CIBAR1-DT

Summary

CIBAR1-DT (CIBAR1 divergent transcript, HGNC:43644) is a long non-coding RNA gene on chromosome 8q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43644
Approved symbol	CIBAR1-DT
Name	CIBAR1 divergent transcript
Location	8q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000246662
Ensembl biotype	lncRNA
Entrez	642924
RNAcentral	URS000075B4CF — lncRNA, 1924 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 104 — 104 lncRNA

ENST00000501400, ENST00000517785, ENST00000517796, ENST00000520096, ENST00000520513, ENST00000741087, ENST00000770803, ENST00000770804, ENST00000770805, ENST00000770806, ENST00000770807, ENST00000770808, ENST00000770809, ENST00000770810, ENST00000770811, ENST00000770812, ENST00000770813, ENST00000770814, ENST00000770815, ENST00000770816, ENST00000770817, ENST00000770818, ENST00000770819, ENST00000770820, ENST00000770821, ENST00000770822, ENST00000770823, ENST00000770824, ENST00000770825, ENST00000770826, ENST00000770827, ENST00000770828, ENST00000770829, ENST00000770830, ENST00000770831, ENST00000770832, ENST00000770833, ENST00000770834, ENST00000770835, ENST00000770836, ENST00000770837, ENST00000770838, ENST00000770839, ENST00000770840, ENST00000770841, ENST00000770842, ENST00000770843, ENST00000770844, ENST00000770845, ENST00000770846, ENST00000770847, ENST00000770848, ENST00000770849, ENST00000770850, ENST00000770851, ENST00000770852, ENST00000770853, ENST00000770854, ENST00000770855, ENST00000770856, ENST00000770857, ENST00000770858, ENST00000770859, ENST00000770860, ENST00000770861, ENST00000770862, ENST00000770863, ENST00000770864, ENST00000770865, ENST00000770866, ENST00000770867, ENST00000770868, ENST00000770869, ENST00000770870, ENST00000770871, ENST00000770872, ENST00000770873, ENST00000770874, ENST00000770875, ENST00000770876, ENST00000770877, ENST00000770878, ENST00000770879, ENST00000770880, ENST00000770881, ENST00000770882, ENST00000770883, ENST00000770884, ENST00000770885, ENST00000770887, ENST00000770888, ENST00000770889, ENST00000770890, ENST00000770891, ENST00000770892, ENST00000770893, ENST00000770894, ENST00000770895, ENST00000770896, ENST00000770897, ENST00000770900, ENST00000770901, ENST00000803763, ENST00000803764

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000501400 — 11 exons

Exon	Start	End
ENSE00001962857	93390537	93390665
ENSE00001964268	93699936	93700433
ENSE00001964691	93362520	93362578
ENSE00001964920	93683354	93683431
ENSE00001965112	93663346	93663448
ENSE00001967843	93564022	93564118
ENSE00001973491	93531218	93531305
ENSE00001974866	93659427	93659579
ENSE00001986470	93682543	93682658
ENSE00001989140	93391071	93391223
ENSE00001991462	93346467	93346906

Expression profiles

Bgee: expression breadth ubiquitous, 156 present calls, max score 94.59.

FANTOM5 (CAGE): breadth broad, TPM avg 0.5537 / max 27.5162, expressed in 279 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
93963	0.5537	279

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	94.59	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.60	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.33	gold quality
secondary oocyte	CL:0000655	78.78	silver quality
right testis	UBERON:0004534	74.90	gold quality
left testis	UBERON:0004533	74.33	gold quality
oocyte	CL:0000023	73.13	silver quality
testis	UBERON:0000473	72.49	gold quality
colonic epithelium	UBERON:0000397	68.14	silver quality
hindlimb stylopod muscle	UBERON:0004252	65.64	gold quality
islet of Langerhans	UBERON:0000006	65.56	gold quality
adult organism	UBERON:0007023	64.25	gold quality
right lung	UBERON:0002167	63.92	gold quality
pancreatic ductal cell	CL:0002079	63.31	silver quality
right lobe of liver	UBERON:0001114	61.36	gold quality
ventricular zone	UBERON:0003053	60.18	gold quality
right uterine tube	UBERON:0001302	59.94	gold quality
tibial nerve	UBERON:0001323	59.89	gold quality
cortical plate	UBERON:0005343	59.85	silver quality
gall bladder	UBERON:0002110	59.67	gold quality
stromal cell of endometrium	CL:0002255	59.48	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.14	gold quality
ganglionic eminence	UBERON:0004023	58.58	gold quality
monocyte	CL:0000576	58.18	gold quality
gingival epithelium	UBERON:0001949	58.18	gold quality
endothelial cell	CL:0000115	58.15	gold quality
mucosa of transverse colon	UBERON:0004991	57.81	gold quality
pancreas	UBERON:0001264	57.70	gold quality
prefrontal cortex	UBERON:0000451	57.13	gold quality
skin of hip	UBERON:0001554	56.85	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.40

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.