CHSY3-AS1

Summary

CHSY3-AS1 (CHSY3 antisense RNA 1, HGNC:58253) is a long non-coding RNA gene on chromosome 5q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58253
Approved symbol	CHSY3-AS1
Name	CHSY3 antisense RNA 1
Location	5q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251680
Ensembl biotype	lncRNA
Entrez	112267944
RNAcentral	URS0002A2A2B6 — lncRNA, 3643 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000503616, ENST00000515569, ENST00000653455, ENST00000655036, ENST00000661736, ENST00000670057, ENST00000849201, ENST00000849202

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503616 — 5 exons

Exon	Start	End
ENSE00002040178	129762507	129762669
ENSE00002052953	129500361	129500587
ENSE00002078862	129899461	129899509
ENSE00002080247	129905846	129905917
ENSE00002084884	129734943	129735062

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 77.49.

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	77.49	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.50	gold quality
bone marrow cell	CL:0002092	74.30	gold quality
ventricular zone	UBERON:0003053	65.64	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.08	gold quality
liver	UBERON:0002107	63.91	silver quality
bone marrow	UBERON:0002371	60.08	gold quality
ganglionic eminence	UBERON:0004023	59.63	gold quality
calcaneal tendon	UBERON:0003701	58.02	gold quality
prefrontal cortex	UBERON:0000451	57.93	gold quality
endometrium	UBERON:0001295	57.03	gold quality
superior frontal gyrus	UBERON:0002661	55.05	gold quality
adrenal tissue	UBERON:0018303	54.67	gold quality
monocyte	CL:0000576	54.28	gold quality
frontal cortex	UBERON:0001870	52.34	gold quality
gall bladder	UBERON:0002110	52.26	gold quality
nucleus accumbens	UBERON:0001882	52.22	gold quality
stromal cell of endometrium	CL:0002255	51.88	silver quality
blood	UBERON:0000178	51.76	silver quality
right hemisphere of cerebellum	UBERON:0014890	51.30	gold quality
primary visual cortex	UBERON:0002436	50.80	silver quality
cerebral cortex	UBERON:0000956	50.70	gold quality
lymph node	UBERON:0000029	50.55	gold quality
muscle of leg	UBERON:0001383	49.89	gold quality
cerebellar hemisphere	UBERON:0002245	49.67	gold quality
smooth muscle tissue	UBERON:0001135	49.58	gold quality
Ammon’s horn	UBERON:0001954	49.51	gold quality
Brodmann (1909) area 9	UBERON:0013540	49.51	gold quality
brain	UBERON:0000955	49.49	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.