CLCN7
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Also known as CLC-7OPTA2CLC7PPP1R63
Summary
CLCN7 (Cl-/H+ antiporter 7, HGNC:2025) is a protein-coding gene on chromosome 16p13.3, encoding H(+)/Cl(-) exchange transporter 7 (P51798). Slowly voltage-gated channel mediating the exchange of chloride ions against protons.
The product of this gene belongs to the CLC chloride channel family of proteins. Chloride channels play important roles in the plasma membrane and in intracellular organelles. This gene encodes chloride channel 7. Defects in this gene are the cause of osteopetrosis autosomal recessive type 4 (OPTB4), also called infantile malignant osteopetrosis type 2 as well as the cause of autosomal dominant osteopetrosis type 2 (OPTA2), also called autosomal dominant Albers-Schonberg disease or marble disease autosoml dominant. Osteopetrosis is a rare genetic disease characterized by abnormally dense bone, due to defective resorption of immature bone. OPTA2 is the most common form of osteopetrosis, occurring in adolescence or adulthood.
Source: NCBI Gene 1186 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hypopigmentation, organomegaly, and delayed myelination and development (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 1,460 total — 39 pathogenic, 47 likely-pathogenic
- Phenotypes (HPO): 117
- MANE Select transcript:
NM_001287
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2025 |
| Approved symbol | CLCN7 |
| Name | Cl-/H+ antiporter 7 |
| Location | 16p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CLC-7, OPTA2, CLC7, ClC-7, PPP1R63 |
| Ensembl gene | ENSG00000103249 |
| Ensembl biotype | protein_coding |
| OMIM | 602727 |
| Entrez | 1186 |
Gene structure
Transcript identifiers
Ensembl transcripts: 28 — 17 protein_coding, 9 retained_intron, 1 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000262318, ENST00000382745, ENST00000561665, ENST00000563642, ENST00000563822, ENST00000564568, ENST00000564968, ENST00000565092, ENST00000566812, ENST00000567139, ENST00000567789, ENST00000567836, ENST00000569851, ENST00000699947, ENST00000699948, ENST00000699950, ENST00000892992, ENST00000892993, ENST00000892994, ENST00000892995, ENST00000892996, ENST00000892997, ENST00000892998, ENST00000917692, ENST00000917693, ENST00000917694, ENST00000971708, ENST00000971709
RefSeq mRNA: 2 — MANE Select: NM_001287
NM_001114331, NM_001287
CCDS: CCDS32361
Canonical transcript exons
ENST00000382745 — 25 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000873605 | 1474834 | 1475028 |
| ENSE00001164313 | 1449276 | 1449327 |
| ENSE00001164316 | 1450497 | 1450666 |
| ENSE00001164323 | 1451623 | 1451716 |
| ENSE00001164337 | 1454411 | 1454465 |
| ENSE00001164340 | 1455134 | 1455250 |
| ENSE00001164344 | 1455731 | 1455795 |
| ENSE00001164371 | 1459107 | 1459187 |
| ENSE00001164377 | 1460418 | 1460527 |
| ENSE00001164385 | 1460816 | 1460948 |
| ENSE00001282049 | 1452755 | 1452893 |
| ENSE00001282055 | 1453834 | 1453894 |
| ENSE00002589154 | 1444935 | 1446717 |
| ENSE00003491999 | 1448966 | 1449093 |
| ENSE00003526329 | 1448355 | 1448484 |
| ENSE00003556680 | 1465267 | 1465338 |
| ENSE00003626913 | 1457694 | 1457756 |
| ENSE00003639583 | 1461603 | 1461674 |
| ENSE00003641446 | 1447006 | 1447086 |
| ENSE00003643193 | 1456113 | 1456206 |
| ENSE00003651088 | 1461405 | 1461470 |
| ENSE00003655559 | 1447392 | 1447568 |
| ENSE00003674545 | 1447655 | 1447714 |
| ENSE00003693364 | 1448681 | 1448766 |
| ENSE00003788156 | 1457254 | 1457337 |
Expression profiles
Bgee: expression breadth ubiquitous, 296 present calls, max score 97.61.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 28.5983 / max 542.4659, expressed in 1816 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 155849 | 21.4124 | 1812 |
| 155848 | 6.7009 | 1680 |
| 155845 | 0.3439 | 90 |
| 155847 | 0.1339 | 29 |
| 155846 | 0.0072 | 3 |
Top tissues by expression
299 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| metanephros cortex | UBERON:0010533 | 97.61 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.24 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 97.08 | gold quality |
| right adrenal gland | UBERON:0001233 | 96.91 | gold quality |
| adrenal cortex | UBERON:0001235 | 96.91 | gold quality |
| left adrenal gland | UBERON:0001234 | 96.90 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 96.85 | gold quality |
| stromal cell of endometrium | CL:0002255 | 96.66 | gold quality |
| granulocyte | CL:0000094 | 96.55 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 96.40 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 96.06 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 96.05 | gold quality |
| spleen | UBERON:0002106 | 96.02 | gold quality |
| cerebellar cortex | UBERON:0002129 | 95.96 | gold quality |
| adrenal gland | UBERON:0002369 | 95.76 | gold quality |
| adenohypophysis | UBERON:0002196 | 95.63 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 95.56 | gold quality |
| right frontal lobe | UBERON:0002810 | 95.38 | gold quality |
| thyroid gland | UBERON:0002046 | 95.29 | gold quality |
| pituitary gland | UBERON:0000007 | 95.28 | gold quality |
| body of stomach | UBERON:0001161 | 95.26 | gold quality |
| endocervix | UBERON:0000458 | 95.10 | gold quality |
| left testis | UBERON:0004533 | 95.03 | gold quality |
| skin of leg | UBERON:0001511 | 95.01 | gold quality |
| cerebellum | UBERON:0002037 | 94.96 | gold quality |
| mucosa of stomach | UBERON:0001199 | 94.91 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 94.88 | gold quality |
| monocyte | CL:0000576 | 94.86 | gold quality |
| right testis | UBERON:0004534 | 94.85 | gold quality |
| mononuclear cell | CL:0000842 | 94.78 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.04 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MITF
miRNA regulators (miRDB)
42 targeting CLCN7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
| HSA-MIR-4756-5P | 99.84 | 64.98 | 1809 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-3175 | 99.65 | 66.30 | 2031 |
| HSA-MIR-6797-5P | 99.61 | 66.55 | 2084 |
| HSA-MIR-6132 | 99.60 | 65.83 | 1554 |
| HSA-MIR-6836-5P | 99.60 | 65.62 | 1538 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-4649-3P | 99.56 | 66.90 | 1783 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-128-2-5P | 99.33 | 60.83 | 311 |
| HSA-MIR-128-1-5P | 99.33 | 60.46 | 332 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
| HSA-MIR-4721 | 99.26 | 66.05 | 818 |
| HSA-MIR-5787 | 99.22 | 67.86 | 2628 |
| HSA-MIR-4763-3P | 99.10 | 67.83 | 2649 |
| HSA-MIR-608 | 98.93 | 67.83 | 2013 |
| HSA-MIR-330-5P | 98.73 | 67.63 | 1788 |
| HSA-MIR-423-5P | 98.69 | 67.48 | 1522 |
| HSA-MIR-1227-5P | 98.65 | 65.32 | 1549 |
| HSA-MIR-3184-5P | 98.56 | 67.13 | 1491 |
| HSA-MIR-6776-5P | 98.54 | 67.43 | 1304 |
Literature-anchored findings (GeneRIF, showing 40)
- clcn7 gene mutation is associated with intermediate autosomal recessive osteopetrosis (PMID:12522560)
- mutations in the CICN7 gene are responsible for autosomal dominant osteopetrosis, type II, an uncommon sclerosing bone disorder (PMID:12929941)
- ClCN7 mutations have roles in severe recessive, dominant, and intermediate osteopetrosis (PMID:14584882)
- ClC-7 has a role in causing autosomal dominant osteopetrosis type II (PMID:15111300)
- The study indicates that the V418M polymorphism of CLCN7 contributes to the genetic regulation of femoral neck BMD in women. (PMID:16234969)
- Significant association of CLCN7 polymorphisms with the variance of bone density in postmenopausal women with osteopetrosis. (PMID:16368748)
- Autosomal dominant osteopetrosis caused by mutations in the CLCN7 gene is a frequently symptomatic disease manifested by a high rate of fracture, osteomyelitis, visual loss, and occasional bone marrow failure. (PMID:17164308)
- ClC-7 is a Cl-/H+ antiporter; it constitutes the major Cl- permeability of lysosomes, and it is important in lysosomal acidification. (PMID:18449189)
- Genetic variation in the CLCN7 gene is not a major contributor to the variability in peak BMD at the femoral neck and lumber spine in healthy premenopausal white women and in white men (PMID:18755304)
- These data demonstrate that ClC-7 is essential for bone resorption, via its role in acidification of the lysosomes and resorption lacunae in osteoclasts (PMID:19070589)
- Findings suggest that the novel Glu798FS mutation in exon 25 and R767W in exon 24 in the CLCN7 gene were responsible for autosomal dominant osteopetrosis (type II) in two Chinese patients. (PMID:19288050)
- Mutations in TCIRG1, OSTM1, ClCN7, and TNFRSF11A genes were detected in nine, three, one, and one patientswith infantile malignant osteopetrosis, respectively. (PMID:19507210)
- results suggest that osteoclastic ClC7 Cl(-) channels are activated under extracellar acidification and suppressed in Clcn7 mutant associated with autosomal osteopetrosis type II during bone resorption. (PMID:19543743)
- We report on the fatal clinical course of a 3 year old male Turkish patient suffering from osteopetrosis caused by a homozygous mutation in the chloride channel gene ClCN7 with developing pancytopenia and severe neurological impairment. (PMID:19904698)
- The characterization of 25 unpublished patients has resulted in the identification of 20 novel mutations, including 11 missense mutations, 6 causing premature termination, 1 small deletion and 2 putative splice site defects and clinical heterogeneity. (PMID:19953639)
- That the CLCN7 mutations provoke a phenotype as severe as the one caused by TCIRG1 loss of function suggests the affected residues to be crucial for the function of the ClC-7 chloride channel or chloride/proton-exchanger (PMID:20424301)
- Elevated serum LDH isoenzymes and AST indicate a disturbance (of uncertain clinical significance) within multiple extraosseous tissues when there is CLCN7 deficiency. (PMID:20499337)
- Rat G213R ClC-7 is the analogue of human G215R ClC-7 responsible for autosomal dominant osteopetrosis type II. (PMID:20830208)
- The authors show that both the aminoterminus and transmembrane span of the Ostm1 beta-subunit are required for ClC-7 Cl(-)/H(+)-exchange, whereas the Ostm1 transmembrane domain suffices for its ClC-7-dependent trafficking to lysosomes. (PMID:21527911)
- Eight mutations, including two reported mutations (R767W and E798FS) and six novel mutations (E313K, A316G, R743W, G741R, W127G and S290F), were detected in the CLCN7 gene from 12 living autosomal dominant osteopetrosis type II patients. (PMID:21947783)
- recurrent p.Gly215Arg mutation and novel missense mutations p.Ala299Val and p.Trp319Arg in the CLCN7 gene were responsible for these three Chinese ADO-II families. (PMID:23953223)
- ClC-7 does not appear to be crucially involved in gastric acid secretion, which explains the absence of an osteopetrorickets phenotype in CLCN7-related osteopetrosis. (PMID:24103576)
- analysis demonstrates that CLCN7 and TCIRG1 mutations differentially affect bone matrix mineralization, and that there is a need to modify the current classification of osteopetrosis (PMID:24108692)
- the unusual clinical presentation observed in our patient with a mild clinical onset evolving towards a more serious clinical picture, is associated to two novel mutations on CLCN7 gene. (PMID:25410126)
- Results show that ClC-7 is strongly expressed in OUMS-27,a chondrocyte cell line and is responsible for Cl- current. Its downregulation during the hypoosmotic stress accompanying osteoarthritis progression is part of the complex etiology of the disease. (PMID:25943117)
- present findings suggest that the novel missense mutations V289L and A542V in the CLCN7 gene were responsible for autosomal dominant osteopetrosis (type II) in the two Chinese families. (PMID:26056022)
- The present study identified seven novel mutations of the CLCN7 gene and reported the first case of intermediate autosomal recessive osteopetrosis. with compound heterozygous mutation in the Chinese population. (PMID:26395888)
- study demonstrates a wide heterogeneity in the progression of the phenotypes and expanded the mutational spectrum for the CLCN7 gene (PMID:26477479)
- In this study, whole exome sequencing (WES) was successfully used in six patients with malignant infantile osteopetrosis (MIOP) and identified mutations in four MIOP-related genes (CLCN7, TCIRG1, SNX10, and TNFRSF11A). (PMID:27187610)
- Exome sequencing and Sanger sequencing were conducted in Han Chinese family members, some of whom had typical osteopetrosis, and a novel missense variant c.2350A>T (p.R784W) in the chloride channel 7 gene (CLCN7) was identified. (PMID:27325559)
- we identified a CLCN7 mutation in a family with autosomal dominant osteopetrosis, RTA, renal stones, epilepsy, and blindness. (PMID:27540713)
- The present study revealed three novel mutations, showed the dense but brittle sclerotic bones of an autosomal dominant osteopetrosis type II (OPTA2) patient, characterized OPTA2 symptoms from benign to fatal and reported a rare intermediate case of autosomal recessive 4 in a Chinese population. (PMID:28975865)
- This study was aimed to identify the underlying genetic cause of the disease in a Pakistani family segregating infantile malignant osteopetrosis in autosomal recessive pattern. Two novel homozygous missense variants were found in the same codon 204 of CLCN7 NM_001287.5:c.[610A>T;612C>G] predicting p.(Ser204Trp) variant in the protein. (PMID:29926385)
- CLCN7 mutation is associated with osteopetrosis. (PMID:30431110)
- These findings highlighted the vital role of clcn7 in zebrafish craniofacial bone and tooth development and mineralization, revealing novel insights for the causation of osteopetrosis with CLCN7 mutations. (PMID:30867839)
- Various mutations (R286W, Y746D, Y99C, G793R, E313K, c.22322A>G, P470L and K217X) in the CLCN7 gene were identified in six patients with familial osteopetrosis and one patient with sporadic osteopetrosis. (PMID:30942407)
- p.Tyr715Cys is a gain-of-function CLCN7 variant associated with developmental delay, organomegaly, and hypopigmentation from lysosomal hyperacidity, abnormal storage, and enlarged intracellular vacuoles. (PMID:31155284)
- Cryo-EM structure of the lysosomal chloride-proton exchanger CLC-7 in complex with OSTM1. (PMID:32749217)
- Identification and Characterization of a Novel CLCN7 Variant Associated with Osteopetrosis. (PMID:33105733)
- Pathobiologic Mechanisms of Neurodegeneration in Osteopetrosis Derived From Structural and Functional Analysis of 14 ClC-7 Mutants. (PMID:33125761)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | clcn7 | ENSDARG00000019556 |
| mus_musculus | Clcn7 | ENSMUSG00000036636 |
| rattus_norvegicus | Clcn7 | ENSRNOG00000016976 |
| drosophila_melanogaster | ClC-b | FBGN0033755 |
| caenorhabditis_elegans | WBGENE00000533 |
Paralogs (8): CLCN6 (ENSG00000011021), CLCN4 (ENSG00000073464), CLCN3 (ENSG00000109572), CLCN2 (ENSG00000114859), CLCN5 (ENSG00000171365), CLCNKB (ENSG00000184908), CLCNKA (ENSG00000186510), CLCN1 (ENSG00000188037)
Protein
Protein identifiers
H(+)/Cl(-) exchange transporter 7 — P51798 (reviewed: P51798)
Alternative names: Chloride channel 7 alpha subunit, Chloride channel protein 7
All UniProt accessions (6): A0A8V8TPE0, A0A8V8TQF3, P51798, H0Y2M6, H3BNG8, I3L470
UniProt curated annotations — full annotation on UniProt →
Function. Slowly voltage-gated channel mediating the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen and may be involved in maintaining lysosomal pH. The CLC channel family contains both chloride channels and proton-coupled anion transporters that exchange chloride or another anion for protons. The presence of conserved gating glutamate residues is typical for family members that function as antiporters.
Subunit / interactions. Chloride channel 7 are heteromers of alpha (CLCN7) and beta (OSTM1) subunits.
Subcellular location. Lysosome membrane.
Tissue specificity. Brain and kidney.
Disease relevance. Osteopetrosis, autosomal recessive 4 (OPTB4) [MIM:611490] A rare genetic disease characterized by abnormally dense bone, due to defective resorption of immature bone. Osteopetrosis occurs in two forms: a severe autosomal recessive form occurring in utero, infancy, or childhood, and a benign autosomal dominant form occurring in adolescence or adulthood. Recessive osteopetrosis commonly manifests in early infancy with macrocephaly, feeding difficulties, evolving blindness and deafness, bone marrow failure, severe anemia, and hepatosplenomegaly. Deafness and blindness are generally thought to represent effects of pressure on nerves. The disease is caused by variants affecting the gene represented in this entry. Osteopetrosis, autosomal dominant 2 (OPTA2) [MIM:166600] A rare genetic disease characterized by abnormally dense bone, due to defective resorption of immature bone. Osteopetrosis occurs in two forms: a severe autosomal recessive form occurring in utero, infancy, or childhood, and a benign autosomal dominant form occurring in adolescence or adulthood. OPTA2 is the most common form of osteopetrosis, occurring in adolescence or adulthood. It is characterized by sclerosis, predominantly involving the spine, the pelvis and the skull base. The disease is caused by variants affecting the gene represented in this entry. Hypopigmentation, organomegaly, and delayed myelination and development (HOD) [MIM:618541] An autosomal dominant pleiotropic syndrome characterized by skin and hair hypopigmentation, growth and developmental delay, organomegaly including enlarged liver, spleen and kidneys, delayed brain myelination and developmental deficit in motor skills. Skin and liver biopsies show cellular accumulation of large intracellular vacuoles. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the chloride channel (TC 2.A.49) family. ClC-7/CLCN7 subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P51798-1 | 1 | yes |
| P51798-2 | 2 |
RefSeq proteins (2): NP_001107803, NP_001278* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000644 | CBS_dom | Domain |
| IPR001807 | ClC | Family |
| IPR002249 | CIC-7 | Family |
| IPR014743 | Cl-channel_core | Homologous_superfamily |
| IPR046342 | CBS_dom_sf | Homologous_superfamily |
| IPR051280 | Cl-channel/antiporter | Family |
Pfam: PF00571, PF00654
Catalyzed reactions (Rhea), 1 shown:
- 2 chloride(in) + H(+)(out) = 2 chloride(out) + H(+)(in) (RHEA:29567)
UniProt features (138 total): sequence variant 38, helix 30, strand 23, transmembrane region 10, intramembrane region 7, sequence conflict 7, binding site 5, turn 3, short sequence motif 3, modified residue 3, topological domain 2, domain 2, site 2, chain 1, region of interest 1, splice variant 1
Structure
Experimental structures (PDB)
9 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9G6C | ELECTRON MICROSCOPY | 1.8 |
| 7CQ5 | ELECTRON MICROSCOPY | 2.6 |
| 9G6E | ELECTRON MICROSCOPY | 2.6 |
| 9G6D | ELECTRON MICROSCOPY | 2.7 |
| 7JM7 | ELECTRON MICROSCOPY | 2.82 |
| 7CQ6 | ELECTRON MICROSCOPY | 3 |
| 7CQ7 | ELECTRON MICROSCOPY | 3.55 |
| 8HVT | ELECTRON MICROSCOPY | 3.6 |
| 7BXU | ELECTRON MICROSCOPY | 3.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P51798-F1 | 80.94 | 0.44 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 247 (mediates proton transfer from the outer aqueous phase to the interior of the protein; involved in linking h(+) and cl(-) transport); 314 (mediates proton transfer from the protein to the inner aqueous phase)
Ligand- & substrate-binding residues (5): 204; 514; 602; 658–660; 783–786
Post-translational modifications (3): 9, 60, 801
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-2672351 | Stimuli-sensing channels |
MSigDB gene sets: 421 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_UP, GOCC_VACUOLAR_MEMBRANE, GOBP_INORGANIC_ANION_TRANSPORT, CHANDRAN_METASTASIS_DN, GOBP_MONOATOMIC_CATION_TRANSPORT, GCM_PRKCG, JAZAG_TGFB1_SIGNALING_DN, GOBP_CHLORIDE_TRANSPORT, GOBP_TRANSEPITHELIAL_TRANSPORT, GOMF_PROTON_TRANSMEMBRANE_TRANSPORTER_ACTIVITY, GOBP_RESPONSE_TO_ABIOTIC_STIMULUS, GOBP_RESPONSE_TO_PH, DOUGLAS_BMI1_TARGETS_DN, MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN, GCM_VAV1
GO Biological Process (7): response to pH (GO:0009268), transepithelial chloride transport (GO:0030321), chloride transmembrane transport (GO:1902476), monoatomic ion transport (GO:0006811), chloride transport (GO:0006821), transmembrane transport (GO:0055085), proton transmembrane transport (GO:1902600)
GO Molecular Function (7): chloride channel activity (GO:0005254), ATP binding (GO:0005524), chloride:proton antiporter activity (GO:0062158), nucleotide binding (GO:0000166), protein binding (GO:0005515), chloride transmembrane transporter activity (GO:0015108), antiporter activity (GO:0015297)
GO Cellular Component (4): lysosomal membrane (GO:0005765), membrane (GO:0016020), chloride channel complex (GO:0034707), lysosome (GO:0005764)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Ion channel transport | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| chloride transport | 2 |
| transport | 2 |
| chloride transmembrane transporter activity | 2 |
| response to abiotic stimulus | 1 |
| transepithelial transport | 1 |
| monoatomic anion transmembrane transport | 1 |
| monoatomic anion transport | 1 |
| inorganic anion transport | 1 |
| cellular process | 1 |
| monoatomic cation transmembrane transport | 1 |
| monoatomic anion channel activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| solute:inorganic anion antiporter activity | 1 |
| proton transmembrane transporter activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| monoatomic anion transmembrane transporter activity | 1 |
| chloride transmembrane transport | 1 |
| secondary active transmembrane transporter activity | 1 |
| lysosome | 1 |
| lytic vacuole membrane | 1 |
| cellular anatomical structure | 1 |
| monoatomic ion channel complex | 1 |
| lytic vacuole | 1 |
Protein interactions and networks
STRING
1613 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CLCN7 | OSTM1 | Q86WC4 | 999 |
| CLCN7 | TCIRG1 | Q13488 | 965 |
| CLCN7 | PLEKHM1 | Q9Y4G2 | 908 |
| CLCN7 | ATP4A | P20648 | 834 |
| CLCN7 | ATP12A | P54707 | 826 |
| CLCN7 | CA2 | P00918 | 804 |
| CLCN7 | TNFRSF11A | Q9Y6Q6 | 772 |
| CLCN7 | TNFSF11 | O14788 | 768 |
| CLCN7 | SNX10 | Q9Y5X0 | 719 |
| CLCN7 | CTSK | P43235 | 687 |
| CLCN7 | LRP5 | O75197 | 650 |
| CLCN7 | MCOLN1 | Q9GZU1 | 597 |
| CLCN7 | HEPACAM | Q14CZ8 | 593 |
| CLCN7 | ACP5 | P13686 | 576 |
| CLCN7 | SYT7 | O43581 | 566 |
IntAct
149 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| STK25 | STRN | psi-mi:“MI:0914”(association) | 0.900 |
| OSTM1 | CLCN7 | psi-mi:“MI:0407”(direct interaction) | 0.790 |
| OSTM1 | CLCN7 | psi-mi:“MI:0915”(physical association) | 0.790 |
| CLCN7 | OSTM1 | psi-mi:“MI:0915”(physical association) | 0.790 |
| CDH1 | CTNND1 | psi-mi:“MI:0914”(association) | 0.730 |
| BIRC7 | HTRA2 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFA13 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| CLCN7 | LHFPL5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | SLC38A7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OPRM1 | CLCN7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | GDAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD53 | CLCN7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | AQP7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | KCNN3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | LYVE1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | SLC66A2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | TMEM179B | psi-mi:“MI:0915”(physical association) | 0.560 |
| GET1 | CLCN7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | TLCD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | GLE1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLCN7 | SPRED1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC15A4 | CLCN7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MANSC1 | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (229): CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS), CLCN7 (Proximity Label-MS), CLCN7 (Proximity Label-MS), CLCN7 (Proximity Label-MS), CLCN7 (Two-hybrid), CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS), CLCN7 (Affinity Capture-MS)
ESM2 similar proteins: A6NFX1, A6QQL0, D2HKB0, D3ZG27, F1NCD6, F1NJ67, O09014, O70496, O82390, P51798, P51799, Q17QZ3, Q1JQC1, Q32LQ6, Q3T9M1, Q3T9X0, Q3TIT8, Q4PKH3, Q504N2, Q58CV5, Q5F3N0, Q5R8G5, Q5RB09, Q5T4D3, Q5ZIT9, Q5ZKS8, Q66H95, Q68F72, Q69YG0, Q6AY78, Q6PDE8, Q7SY29, Q8BFQ6, Q8BG19, Q8GX78, Q8IVW8, Q8IZD6, Q8N697, Q8NCC5, Q8NEB5
Diamond homologs: O35454, O70496, P0C197, P51793, P51794, P51795, P51796, P51797, P51798, P51799, P92942, P92943, Q1ZXJ0, Q4PKH3, Q54AX6, Q5RBK4, Q61418, Q75JF3, Q86AZ6, Q8XTT4, Q96282, Q99P66, Q9GKE7, Q9TT16, Q9TTU3, Q9WVD4, O18894, P51790, P51791, P51792, P60300, P92941, Q5RDJ7, Q9R279, O60159, O94287, P35523, P35524, P37020, Q64347
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TFEB | “up-regulates quantity by expression” | CLCN7 | “transcriptional regulation” |
| TFE3 | “up-regulates quantity by expression” | CLCN7 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 153 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Neutrophil degranulation | 18 | 4.6× | 3e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1460 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 39 |
| Likely pathogenic | 47 |
| Uncertain significance | 531 |
| Likely benign | 592 |
| Benign | 128 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1012215 | NM_001287.6(CLCN7):c.952T>C (p.Phe318Leu) | Pathogenic |
| 1065115 | NM_001287.6(CLCN7):c.1561G>A (p.Gly521Arg) | Pathogenic |
| 1410271 | NC_000016.9:g.(?1507235)(1524975_?)del | Pathogenic |
| 1453932 | NM_001287.6(CLCN7):c.746C>T (p.Pro249Leu) | Pathogenic |
| 1458929 | NM_001287.6(CLCN7):c.718G>A (p.Gly240Arg) | Pathogenic |
| 1459594 | NC_000016.10:g.1457356_1457357insATGCTCAGAGACACGCGTGACGCGGCCCTTCCTGGAGACCAGAAGGACCG | Pathogenic |
| 1675596 | NM_001287.6(CLCN7):c.1424dup (p.Ser476fs) | Pathogenic |
| 1685637 | NM_001287.6(CLCN7):c.2066del (p.Lys689fs) | Pathogenic |
| 1685638 | NM_001287.6(CLCN7):c.1562G>C (p.Gly521Ala) | Pathogenic |
| 1701268 | NM_001287.6(CLCN7):c.2053_2072delinsT (p.Ile685fs) | Pathogenic |
| 2012245 | NM_001287.6(CLCN7):c.1612dup (p.Ala538fs) | Pathogenic |
| 2014467 | NM_001287.6(CLCN7):c.2049dup (p.Leu684fs) | Pathogenic |
| 2025971 | NM_001287.6(CLCN7):c.381G>A (p.Trp127Ter) | Pathogenic |
| 2036195 | NM_001287.6(CLCN7):c.512del (p.Gly171fs) | Pathogenic |
| 2049877 | NM_001287.6(CLCN7):c.1147_1148insA (p.Val383fs) | Pathogenic |
| 2128622 | NM_001287.6(CLCN7):c.1270dup (p.Thr424fs) | Pathogenic |
| 2137755 | NM_001287.6(CLCN7):c.869C>T (p.Ser290Phe) | Pathogenic |
| 2137756 | NM_001287.6(CLCN7):c.811C>T (p.Arg271Ter) | Pathogenic |
| 2424116 | NC_000016.9:g.(?1496632)(1524975_?)del | Pathogenic |
| 2664512 | NM_001287.6(CLCN7):c.892dup (p.Ser298fs) | Pathogenic |
| 2736274 | NM_001287.6(CLCN7):c.637C>T (p.Leu213Phe) | Pathogenic |
| 2840563 | NM_001287.6(CLCN7):c.282T>G (p.Tyr94Ter) | Pathogenic |
| 2846756 | NM_001287.6(CLCN7):c.259G>T (p.Glu87Ter) | Pathogenic |
| 2852015 | NM_001287.6(CLCN7):c.1331dup (p.Ser445fs) | Pathogenic |
| 3243623 | NC_000016.9:g.(?1524815)(1524975_?)del | Pathogenic |
| 3721940 | NM_001287.6(CLCN7):c.2250+1G>A | Pathogenic |
| 3721941 | NM_001287.6(CLCN7):c.2134C>T (p.Arg712Ter) | Pathogenic |
| 372326 | NM_001287.6(CLCN7):c.2144A>G (p.Tyr715Cys) | Pathogenic |
| 3901171 | NM_001287.6(CLCN7):c.797C>G (p.Ser266Ter) | Pathogenic |
| 4688721 | NM_001287.6(CLCN7):c.1828_1829del (p.Ser610fs) | Pathogenic |
SpliceAI
5383 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:1447000:GCTCA:G | donor_loss | 1.0000 |
| 16:1447001:CTCA:C | donor_loss | 1.0000 |
| 16:1447002:TCA:T | donor_loss | 1.0000 |
| 16:1447003:CACC:C | donor_loss | 1.0000 |
| 16:1447005:C:CT | donor_loss | 1.0000 |
| 16:1447082:GCCTC:G | acceptor_gain | 1.0000 |
| 16:1447083:CCTCC:C | acceptor_gain | 1.0000 |
| 16:1447084:CTC:C | acceptor_gain | 1.0000 |
| 16:1447085:TC:T | acceptor_gain | 1.0000 |
| 16:1447085:TCC:T | acceptor_loss | 1.0000 |
| 16:1447086:CC:C | acceptor_gain | 1.0000 |
| 16:1447086:CCT:C | acceptor_loss | 1.0000 |
| 16:1447087:C:CC | acceptor_gain | 1.0000 |
| 16:1447091:A:T | acceptor_gain | 1.0000 |
| 16:1447377:ATGC:A | donor_gain | 1.0000 |
| 16:1447424:A:AC | donor_gain | 1.0000 |
| 16:1447425:C:CC | donor_gain | 1.0000 |
| 16:1447448:C:CA | donor_gain | 1.0000 |
| 16:1447456:T:TA | donor_gain | 1.0000 |
| 16:1447564:AACAC:A | acceptor_gain | 1.0000 |
| 16:1447565:ACAC:A | acceptor_gain | 1.0000 |
| 16:1447566:CAC:C | acceptor_gain | 1.0000 |
| 16:1447566:CACC:C | acceptor_gain | 1.0000 |
| 16:1447567:AC:A | acceptor_gain | 1.0000 |
| 16:1447568:CC:C | acceptor_gain | 1.0000 |
| 16:1447568:CCT:C | acceptor_loss | 1.0000 |
| 16:1447569:C:CC | acceptor_gain | 1.0000 |
| 16:1447577:G:T | acceptor_gain | 1.0000 |
| 16:1447651:GCAC:G | donor_loss | 1.0000 |
| 16:1447652:CA:C | donor_loss | 1.0000 |
AlphaMissense
5211 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:1446698:C:A | R784M | 1.000 |
| 16:1446710:C:T | G780E | 1.000 |
| 16:1447031:A:G | L769P | 1.000 |
| 16:1447043:C:T | G765D | 1.000 |
| 16:1447665:A:G | L688P | 1.000 |
| 16:1447677:A:G | L684P | 1.000 |
| 16:1449046:C:G | A573P | 1.000 |
| 16:1449057:A:T | I569N | 1.000 |
| 16:1449060:A:T | V568D | 1.000 |
| 16:1449066:A:G | L566P | 1.000 |
| 16:1449068:G:C | S565R | 1.000 |
| 16:1449068:G:T | S565R | 1.000 |
| 16:1449070:T:G | S565R | 1.000 |
| 16:1449278:A:G | L556P | 1.000 |
| 16:1449284:G:T | A554D | 1.000 |
| 16:1449293:C:T | G551E | 1.000 |
| 16:1449294:C:G | G551R | 1.000 |
| 16:1449294:C:T | G551R | 1.000 |
| 16:1450540:C:T | G525D | 1.000 |
| 16:1450541:C:G | G525R | 1.000 |
| 16:1450544:A:G | W524R | 1.000 |
| 16:1450544:A:T | W524R | 1.000 |
| 16:1450552:C:T | G521E | 1.000 |
| 16:1450553:C:A | G521W | 1.000 |
| 16:1450553:C:G | G521R | 1.000 |
| 16:1450553:C:T | G521R | 1.000 |
| 16:1450561:A:G | L518P | 1.000 |
| 16:1450580:C:A | G512W | 1.000 |
| 16:1455757:A:G | W319R | 1.000 |
| 16:1455757:A:T | W319R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000097648 (16:1450276 G>A), RS1000174399 (16:1457520 C>T), RS1000196945 (16:1448878 C>CG), RS1000227977 (16:1453690 G>C), RS1000272517 (16:1475598 C>T), RS1000347390 (16:1461124 C>T), RS1000353389 (16:1448724 G>T), RS1000716923 (16:1469195 G>C,T), RS1000729201 (16:1467216 C>G,T), RS1000742672 (16:1473679 C>A), RS1000748555 (16:1469063 G>A,C), RS1000908314 (16:1463456 A>T), RS1000952334 (16:1447539 C>G,T), RS1000965846 (16:1454658 G>A), RS1001180202 (16:1447306 C>A,G,T)
Disease associations
OMIM: gene MIM:602727 | disease phenotypes: MIM:166600, MIM:611490, MIM:618541, MIM:259700, MIM:266920
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal dominant osteopetrosis 2 | Definitive | Autosomal dominant |
| autosomal recessive osteopetrosis 4 | Definitive | Autosomal recessive |
| hypopigmentation, organomegaly, and delayed myelination and development | Strong | Autosomal dominant |
| autosomal recessive osteopetrosis 6 | Supportive | Autosomal recessive |
| autosomal recessive osteopetrosis | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (3)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| hypopigmentation, organomegaly, and delayed myelination and development | Definitive | AD |
| autosomal dominant osteopetrosis 2 | Definitive | AD |
| autosomal recessive osteopetrosis 4 | Definitive | AR |
Mondo (9): autosomal dominant osteopetrosis 2 (MONDO:0008156), autosomal recessive osteopetrosis 4 (MONDO:0012676), hypopigmentation, organomegaly, and delayed myelination and development (MONDO:0032805), bone disorder (MONDO:0005381), autosomal recessive osteopetrosis (MONDO:0019026), osteopetrosis (MONDO:0017198), short-rib thoracic dysplasia 9 with or without polydactyly (MONDO:0009964), connective tissue disorder (MONDO:0003900), autosomal recessive osteopetrosis 6 (MONDO:0012679)
Orphanet (5): Albers-Schönberg osteopetrosis (Orphanet:53), Autosomal recessive malignant osteopetrosis (Orphanet:667), Rare bone disease related to a common gene or pathway defect (Orphanet:364803), Osteopetrosis and related disorders (Orphanet:2781), Saldino-Mainzer syndrome (Orphanet:140969)
HPO phenotypes
117 total (30 of 117 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000164 | Abnormality of the dentition |
| HP:0000238 | Hydrocephalus |
| HP:0000256 | Macrocephaly |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000365 | Hearing impairment |
| HP:0000388 | Otitis media |
| HP:0000505 | Visual impairment |
| HP:0000543 | Optic disc pallor |
| HP:0000572 | Visual loss |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000649 | Abnormality of visual evoked potentials |
| HP:0000670 | Carious teeth |
| HP:0000684 | Delayed eruption of teeth |
| HP:0000689 | Dental malocclusion |
| HP:0000707 | Abnormality of the nervous system |
| HP:0000772 | Abnormal rib morphology |
| HP:0000774 | Narrow chest |
| HP:0000944 | Abnormal metaphysis morphology |
| HP:0000954 | Single transverse palmar crease |
| HP:0000957 | Cafe-au-lait spot |
| HP:0000967 | Petechiae |
| HP:0000978 | Bruising susceptibility |
| HP:0000980 | Pallor |
| HP:0001010 | Hypopigmentation of the skin |
| HP:0001272 | Cerebellar atrophy |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010002_107 | Refractive error | 6.000000e-18 |
| GCST010481_10 | Acute anterior uveitis in ankylosing spondylitis | 1.000000e-06 |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001847 | Bone Diseases | C05.116 |
| D003240 | Connective Tissue Diseases | C17.300 |
| D010022 | Osteopetrosis | C05.116.099.708.702.678 |
| C566933 | Osteopetrosis, Autosomal Recessive 4 (supp.) | |
| C566931 | Osteopetrosis, Autosomal Recessive 6 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: other ic — ClC family
Most potent curated ligand interactions (3 total), top 3:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| DIDS | Channel blocker | 4.4 | pIC50 |
| NS5818 | Channel blocker | 4.3 | pIC50 |
| NPPB | Channel blocker | 3.8 | pIC50 |
CTD chemical–gene interactions
48 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases methylation, increases expression, affects expression | 3 |
| Ozone | increases oxidation, increases expression, increases abundance, affects expression, affects cotreatment (+1 more) | 3 |
| sodium arsenite | affects expression, increases expression | 2 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases oxidation, increases expression, increases abundance | 2 |
| apilimod | affects response to substance | 2 |
| Acrolein | affects cotreatment, decreases expression, increases oxidation, increases expression, increases abundance | 2 |
| Air Pollutants | affects cotreatment, decreases expression, increases abundance, increases oxidation, affects expression | 2 |
| Cadmium Chloride | decreases reaction, increases abundance, increases palmitoylation, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | increases expression, affects cotreatment | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases oxidation, increases abundance | 1 |
| mono-(2-ethylhexyl)phthalate | increases abundance, increases methylation | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| cupric chloride | affects expression | 1 |
| coumarin | increases phosphorylation | 1 |
| N,N,N’,N’-tetrakis(2-pyridylmethyl)ethylenediamine | decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| epigallocatechin gallate | increases expression | 1 |
| ginsenoside Rb1 | decreases expression, decreases reaction | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| MT19c compound | decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| alpha-Chlorohydrin | decreases expression, decreases reaction | 1 |
| Atrazine | decreases expression | 1 |
| Vehicle Emissions | decreases methylation | 1 |
Cellosaurus cell lines
6 cell lines: 4 cancer cell line, 2 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1NG | Abcam HeLa CLCN7 KO | Cancer cell line | Female |
| CVCL_E0AB | Ubigene HeLa CLCN7 KO | Cancer cell line | Female |
| CVCL_E1DR | Ubigene U2OS CLCN7 KO | Cancer cell line | Female |
| CVCL_SJ17 | HAP1 CLCN7 (-) | Cancer cell line | Male |
| CVCL_UM44 | BIHi002-A | Induced pluripotent stem cell | Male |
| CVCL_UM45 | BIHi002-B | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
106 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01042158 | PHASE4 | COMPLETED | A Clinical Trial of Ambrisentan and Tadalafil in Pulmonary Arterial Hypertension Associated With Systemic Sclerosis |
| NCT03688191 | PHASE4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04197050 | PHASE4 | UNKNOWN | Effect of Sacubitril/Valsartan on Reduced Right Ventricular Ejection Fraction in Patients With CTD |
| NCT04928586 | PHASE4 | UNKNOWN | Immunosuppressant Combined With Pirfenidone in CTD-ILD |
| NCT05440240 | PHASE4 | RECRUITING | Percutaneous Needle Fasciotomy +/- Corticosteroid Injection for Dupuytren’s Contracture |
| NCT05505409 | PHASE4 | UNKNOWN | Efficacy and Safety of Pirfenidone in CTD-ILD |
| NCT06499233 | PHASE4 | RECRUITING | Efficacy and Safety of Prophylactic Treatment for Pneumocystis Jirovecii Pneumonia in Patients With Autoimmune Inflammatory Rheumatic Disease |
| NCT00004402 | PHASE3 | COMPLETED | Phase III Randomized Study of Interferon Gamma in Children With Severe, Congenital Osteopetrosis |
| NCT00864201 | PHASE3 | UNKNOWN | A Study to Evaluate the Use of Bosentan in Patients With Exercise Induced Pulmonary Arterial Hypertension Associated With Connective Tissue Disease |
| NCT01196091 | PHASE3 | COMPLETED | A Study of LY2127399 in Participants With Systemic Lupus Erythematosus |
| NCT01205438 | PHASE3 | COMPLETED | A Study of LY2127399 in Participants With Systemic Lupus Erythematosus |
| NCT01488708 | PHASE3 | TERMINATED | On Open-Label Study in Participants With Systemic Lupus Erythematosus |
| NCT03626688 | PHASE3 | COMPLETED | A Study Evaluating the Efficacy and Safety of Ralinepag to Improve Treatment Outcomes in PAH Patients |
| NCT03683186 | PHASE3 | ENROLLING_BY_INVITATION | A Study Evaluating the Long-Term Efficacy and Safety of Ralinepag in Subjects With PAH Via an Open-Label Extension |
| NCT04084678 | PHASE3 | TERMINATED | A Study of Ralinepag to Evaluate Effects on Exercise Capacity by CPET in Subjects With WHO Group 1 PH |
| NCT06716606 | PHASE3 | RECRUITING | A Study to Investigate the Long-term Safety and Efficacy of Belimumab in Adults With Interstitial Lung Disease (ILD) Associated With Systemic Sclerosis (SSc) and Other Connective Tissue Diseases (CTD) (BLISSconneCTD-OLE) |
| NCT06917690 | PHASE3 | RECRUITING | A Study to Learn About the Safety and Efficacy of the Drug Oleogel-S10 in Japanese Patients With Epidermolysis Bullosa |
| NCT02584608 | PHASE2 | COMPLETED | Use of ACTIMMUNE in Patients With ADO2 |
| NCT00638820 | PHASE2 | TERMINATED | Reduced Intensity AlloTransplant For Osteopetrosis |
| NCT00968864 | PHASE2 | TERMINATED | T-cell Depleted Alternative Donor Transplantation |
| NCT02171104 | PHASE2 | ACTIVE_NOT_RECRUITING | MT2013-31: Allo HCT for Metabolic Disorders and Severe Osteopetrosis |
| NCT02666768 | PHASE2 | COMPLETED | ACTIMMUNE in Intermediate Osteopetrosis |
| NCT00004357 | PHASE2 | COMPLETED | Absorption of Corticosteroids in Children With Juvenile Dermatomyositis |
| NCT00005675 | PHASE2 | COMPLETED | Oral Type I Collagen for Relieving Scleroderma |
| NCT01808196 | PHASE2 | COMPLETED | Testing Effectiveness of Losartan in Patients With EoE With or Without a CTD |
| NCT02682511 | PHASE2 | ACTIVE_NOT_RECRUITING | Oral Ifetroban to Treat Diffuse Cutaneous Systemic Sclerosis (SSc) or SSc-associated Pulmonary Arterial Hypertension |
| NCT04993885 | PHASE2 | RECRUITING | Avatrombopag in the Treatment of Adult Immune Thrombocytopenia With Autoantibodies |
| NCT05516758 | PHASE2 | TERMINATED | A Study of Peresolimab (LY3462817) in Participants With Moderately-to-Severely Active Rheumatoid Arthritis |
| NCT05998759 | PHASE2 | RECRUITING | Telitacicept for the Treatment of Connective Tissue Disease-associated Thrombocytopenia |
| NCT06104228 | PHASE2 | RECRUITING | 129 Xenon MRI as a Biomarker for Diagnosis and Response to Therapy in Pulmonary Arterial Hypertension (PAH) |
| NCT04525352 | PHASE1 | TERMINATED | A Trial to Evaluate Safety and Efficacy of RP-L401-0120 in Subjects With Infantile Malignant Osteopetrosis |
| NCT00145886 | PHASE1 | TERMINATED | rhPTH Therapy for Low Turnover Bone Fragility |
| NCT01093911 | PHASE1 | COMPLETED | Safety Study of CDP7657 in Healthy Volunteers and Patients With Systemic Lupus Erythematosus (SLE) |
| NCT01764594 | PHASE1 | COMPLETED | Safety Study of CDP7657 in Patients With Systemic Lupus Erythematosus |
| NCT02392130 | PHASE1 | COMPLETED | A Clinical Trial to Assess the Potential of LEO 130852A Gel to Reduce Steroid Induced Skin Atrophy on Healthy Skin |
| NCT03337165 | PHASE1 | COMPLETED | Autologous Tolerogenic Dendritic Cells for Treatment of Patients With Rheumatoid Arthritis |
| NCT03929120 | PHASE1 | COMPLETED | Allogeneic Bone Marrow Mesenchymal Stem Cells for Patients With Interstitial Lung Disease (ILD) & Connective Tissue Disorders (CTD) |
| NCT01166854 | Not specified | RECRUITING | Characterization of Familial Myopathy and Paget Disease of Bone |
| NCT03527511 | Not specified | COMPLETED | Effect of Active Vitamin D and Etelcalcetide on Human Osteoclasts in Patients With Chronic Kidney Disease |
Related Atlas pages
- Associated diseases: autosomal dominant osteopetrosis 2, autosomal recessive osteopetrosis 4, hypopigmentation, organomegaly, and delayed myelination and development, autosomal recessive osteopetrosis 6, autosomal recessive osteopetrosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): anterior uveitis, autosomal dominant osteopetrosis 2, autosomal recessive osteopetrosis, autosomal recessive osteopetrosis 4, autosomal recessive osteopetrosis 6, bone disorder, connective tissue disorder, hypopigmentation, organomegaly, and delayed myelination and development, osteopetrosis, short-rib thoracic dysplasia 9 with or without polydactyly