CKAP2-DT

Summary

CKAP2-DT (CKAP2 divergent transcript, HGNC:56053) is a long non-coding RNA gene on chromosome 13q14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56053
Approved symbol	CKAP2-DT
Name	CKAP2 divergent transcript
Location	13q14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000278238
Ensembl biotype	lncRNA
Entrez	123706541
RNAcentral	URS00026A24E7 — lncRNA, 572 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000614364

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000614364 — 1 exons

Exon	Start	End
ENSE00004089646	52454772	52455403

Expression profiles

Bgee: expression breadth ubiquitous, 157 present calls, max score 93.30.

Top tissues by expression

243 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	93.30	gold quality
left testis	UBERON:0004533	88.70	gold quality
sperm	CL:0000019	88.31	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.10	gold quality
right testis	UBERON:0004534	87.77	gold quality
testis	UBERON:0000473	86.50	gold quality
adult organism	UBERON:0007023	78.79	gold quality
adenohypophysis	UBERON:0002196	77.99	gold quality
pituitary gland	UBERON:0000007	77.13	gold quality
cerebellar hemisphere	UBERON:0002245	77.09	gold quality
cerebellar cortex	UBERON:0002129	76.91	gold quality
right hemisphere of cerebellum	UBERON:0014890	76.35	gold quality
cerebellum	UBERON:0002037	75.46	gold quality
skin of leg	UBERON:0001511	72.99	gold quality
skin of abdomen	UBERON:0001416	72.54	gold quality
ganglionic eminence	UBERON:0004023	71.42	gold quality
zone of skin	UBERON:0000014	71.20	gold quality
Brodmann (1909) area 9	UBERON:0013540	71.02	gold quality
tibialis anterior	UBERON:0001385	70.71	silver quality
bone marrow cell	CL:0002092	70.54	silver quality
right frontal lobe	UBERON:0002810	70.10	gold quality
prefrontal cortex	UBERON:0000451	70.03	gold quality
ventricular zone	UBERON:0003053	70.02	gold quality
bone marrow	UBERON:0002371	69.50	gold quality
monocyte	CL:0000576	69.34	gold quality
anterior cingulate cortex	UBERON:0009835	69.33	gold quality
nucleus accumbens	UBERON:0001882	69.12	gold quality
upper leg skin	UBERON:0004262	67.91	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	67.44	gold quality
neocortex	UBERON:0001950	66.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.