC glutathione specific gamma-glutamylcyclotransferase 1 |
| Location | 15q15.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC4504 |
| Ensembl gene | ENSG00000128965 |
| Ensembl biotype | protein_coding |
| OMIM | 614587 |
| Entrez | 79094 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000444189, ENST00000487220, ENST00000617768
RefSeq mRNA: 2 — MANE Select: NM_024111
NM_001142776, NM_024111
CCDS: CCDS10070, CCDS45233
Canonical transcript exons
ENST00000617768 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000883946 | 40954228 | 40954263 |
| ENSE00003727209 | 40953471 | 40953814 |
| ENSE00003729052 | 40955373 | 40956512 |
Expression profiles
Bgee: expression breadth ubiquitous, 204 present calls, max score 89.48.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 22.0440 / max 317.3239, expressed in 1547 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 146155 | 21.7294 | 1532 |
| 146154 | 0.3147 | 182 |
Top tissues by expression
270 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gastrocnemius | UBERON:0001388 | 89.48 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 86.72 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.19 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 86.03 | gold quality |
| endothelial cell | CL:0000115 | 84.47 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 84.22 | gold quality |
| muscle of leg | UBERON:0001383 | 84.15 | gold quality |
| stromal cell of endometrium | CL:0002255 | 84.04 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 82.63 | gold quality |
| cartilage tissue | UBERON:0002418 | 82.31 | gold quality |
| tibialis anterior | UBERON:0001385 | 81.28 | silver quality |
| prefrontal cortex | UBERON:0000451 | 81.16 | gold quality |
| oocyte | CL:0000023 | 81.01 | gold quality |
| buccal mucosa cell | CL:0002336 | 80.29 | gold quality |
| muscle organ | UBERON:0001630 | 78.88 | gold quality |
| right frontal lobe | UBERON:0002810 | 78.19 | gold quality |
| cingulate cortex | UBERON:0003027 | 78.04 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 78.04 | gold quality |
| hypothalamus | UBERON:0001898 | 78.03 | gold quality |
| olfactory bulb | UBERON:0002264 | 77.93 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 77.80 | gold quality |
| frontal cortex | UBERON:0001870 | 77.74 | gold quality |
| neocortex | UBERON:0001950 | 77.39 | gold quality |
| type B pancreatic cell | CL:0000169 | 77.21 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 77.16 | gold quality |
| esophagus mucosa | UBERON:0002469 | 76.93 | gold quality |
| right lobe of liver | UBERON:0001114 | 76.81 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 76.80 | gold quality |
| secondary oocyte | CL:0000655 | 76.71 | gold quality |
| parotid gland | UBERON:0001831 | 76.47 | silver quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-3929 | yes | 159.73 |
| E-MTAB-7037 | yes | 129.97 |
| E-ANND-3 | yes | 5.28 |
| E-MTAB-6058 | no | 186.54 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ATF4, CREB1, ESR1
miRNA regulators (miRDB)
64 targeting CHAC1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4713-3P | 100.00 | 65.92 | 505 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-7845-5P | 99.88 | 64.88 | 771 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-26A-5P | 99.78 | 73.52 | 2303 |
| HSA-MIR-26B-5P | 99.78 | 73.51 | 2305 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-11181-3P | 99.75 | 66.38 | 2205 |
| HSA-MIR-4465 | 99.71 | 72.56 | 2096 |
| HSA-MIR-561-3P | 99.64 | 70.90 | 3647 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-4524A-5P | 99.57 | 71.73 | 1193 |
| HSA-MIR-4524B-5P | 99.57 | 71.68 | 1195 |
| HSA-MIR-6733-3P | 99.54 | 67.80 | 1281 |
| HSA-MIR-4437 | 99.52 | 65.29 | 1266 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-142-5P | 99.48 | 70.92 | 2416 |
| HSA-MIR-5590-3P | 99.48 | 70.91 | 2429 |
| HSA-MIR-1324 | 99.46 | 66.57 | 1302 |
Literature-anchored findings (GeneRIF, showing 16)
- High CHAC1 mRNA expression could be an independent indicator for elevated risk of cancer recurrence in breast and ovarian cancer (PMID:22108517)
- nisin exerts these effects on HNSCC, in part, through CHAC1, a proapoptotic cation transport regulator, and through a concomitant CHAC1-independent influx of extracellular calcium (PMID:23342279)
- Botch regulates Notch signaling through deglycination and identify a posttranslational modification of Notch that plays an important role in neurogenesis. (PMID:24767995)
- Human CHAC1 Protein Degrades Glutathione, and mRNA Induction Is Regulated by the Transcription Factors ATF4 and ATF3 and a Bipartite ATF/CRE Regulatory Element. (PMID:25931127)
- Temozolomide (TMZ)-mediated gene expression profiles and networks are involved in inducing glioblastoma cell death. Increased CHAC1 and reduced Notch3 levels are both also significantly involved in TMZ-mediated cytotoxicity. The TMZ-regulated CHAC1 pathway inhibits Notch3 activation, resulting in attenuation of Notch3-mediated signaling pathways. (PMID:27986595)
- The data revealed that CHAC2 prevented CHAC1-mediated GSH degradation, which suggests that CHAC2 competes with CHAC1 to maintain GSH homeostasis. (PMID:29054545)
- results suggest that CHAC1 is involved in the regulation of inflammation in bronchial cells during Pseudomonas aeruginosa infection and may explain the excessive inflammation present in the respiratory tracts of patients with cystic fibrosis. (PMID:30555487)
- Significant CHAC1 overexpression was detected in H. pylori-infected parietal cells that expressed the human proton pump/H,K-ATPase alpha subunit. (PMID:31111570)
- Transcriptomic analysis of the effect of (E)-3-(3,5-dimethoxyphenyl)-1-(2-methoxyphenyl) prop-2-en-1-one (DPP23) on reactive oxygen species generation in MIA PaCa-2 pancreatic cancer cells. (PMID:32949369)
- Ferroptosis-related gene CHAC1 is a valid indicator for the poor prognosis of kidney renal clear cell carcinoma. (PMID:33728749)
- High levels of unfolded protein response component CHAC1 associates with cancer progression signatures in malignant breast cancer tissues. (PMID:35930144)
- CHAC1 as a Novel Contributor of Ferroptosis in Retinal Pigment Epithelial Cells with Oxidative Damage. (PMID:36675091)
- CHAC1 exacerbates LPS-induced ferroptosis and apoptosis in HK-2 cells by promoting oxidative stress. (PMID:36916093)
- MIA3 promotes the degradation of GSH (glutathione) by binding to CHAC1, thereby promoting the progression of hepatocellular carcinoma. (PMID:37948019)
- CHAC1 promotes cell ferroptosis and enhances radiation sensitivity in thyroid carcinoma. (PMID:38247333)
- Cancer associated fibroblast secreted miR-432-5p targets CHAC1 to inhibit ferroptosis and promote acquired chemoresistance in prostate cancer. (PMID:38769193)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | chac1 | ENSDARG00000070426 |
| mus_musculus | Chac1 | ENSMUSG00000027313 |
| rattus_norvegicus | Chac1 | ENSRNOG00000014387 |
| drosophila_melanogaster | CG10365 | FBGN0039109 |
| caenorhabditis_elegans | WBGENE00017724 |
Paralogs (1): CHAC2 (ENSG00000143942)
Protein
Protein identifiers
Glutathione-specific gamma-glutamylcyclotransferase 1 — Q9BUX1 (reviewed: Q9BUX1)
Alternative names: Blocks Notch protein, Cation transport regulator-like protein 1
All UniProt accessions (2): Q9BUX1, H0YK90
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides. Glutathione depletion is an important factor for apoptosis initiation and execution. Acts as a pro-apoptotic component of the unfolded protein response pathway by mediating the pro-apoptotic effects of the ATF4-ATF3-DDIT3/CHOP cascade. Negative regulator of Notch signaling pathway involved in embryonic neurogenesis: acts by inhibiting Notch cleavage by furin, maintaining Notch in an immature inactive form, thereby promoting neurogenesis in embryos.
Subunit / interactions. Interacts with NOTCH1 (via extracellular region).
Subcellular location. Cytoplasm. Cytosol. Golgi apparatus. trans-Golgi network.
Induction. Induced by chemical activators of the unfolded protein response (UPR) such as tunicamycin, DTT and thapsigargin.
Similarity. Belongs to the gamma-glutamylcyclotransferase family. ChaC subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BUX1-1 | 1 | yes |
| Q9BUX1-2 | 2 |
RefSeq proteins (2): NP_001136248, NP_077016* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006840 | ChaC | Family |
| IPR013024 | GGCT-like | Domain |
| IPR036568 | GGCT-like_sf | Homologous_superfamily |
Pfam: PF04752
Catalyzed reactions (Rhea), 1 shown:
- glutathione = L-cysteinylglycine + 5-oxo-L-proline (RHEA:47724)
UniProt features (7 total): chain 1, region of interest 1, compositionally biased region 1, active site 1, binding site 1, splice variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BUX1-F1 | 85.56 | 0.66 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 115 (proton acceptor)
Ligand- & substrate-binding residues (1): 35–40
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-174403 | Glutathione synthesis and recycling |
| R-HSA-9648895 | Response of EIF2AK1 (HRI) to heme deficiency |
MSigDB gene sets: 235 (showing top):
GSE45365_NK_CELL_VS_BCELL_DN, GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, REACTOME_BIOLOGICAL_OXIDATIONS, GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GOBP_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS, AREB6_03, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GOBP_MODIFIED_AMINO_ACID_CATABOLIC_PROCESS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GAUSSMANN_MLL_AF4_FUSION_TARGETS_C_DN, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, AP4_Q6, GOBP_NEUROGENESIS
GO Biological Process (12): glutathione metabolic process (GO:0006749), glutathione catabolic process (GO:0006751), response to unfolded protein (GO:0006986), Notch signaling pathway (GO:0007219), negative regulation of protein processing (GO:0010955), neurogenesis (GO:0022008), negative regulation of Notch signaling pathway (GO:0045746), response to caloric restriction (GO:0061771), intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (GO:0070059), glutathione biosynthetic process (GO:0006750), apoptotic process (GO:0006915), nervous system development (GO:0007399)
GO Molecular Function (5): Notch binding (GO:0005112), glutathione specific gamma-glutamylcyclotransferase activity (GO:0061928), gamma-glutamylcyclotransferase activity (GO:0003839), protein binding (GO:0005515), lyase activity (GO:0016829)
GO Cellular Component (4): cytoplasm (GO:0005737), trans-Golgi network (GO:0005802), cytosol (GO:0005829), Golgi apparatus (GO:0005794)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Glutathione conjugation | 1 |
| Cellular responses to stress | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| glutathione metabolic process | 2 |
| amidine-lyase activity | 2 |
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| modified amino acid metabolic process | 1 |
| sulfur compound metabolic process | 1 |
| modified amino acid catabolic process | 1 |
| sulfur compound catabolic process | 1 |
| response to topologically incorrect protein | 1 |
| cell surface receptor signaling pathway | 1 |
| protein processing | 1 |
| negative regulation of proteolysis | 1 |
| regulation of protein processing | 1 |
| negative regulation of protein maturation | 1 |
| nervous system development | 1 |
| cell differentiation | 1 |
| Notch signaling pathway | 1 |
| regulation of Notch signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| response to stress | 1 |
| response to nutrient levels | 1 |
| response to endoplasmic reticulum stress | 1 |
| intrinsic apoptotic signaling pathway | 1 |
| nonribosomal peptide biosynthetic process | 1 |
| modified amino acid biosynthetic process | 1 |
| sulfur compound biosynthetic process | 1 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| system development | 1 |
| signaling receptor binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| Golgi apparatus subcompartment | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
972 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CHAC1 | TRIB3 | Q96RU7 | 789 |
| CHAC1 | ATF3 | P18847 | 745 |
| CHAC1 | ASNS | P08184 | 742 |
| CHAC1 | PPP1R15A | O75807 | 629 |
| CHAC1 | XBP1 | P17861 | 629 |
| CHAC1 | ATF4 | P18848 | 626 |
| CHAC1 | GPX4 | P36969 | 573 |
| CHAC1 | SLC7A11 | Q9UPY5 | 507 |
| CHAC1 | ATF5 | Q9Y2D1 | 506 |
| CHAC1 | GRPEL2 | Q8TAA5 | 505 |
| CHAC1 | HSPA1A | P08107 | 496 |
| CHAC1 | SESN2 | P58004 | 494 |
| CHAC1 | EIF2S1 | P05198 | 474 |
| CHAC1 | GGCT | O75223 | 473 |
| CHAC1 | DUSP1 | P28562 | 472 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CHAC1 | RHOXF2 | psi-mi:“MI:0915”(physical association) | 0.510 |
| VIPR2 | EI24 | psi-mi:“MI:0914”(association) | 0.350 |
| SCG5 | MACROH2A1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (6): RHOXF2 (Two-hybrid), RHOXF2 (Affinity Capture-Western), CHAC1 (Affinity Capture-MS), CHAC1 (Affinity Capture-MS), CHAC1 (Negative Genetic), CHAC1 (Affinity Capture-RNA)
ESM2 similar proteins: A5PK74, A6H751, B3STU3, D3ZBP4, D4ABH7, E2RDP2, F1MH07, O00411, O95382, P48760, P49753, Q05932, Q1L5Z9, Q29S19, Q2VPK5, Q3U269, Q3U5Q7, Q4KMJ1, Q58CQ5, Q5SPB6, Q643R3, Q66H85, Q684M2, Q68DD2, Q68G58, Q6ICH7, Q6NVG1, Q6PAT0, Q76MJ5, Q80UU1, Q84MC1, Q84QC1, Q86TL0, Q8BKF1, Q8GY54, Q8IUH8, Q8NFF5, Q8R3J5, Q8TDZ2, Q8VDP3
Diamond homologs: B3STU3, P32656, P39163, P87305, Q0IIH4, Q4KMJ1, Q5PPV4, Q5SPB6, Q5ZI66, Q641Z5, Q84MC1, Q84QC1, Q8GY54, Q8R3J5, Q8WUX2, Q9BUX1, Q9CQG1
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
61 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 54 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2685509 | GRCh37/hg19 15q15.1(chr15:41171132-41262130)x1 | Likely pathogenic |
SpliceAI
236 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:40953811:GATG:G | donor_gain | 1.0000 |
| 15:40953813:TG:T | donor_gain | 1.0000 |
| 15:40953814:GG:G | donor_gain | 1.0000 |
| 15:40954226:A:AG | acceptor_gain | 1.0000 |
| 15:40954227:G:GA | acceptor_gain | 1.0000 |
| 15:40954227:GCCT:G | acceptor_gain | 1.0000 |
| 15:40954261:GAG:G | donor_gain | 1.0000 |
| 15:40954264:G:GA | donor_loss | 1.0000 |
| 15:40955367:TCCCA:T | acceptor_loss | 1.0000 |
| 15:40955369:CCAG:C | acceptor_loss | 1.0000 |
| 15:40955371:A:AG | acceptor_gain | 1.0000 |
| 15:40955371:AG:A | acceptor_gain | 1.0000 |
| 15:40955371:AGG:A | acceptor_gain | 1.0000 |
| 15:40955372:G:A | acceptor_gain | 1.0000 |
| 15:40955372:G:GT | acceptor_gain | 1.0000 |
| 15:40955372:GGG:G | acceptor_gain | 1.0000 |
| 15:40955372:GGGC:G | acceptor_gain | 1.0000 |
| 15:40955372:GGGCT:G | acceptor_gain | 1.0000 |
| 15:40953810:AGATG:A | donor_gain | 0.9900 |
| 15:40953811:GATGG:G | donor_gain | 0.9900 |
| 15:40953812:ATG:A | donor_gain | 0.9900 |
| 15:40953813:TGGTG:T | donor_loss | 0.9900 |
| 15:40953814:GGTG:G | donor_loss | 0.9900 |
| 15:40953815:G:GA | donor_loss | 0.9900 |
| 15:40953815:G:GG | donor_gain | 0.9900 |
| 15:40953816:T:G | donor_loss | 0.9900 |
| 15:40953838:G:T | donor_gain | 0.9900 |
| 15:40954224:CTA:C | acceptor_loss | 0.9900 |
| 15:40954226:A:AC | acceptor_loss | 0.9900 |
| 15:40954226:AGCCT:A | acceptor_gain | 0.9900 |
AlphaMissense
1436 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:40953689:T:C | F36L | 0.997 |
| 15:40953691:C:A | F36L | 0.997 |
| 15:40953691:C:G | F36L | 0.997 |
| 15:40953767:C:A | R62S | 0.997 |
| 15:40955394:T:G | Y97D | 0.997 |
| 15:40955637:T:C | Y178H | 0.997 |
| 15:40955630:C:A | N175K | 0.996 |
| 15:40955630:C:G | N175K | 0.996 |
| 15:40953693:G:A | G37E | 0.995 |
| 15:40953710:T:A | W43R | 0.995 |
| 15:40953710:T:C | W43R | 0.995 |
| 15:40955449:A:T | E115V | 0.995 |
| 15:40955450:G:C | E115D | 0.995 |
| 15:40955450:G:T | E115D | 0.995 |
| 15:40955658:T:C | F185L | 0.995 |
| 15:40955660:C:A | F185L | 0.995 |
| 15:40955660:C:G | F185L | 0.995 |
| 15:40953771:G:C | R63P | 0.994 |
| 15:40954234:C:A | R80S | 0.994 |
| 15:40954247:T:A | L84H | 0.994 |
| 15:40955638:A:G | Y178C | 0.994 |
| 15:40953690:T:C | F36S | 0.993 |
| 15:40953692:G:T | G37W | 0.993 |
| 15:40953699:G:T | G39V | 0.993 |
| 15:40953723:T:C | F47S | 0.993 |
| 15:40953773:T:C | F64L | 0.993 |
| 15:40953774:T:C | F64S | 0.993 |
| 15:40953775:C:A | F64L | 0.993 |
| 15:40953775:C:G | F64L | 0.993 |
| 15:40953798:G:C | R72P | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000937593 (15:40952624 G>T), RS1001040924 (15:40952847 C>G,T), RS1001093196 (15:40952981 C>G,T), RS1001359021 (15:40954672 T>C), RS1001408232 (15:40952215 C>T), RS1001810042 (15:40955091 C>G), RS1002395954 (15:40953594 A>T), RS1002407987 (15:40953493 C>A,G,T), RS1002763814 (15:40953357 G>A), RS1003402775 (15:40955108 G>A,T), RS1004254267 (15:40956769 G>T), RS1004926883 (15:40951743 C>T), RS1005853436 (15:40953059 C>T), RS1005992102 (15:40952037 C>A,T), RS1006086955 (15:40952383 G>A)
Disease associations
OMIM: gene MIM:614587 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001524_12 | Visceral adipose tissue/subcutaneous adipose tissue ratio | 3.000000e-06 |
| GCST007429_129 | Lung function (FVC) | 3.000000e-13 |
| GCST007432_54 | FEV1 | 5.000000e-08 |
| GCST010725_23 | Malaria | 2.000000e-06 |
| GCST010725_38 | Malaria | 3.000000e-06 |
| GCST010725_80 | Malaria | 7.000000e-06 |
| GCST90020029_283 | Waist circumference adjusted for body mass index | 1.000000e-08 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004767 | visceral:subcutaneous adipose tissue ratio |
| EFO:0004312 | vital capacity |
| EFO:0004314 | forced expiratory volume |
| EFO:0007789 | BMI-adjusted waist circumference |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
149 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 7 |
| Cyclosporine | increases expression | 5 |
| bisphenol A | decreases expression, increases expression, affects expression, affects cotreatment, increases methylation | 4 |
| perfluorooctanoic acid | increases expression | 3 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 3 |
| perfluorooctane sulfonic acid | increases expression | 3 |
| Arsenic Trioxide | increases expression | 3 |
| Cisplatin | affects cotreatment, increases expression | 3 |
| Tunicamycin | increases expression | 3 |
| Particulate Matter | increases abundance, increases expression, affects cotreatment, decreases expression | 3 |
| arsenite | affects binding, increases reaction, increases abundance, increases expression | 2 |
| tetrabromobisphenol A | increases expression | 2 |
| ochratoxin A | affects expression, decreases expression | 2 |
| hydroquinone | decreases expression, increases expression | 2 |
| entinostat | decreases expression, increases expression, affects cotreatment | 2 |
| Acetaminophen | increases expression | 2 |
| Ethanol | increases expression, affects cotreatment, increases abundance | 2 |
| Amiodarone | increases expression | 2 |
| Hexachlorocyclohexane | increases expression | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Cannabidiol | affects cotreatment, increases expression | 2 |
| Copper | affects binding, increases expression | 2 |
| Cyclophosphamide | decreases expression | 2 |
| Drugs, Chinese Herbal | increases expression | 2 |
| Formaldehyde | increases expression | 2 |
| Paraquat | increases expression, affects expression, affects reaction | 2 |
| Valproic Acid | affects expression, increases expression, increases methylation | 2 |
| Zinc | affects cotreatment, increases expression, decreases expression | 2 |
| Cadmium Chloride | increases expression, decreases expression | 2 |
| GSK-J4 | decreases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.