CHD1-DT

Summary

CHD1-DT (CHD1 divergent transcript, HGNC:52907) is a long non-coding RNA gene on chromosome 5q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52907
Approved symbol	CHD1-DT
Name	CHD1 divergent transcript
Location	5q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248489
Ensembl biotype	lncRNA
Entrez	102724810
RNAcentral	URS0000CCE099 — lncRNA, 381 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000513175, ENST00000670964, ENST00000692082, ENST00000693407, ENST00000840877, ENST00000840878, ENST00000840879, ENST00000840880, ENST00000840881, ENST00000840882, ENST00000840883, ENST00000840884, ENST00000840885, ENST00000840886, ENST00000840887, ENST00000840888, ENST00000840889

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000513175 — 3 exons

Exon	Start	End
ENSE00002039160	98929171	98929311
ENSE00002053786	98994807	98995013
ENSE00002076191	98976771	98976900

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 81.48.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.7185 / max 192.6084, expressed in 1705 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
57772	7.9803	1683
57771	0.7382	382

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.48	gold quality
granulocyte	CL:0000094	75.57	gold quality
gastrocnemius	UBERON:0001388	71.49	gold quality
right hemisphere of cerebellum	UBERON:0014890	71.08	gold quality
muscle of leg	UBERON:0001383	71.01	gold quality
right uterine tube	UBERON:0001302	70.91	gold quality
sural nerve	UBERON:0015488	70.91	gold quality
monocyte	CL:0000576	70.66	gold quality
cerebellar hemisphere	UBERON:0002245	70.62	gold quality
cerebellar cortex	UBERON:0002129	70.61	gold quality
pituitary gland	UBERON:0000007	70.59	gold quality
leukocyte	CL:0000738	70.47	gold quality
cerebellum	UBERON:0002037	70.36	gold quality
apex of heart	UBERON:0002098	70.21	gold quality
adenohypophysis	UBERON:0002196	69.83	gold quality
spleen	UBERON:0002106	69.39	gold quality
blood	UBERON:0000178	69.25	gold quality
left ovary	UBERON:0002119	69.18	gold quality
endometrium	UBERON:0001295	69.07	gold quality
left lobe of thyroid gland	UBERON:0001120	68.91	gold quality
body of uterus	UBERON:0009853	68.86	gold quality
lower esophagus mucosa	UBERON:0035834	68.64	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.48	gold quality
thyroid gland	UBERON:0002046	68.47	gold quality
nucleus accumbens	UBERON:0001882	68.46	gold quality
myometrium	UBERON:0001296	68.29	gold quality
left coronary artery	UBERON:0001626	68.25	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	68.21	gold quality
right lobe of thyroid gland	UBERON:0001119	68.19	gold quality
metanephros cortex	UBERON:0010533	68.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.89

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.