CHD4-AS1

Summary

CHD4-AS1 (CHD4 antisense RNA 1, HGNC:58242) is a long non-coding RNA gene on chromosome 12p13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58242
Approved symbol	CHD4-AS1
Name	CHD4 antisense RNA 1
Location	12p13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000247853
Ensembl biotype	lncRNA
Entrez	139355233
RNAcentral	URS00003E04E5 — lncRNA, 2196 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000501075

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000501075 — 2 exons

Exon	Start	End
ENSE00001981114	6582644	6584739
ENSE00001984414	6578622	6578721

Expression profiles

Bgee: expression breadth ubiquitous, 152 present calls, max score 77.96.

Top tissues by expression

241 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.96	gold quality
bone marrow cell	CL:0002092	72.65	silver quality
monocyte	CL:0000576	65.73	gold quality
colonic epithelium	UBERON:0000397	65.47	silver quality
leukocyte	CL:0000738	65.36	gold quality
granulocyte	CL:0000094	62.69	gold quality
cortical plate	UBERON:0005343	61.60	gold quality
islet of Langerhans	UBERON:0000006	61.01	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.68	gold quality
ganglionic eminence	UBERON:0004023	57.28	silver quality
calcaneal tendon	UBERON:0003701	56.37	gold quality
blood	UBERON:0000178	55.65	gold quality
lower esophagus mucosa	UBERON:0035834	55.65	gold quality
adrenal tissue	UBERON:0018303	55.54	gold quality
tendon	UBERON:0000043	55.28	silver quality
lymph node	UBERON:0000029	55.21	gold quality
oviduct epithelium	UBERON:0004804	55.12	silver quality
lower lobe of lung	UBERON:0008949	55.10	silver quality
mucosa of transverse colon	UBERON:0004991	54.90	gold quality
vermiform appendix	UBERON:0001154	54.72	gold quality
mucosa of stomach	UBERON:0001199	54.05	gold quality
pancreas	UBERON:0001264	53.94	gold quality
right uterine tube	UBERON:0001302	53.58	gold quality
tendon of biceps brachii	UBERON:0008188	53.55	gold quality
bone marrow	UBERON:0002371	53.51	gold quality
tonsil	UBERON:0002372	52.90	gold quality
fallopian tube	UBERON:0003889	52.50	gold quality
stromal cell of endometrium	CL:0002255	52.46	silver quality
smooth muscle tissue	UBERON:0001135	51.88	gold quality
spleen	UBERON:0002106	51.68	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.02

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.