CHKA-DT

Summary

CHKA-DT (CHKA divergent transcript, HGNC:55504) is a long non-coding RNA gene on chromosome 11q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55504
Approved symbol	CHKA-DT
Name	CHKA divergent transcript
Location	11q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255236
Ensembl biotype	lncRNA
Entrez	105369362
RNAcentral	URS00026A1F19 — lncRNA, 1403 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000527519, ENST00000530842, ENST00000802597, ENST00000802598, ENST00000802599

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000527519 — 2 exons

Exon	Start	End
ENSE00004192324	68121624	68122203
ENSE00004192329	68130179	68130523

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 89.31.

Top tissues by expression

117 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.31	gold quality
left testis	UBERON:0004533	74.61	gold quality
testis	UBERON:0000473	74.28	gold quality
right testis	UBERON:0004534	73.97	gold quality
ventricular zone	UBERON:0003053	70.97	gold quality
thymus	UBERON:0002370	70.23	silver quality
quadriceps femoris	UBERON:0001377	69.42	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
cortical plate	UBERON:0005343	66.43	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.91	gold quality
bone marrow	UBERON:0002371	61.69	gold quality
skeletal muscle tissue	UBERON:0001134	59.71	gold quality
superior frontal gyrus	UBERON:0002661	58.83	gold quality
ganglionic eminence	UBERON:0004023	57.19	silver quality
vermiform appendix	UBERON:0001154	56.48	gold quality
liver	UBERON:0002107	55.95	gold quality
prefrontal cortex	UBERON:0000451	55.43	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.80	gold quality
apex of heart	UBERON:0002098	54.64	gold quality
heart left ventricle	UBERON:0002084	53.91	gold quality
right lobe of liver	UBERON:0001114	53.86	gold quality
blood	UBERON:0000178	53.57	silver quality
cortex of kidney	UBERON:0001225	53.31	gold quality
lymph node	UBERON:0000029	52.12	gold quality
metanephros cortex	UBERON:0010533	52.01	gold quality
muscle of leg	UBERON:0001383	51.91	gold quality
monocyte	CL:0000576	51.45	silver quality
heart	UBERON:0000948	51.22	gold quality
kidney	UBERON:0002113	50.95	gold quality
gastrocnemius	UBERON:0001388	50.56	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.