CLCA4-AS1

Summary

CLCA4-AS1 (CLCA4 antisense RNA 1, HGNC:54055) is a long non-coding RNA gene on chromosome 1p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54055
Approved symbol	CLCA4-AS1
Name	CLCA4 antisense RNA 1
Location	1p22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236915
Ensembl biotype	lncRNA
Entrez	105378828
RNAcentral	URS0000A7729C — lncRNA, 1520 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000456587, ENST00000565575, ENST00000650379, ENST00000699483, ENST00000699484

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000456587 — 4 exons

Exon	Start	End
ENSE00001644543	86693163	86693203
ENSE00001664015	86571181	86571408
ENSE00001698261	86647937	86648047
ENSE00001730740	86650240	86650381

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 77.21.

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
esophagus mucosa	UBERON:0002469	77.21	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.06	gold quality
lower esophagus mucosa	UBERON:0035834	76.33	gold quality
rectum	UBERON:0001052	68.78	gold quality
bone marrow cell	CL:0002092	65.58	silver quality
corpus callosum	UBERON:0002336	64.87	gold quality
esophagus	UBERON:0001043	63.72	gold quality
transverse colon	UBERON:0001157	63.07	gold quality
vagina	UBERON:0000996	61.28	gold quality
skeletal muscle tissue	UBERON:0001134	61.20	gold quality
primary visual cortex	UBERON:0002436	59.85	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.71	gold quality
superior frontal gyrus	UBERON:0002661	59.47	gold quality
right testis	UBERON:0004534	59.43	gold quality
ganglionic eminence	UBERON:0004023	58.67	gold quality
pituitary gland	UBERON:0000007	58.23	gold quality
prefrontal cortex	UBERON:0000451	58.06	gold quality
ventricular zone	UBERON:0003053	57.73	silver quality
testis	UBERON:0000473	57.67	gold quality
adenohypophysis	UBERON:0002196	57.67	gold quality
cortical plate	UBERON:0005343	57.55	silver quality
left testis	UBERON:0004533	57.07	gold quality
bone marrow	UBERON:0002371	56.70	silver quality
frontal cortex	UBERON:0001870	56.63	gold quality
tonsil	UBERON:0002372	56.59	silver quality
Brodmann (1909) area 9	UBERON:0013540	56.11	gold quality
colon	UBERON:0001155	56.01	gold quality
right frontal lobe	UBERON:0002810	55.44	gold quality
nucleus accumbens	UBERON:0001882	55.30	gold quality
omental fat pad	UBERON:0010414	55.21	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.