CLDN10-AS1

Summary

CLDN10-AS1 (CLDN10 antisense RNA 1, HGNC:39907) is a long non-coding RNA gene on chromosome 13q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39907
Approved symbol	CLDN10-AS1
Name	CLDN10 antisense RNA 1
Location	13q32.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223392
Ensembl biotype	lncRNA
Entrez	100874194
RNAcentral	URS000016D86A — lncRNA, 895 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000416909

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416909 — 4 exons

Exon	Start	End
ENSE00001602608	95528492	95528587
ENSE00001639053	95533698	95533910
ENSE00001714327	95497059	95497125
ENSE00001758837	95479444	95479962

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 67.06.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1383 / max 46.9001, expressed in 40 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
137877	0.1134	36
137878	0.0160	7
137879	0.0089	4

Top tissues by expression

184 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lower esophagus mucosa	UBERON:0035834	67.06	gold quality
body of pancreas	UBERON:0001150	64.74	gold quality
pancreas	UBERON:0001264	61.76	gold quality
endocervix	UBERON:0000458	60.71	gold quality
adult mammalian kidney	UBERON:0000082	60.66	gold quality
tonsil	UBERON:0002372	60.35	gold quality
minor salivary gland	UBERON:0001830	59.66	gold quality
saliva-secreting gland	UBERON:0001044	58.82	gold quality
metanephros cortex	UBERON:0010533	58.73	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.78	gold quality
mouth mucosa	UBERON:0003729	56.71	gold quality
kidney	UBERON:0002113	56.13	gold quality
gall bladder	UBERON:0002110	55.61	gold quality
skin of abdomen	UBERON:0001416	55.06	gold quality
cortex of kidney	UBERON:0001225	54.40	gold quality
renal medulla	UBERON:0000362	53.52	gold quality
lower lobe of lung	UBERON:0008949	53.49	silver quality
skin of leg	UBERON:0001511	53.25	gold quality
zone of skin	UBERON:0000014	51.94	gold quality
metanephros	UBERON:0000081	51.57	gold quality
uterine cervix	UBERON:0000002	51.06	gold quality
muscle of leg	UBERON:0001383	50.75	gold quality
islet of Langerhans	UBERON:0000006	50.33	gold quality
lower esophagus muscularis layer	UBERON:0035833	49.95	gold quality
esophagus mucosa	UBERON:0002469	49.80	gold quality
esophagus	UBERON:0001043	49.75	gold quality
monocyte	CL:0000576	49.17	silver quality
nasal cavity mucosa	UBERON:0001826	47.68	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	47.40	gold quality
tibial nerve	UBERON:0001323	47.37	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	48.43
E-ANND-3	no	2.18

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.