CKMT2-AS1

Summary

CKMT2-AS1 (CKMT2 antisense RNA 1, HGNC:48997) is a long non-coding RNA gene on chromosome 5q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48997
Approved symbol	CKMT2-AS1
Name	CKMT2 antisense RNA 1
Location	5q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000247572
Ensembl biotype	lncRNA
Entrez	100131067
RNAcentral	URS000075F038 — lncRNA, 2740 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000500148, ENST00000501927, ENST00000502041, ENST00000503483, ENST00000505295, ENST00000511495, ENST00000512287, ENST00000656836, ENST00000660242, ENST00000663467, ENST00000663674, ENST00000665093, ENST00000669977, ENST00000670957, ENST00000690798, ENST00000793747, ENST00000793748

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000500148 — 4 exons

Exon	Start	End
ENSE00001973913	81301287	81301544
ENSE00001981547	81246890	81246972
ENSE00001984880	81250703	81250789
ENSE00002051644	81237565	81239360

Expression profiles

Bgee: expression breadth ubiquitous, 241 present calls, max score 91.11.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.8396 / max 198.6107, expressed in 1661 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
62318	3.6163	1375
62319	2.4053	1137
62317	1.8180	995

Top tissues by expression

252 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
oviduct epithelium	UBERON:0004804	91.11	gold quality
buccal mucosa cell	CL:0002336	90.27	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.99	gold quality
calcaneal tendon	UBERON:0003701	83.40	gold quality
sural nerve	UBERON:0015488	82.79	gold quality
tibia	UBERON:0000979	82.69	gold quality
parietal pleura	UBERON:0002400	82.43	gold quality
fallopian tube	UBERON:0003889	82.26	gold quality
ovary	UBERON:0000992	82.15	gold quality
left ovary	UBERON:0002119	82.08	gold quality
right lobe of liver	UBERON:0001114	81.98	gold quality
right ovary	UBERON:0002118	81.62	gold quality
tendon	UBERON:0000043	81.33	gold quality
liver	UBERON:0002107	81.28	gold quality
oocyte	CL:0000023	81.02	gold quality
visceral pleura	UBERON:0002401	80.99	gold quality
colonic epithelium	UBERON:0000397	80.88	gold quality
endocervix	UBERON:0000458	80.66	gold quality
islet of Langerhans	UBERON:0000006	80.46	gold quality
pituitary gland	UBERON:0000007	80.35	gold quality
adenohypophysis	UBERON:0002196	80.27	gold quality
tendon of biceps brachii	UBERON:0008188	79.87	gold quality
amniotic fluid	UBERON:0000173	79.82	gold quality
corpus callosum	UBERON:0002336	79.82	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	79.74	gold quality
uterine cervix	UBERON:0000002	79.70	gold quality
upper arm skin	UBERON:0004263	79.70	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.58	gold quality
left uterine tube	UBERON:0001303	79.52	gold quality
prostate gland	UBERON:0002367	79.45	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.