CHMP3-AS1

Summary

CHMP3-AS1 (CHMP3 and RNF103 antisense RNA 1, HGNC:55795) is a long non-coding RNA gene on chromosome 2p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55795
Approved symbol	CHMP3-AS1
Name	CHMP3 and RNF103 antisense RNA 1
Location	2p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228363
Ensembl biotype	lncRNA
Entrez	105374845
RNAcentral	URS00026A1C01 — lncRNA, 527 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000424788, ENST00000426549, ENST00000439077, ENST00000597638, ENST00000725269, ENST00000725270

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424788 — 3 exons

Exon	Start	End
ENSE00001681413	86617176	86618055
ENSE00001714232	86605243	86605435
ENSE00001785255	86604290	86604363

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 88.59.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow	UBERON:0002371	88.59	gold quality
bone marrow cell	CL:0002092	85.94	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.48	gold quality
colonic epithelium	UBERON:0000397	80.90	gold quality
calcaneal tendon	UBERON:0003701	79.93	gold quality
monocyte	CL:0000576	78.85	gold quality
sural nerve	UBERON:0015488	78.26	gold quality
leukocyte	CL:0000738	77.48	gold quality
corpus callosum	UBERON:0002336	73.98	gold quality
skeletal muscle tissue	UBERON:0001134	72.69	gold quality
testis	UBERON:0000473	72.03	gold quality
left testis	UBERON:0004533	71.78	gold quality
right testis	UBERON:0004534	71.76	gold quality
granulocyte	CL:0000094	71.70	gold quality
body of pancreas	UBERON:0001150	71.43	gold quality
smooth muscle tissue	UBERON:0001135	70.25	gold quality
tonsil	UBERON:0002372	70.18	gold quality
mucosa of stomach	UBERON:0001199	69.86	gold quality
small intestine	UBERON:0002108	69.49	gold quality
rectum	UBERON:0001052	69.41	gold quality
duodenum	UBERON:0002114	69.29	gold quality
small intestine Peyer’s patch	UBERON:0003454	68.88	gold quality
tibial nerve	UBERON:0001323	68.79	gold quality
blood	UBERON:0000178	68.70	gold quality
adrenal tissue	UBERON:0018303	68.52	gold quality
pancreas	UBERON:0001264	68.43	gold quality
right hemisphere of cerebellum	UBERON:0014890	68.21	gold quality
left uterine tube	UBERON:0001303	68.14	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.61	gold quality
intestine	UBERON:0000160	67.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.