CLDN8
gene geneOn this page
Summary
CLDN8 (claudin 8, HGNC:2050) is a protein-coding gene on chromosome 21q22.11, encoding Claudin-8 (P56748). Can associate with other claudins to regulate tight junction structural and functional strand dynamics.
This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining cell polarity and signal transductions. This protein plays important roles in the paracellular cation barrier of the distal renal tubule, and in the paracellular barrier to prevent sodium back-leakage in distal colon. Differential expression of this gene has been observed in colorectal carcinoma and renal cell tumors, and along with claudin-7, is an immunohistochemical marker for the differential diagnosis of chromophobe renal cell carcinoma and renal oncocytoma.
Source: NCBI Gene 9073 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 41 total
- MANE Select transcript:
NM_199328
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2050 |
| Approved symbol | CLDN8 |
| Name | claudin 8 |
| Location | 21q22.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000156284 |
| Ensembl biotype | protein_coding |
| OMIM | 611231 |
| Entrez | 9073 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000399899
RefSeq mRNA: 1 — MANE Select: NM_199328
NM_199328
CCDS: CCDS13587
Canonical transcript exons
ENST00000399899 — 1 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001540688 | 30214006 | 30216097 |
Expression profiles
Bgee: expression breadth ubiquitous, 125 present calls, max score 97.11.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3842 / max 181.0446, expressed in 51 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 190110 | 0.1435 | 32 |
| 190112 | 0.1165 | 34 |
| 190113 | 0.1047 | 32 |
| 190109 | 0.0101 | 4 |
| 190111 | 0.0094 | 5 |
Top tissues by expression
274 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of sigmoid colon | UBERON:0004993 | 97.11 | gold quality |
| nephron tubule | UBERON:0001231 | 95.82 | gold quality |
| parotid gland | UBERON:0001831 | 95.75 | gold quality |
| colonic mucosa | UBERON:0000317 | 94.99 | gold quality |
| rectum | UBERON:0001052 | 94.97 | gold quality |
| renal medulla | UBERON:0000362 | 94.62 | gold quality |
| bronchial epithelial cell | CL:0002328 | 93.06 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 90.79 | gold quality |
| kidney epithelium | UBERON:0004819 | 90.33 | gold quality |
| hair follicle | UBERON:0002073 | 89.93 | gold quality |
| kidney | UBERON:0002113 | 88.90 | gold quality |
| upper leg skin | UBERON:0004262 | 88.85 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 88.18 | gold quality |
| seminal vesicle | UBERON:0000998 | 88.06 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 87.02 | gold quality |
| bronchus | UBERON:0002185 | 86.66 | gold quality |
| skin of hip | UBERON:0001554 | 86.19 | gold quality |
| renal glomerulus | UBERON:0000074 | 86.11 | gold quality |
| mammary duct | UBERON:0001765 | 86.02 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 85.81 | gold quality |
| corpus epididymis | UBERON:0004359 | 84.95 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 84.95 | gold quality |
| buccal mucosa cell | CL:0002336 | 84.63 | silver quality |
| metanephros cortex | UBERON:0010533 | 84.54 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 84.27 | gold quality |
| cauda epididymis | UBERON:0004360 | 84.18 | gold quality |
| minor salivary gland | UBERON:0001830 | 83.74 | gold quality |
| cortex of kidney | UBERON:0001225 | 82.72 | gold quality |
| metanephros | UBERON:0000081 | 82.33 | gold quality |
| mammary gland | UBERON:0001911 | 81.52 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
97 targeting CLDN8, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-6835-3P | 99.93 | 70.49 | 2904 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
Literature-anchored findings (GeneRIF, showing 18)
- CLDN8, clustered with CLDN17 at human chromosome 21q22.11, is a four-transmembrane protein with WWCC motif, defined by W-X(17-22)-W-X(2)-C-X(8-10)-C. (PMID:12736707)
- Differential expression of genes encoding claudins in colorectal cancer suggests that these tight junction proteins may be associated to and involved in tumorigenesis. (PMID:17047970)
- claudin-7 and claudin-8 have potential use as immunohistochemical biomarkers in the differential diagnosis of chromophobe renal cell carcinoma and oncocytoma (PMID:18799195)
- Na(+) absorption is paralleled by claudin-8-mediated sealing of the paracellular barrier to prevent Na(+) back-leakage, supporting steep Na(+) gradients in distal colon. (PMID:19000657)
- the combination of CK7, S100A1 and claudin 8 immunohistochemistry can be useful for classifying tumours of overlapping histology as chromophobe renal cell carcinoma or renal oncocytomas. (PMID:19302533)
- Human Cldn-8 and -14 were shown to convey Clostridium perfringens enterotoxin-mediated cytotoxicity at pathophysiologically relevant concentrations of this toxin, although ~2-to-10-fold less efficiently than Cldn-4. (PMID:23322640)
- the expression of claudin-5 and claudin-9 was down-regulated while the expression of claudin-8 was up-regulated in cervical carcinoma tissues compared with adjacent non-neoplastic tissues. (PMID:26464708)
- High Claudin 8 Contributes to Malignant Proliferation in Osteosarcoma. (PMID:26560196)
- Findings suggest a new mechanistic pathway in inflammatory bowel disease in which MiR-223 functions as a proinflammatory molecule targeting CLDN8 in the IL23 pathway. (PMID:27029486)
- Epithelial barrier dysfunction in lymphocytic colitis occurs through downregulation of claudin-4, -5, and -8, and redistribution of claudin-5 and -8 off the tight junction, which contributes to diarrhea by a leak-flux mechanism. (PMID:28138755)
- these results indicate that CLDN8 functions as an androgen receptordownstream signal to facilitate the progression of prostate cancer (PMID:28474805)
- data support that the tight junction protein claudin 8 exon 1 is a predictor for the plasma levels of IP-10 in MMT patients with urine test positive for morphine (PMID:29145422)
- Low CLDN8 expression is associated with Crohn’s disease. (PMID:29788092)
- the present study revealed the distinct expression profiles of claudin5, 7 and 8 in nonneoplastic mucosal tissues and gastric carcinoma tissues. Furthermore, the expression of these claudin proteins was highly associated with metastatic progression and prognosis in patients with gastric carcinoma (PMID:29901188)
- the findings of the present study demonstrated that the expression levels of CLDN1, 3, 7 and 8 varied between laryngeal squamous carcinoma tissues and nonneoplastic tissues (PMID:31115553)
- MiR-361-5p inhibits cell proliferation and induces cell apoptosis in retinoblastoma by negatively regulating CLDN8. (PMID:31161266)
- MMP1 and CLDN8 were two key genes screened from the differentially expressed genes involved in the pathogenesis of Crohn’s disease. (PMID:31526198)
- Campylobacter concisus Impairs Sodium Absorption in Colonic Epithelium via ENaC Dysfunction and Claudin-8 Disruption. (PMID:31936044)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cldn8.3 | ENSDARG00000099950 |
| mus_musculus | Cldn8 | ENSMUSG00000050520 |
| rattus_norvegicus | Cldn8 | ENSRNOG00000080263 |
Paralogs (22): CLDN11 (ENSG00000013297), CLDN18 (ENSG00000066405), CLDN15 (ENSG00000106404), CLDN16 (ENSG00000113946), CLDN10 (ENSG00000134873), CLDN17 (ENSG00000156282), CLDN14 (ENSG00000159261), CLDN1 (ENSG00000163347), CLDN19 (ENSG00000164007), CLDN3 (ENSG00000165215), CLDN2 (ENSG00000165376), CLDN20 (ENSG00000171217), CLDN22 (ENSG00000177300), CLDN7 (ENSG00000181885), CLDN5 (ENSG00000184113), CLDN6 (ENSG00000184697), CLDN24 (ENSG00000185758), CLDN4 (ENSG00000189143), CLDN9 (ENSG00000213937), CLDN25 (ENSG00000228607), CLDN34 (ENSG00000234469), CLDN23 (ENSG00000253958)
Protein
Protein identifiers
Claudin-8 — P56748 (reviewed: P56748)
All UniProt accessions (2): P56748, A0A0K0K1I9
UniProt curated annotations — full annotation on UniProt →
Function. Can associate with other claudins to regulate tight junction structural and functional strand dynamics. May coassemble with CLDN4 into tight junction strands containing anion-selective channels that convey paracellular chloride permeability in renal collecting ducts. Cannot form tight junction strands on its own.
Subunit / interactions. Can form heteropolymeric strands with other claudins. Directly interacts with TJP1/ZO-1, TJP2/ZO-2 and TJP3/ZO-3. Interacts with CLDN4; forms coassem. Interacts with KLHL3.
Subcellular location. Cell junction. Tight junction. Cell membrane.
Tissue specificity. Expressed in the epididymis, mainly in the caput segment.
Post-translational modifications. Ubiquitinated by the BCR(KLHL3) E3 ubiquitin ligase complex in the kidney, leading to its degradation.
Similarity. Belongs to the claudin family.
RefSeq proteins (1): NP_955360* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004031 | PMP22/EMP/MP20/Claudin | Family |
| IPR006187 | Claudin | Family |
| IPR017974 | Claudin_CS | Conserved_site |
Pfam: PF00822
Catalyzed reactions (Rhea), 4 shown:
- chloride(in) = chloride(out) (RHEA:29823)
- iodide(out) = iodide(in) (RHEA:66324)
- bromide(in) = bromide(out) (RHEA:75383)
- fluoride(in) = fluoride(out) (RHEA:76159)
UniProt features (16 total): topological domain 5, transmembrane region 4, sequence variant 3, region of interest 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P56748-F1 | 79.71 | 0.40 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-420029 | Tight junction interactions |
MSigDB gene sets: 153 (showing top):
FREAC2_01, KEGG_TIGHT_JUNCTION, RODWELL_AGING_KIDNEY_NO_BLOOD_DN, FOXD3_01, GOBP_CELL_CELL_ADHESION, CADWELL_ATG16L1_TARGETS_DN, HFH8_01, FOXJ2_01, HFH3_01, MCBRYAN_PUBERTAL_BREAST_5_6WK_UP, GOCC_APICOLATERAL_PLASMA_MEMBRANE, TURASHVILI_BREAST_DUCTAL_CARCINOMA_VS_DUCTAL_NORMAL_DN, HFH1_01, MODULE_88, AACTTT_UNKNOWN
GO Biological Process (3): cell adhesion (GO:0007155), calcium-independent cell-cell adhesion (GO:0016338), bicellular tight junction assembly (GO:0070830)
GO Molecular Function (3): structural molecule activity (GO:0005198), identical protein binding (GO:0042802), protein binding (GO:0005515)
GO Cellular Component (7): endoplasmic reticulum (GO:0005783), plasma membrane (GO:0005886), bicellular tight junction (GO:0005923), basolateral plasma membrane (GO:0016323), apicolateral plasma membrane (GO:0016327), membrane (GO:0016020), anchoring junction (GO:0070161)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Cell-cell junction organization | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| plasma membrane region | 2 |
| cellular process | 1 |
| cell-cell adhesion | 1 |
| apical junction assembly | 1 |
| tight junction assembly | 1 |
| molecular_function | 1 |
| protein binding | 1 |
| binding | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| apical junction complex | 1 |
| tight junction | 1 |
| basal plasma membrane | 1 |
| cellular anatomical structure | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
831 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CLDN8 | TJP1 | Q07157 | 967 |
| CLDN8 | CLDN12 | P56749 | 929 |
| CLDN8 | TJP3 | O95049 | 915 |
| CLDN8 | OCLN | Q16625 | 913 |
| CLDN8 | TJP2 | Q9UDY2 | 909 |
| CLDN8 | CLDN4 | O14493 | 711 |
| CLDN8 | F11R | Q9Y624 | 654 |
| CLDN8 | CGN | Q9P2M7 | 644 |
| CLDN8 | SAFB | Q15424 | 549 |
| CLDN8 | IL22 | Q9GZX6 | 544 |
| CLDN8 | PATJ | Q8NI35 | 509 |
| CLDN8 | MARVELD2 | Q8N4S9 | 480 |
| CLDN8 | S100A8 | P05109 | 478 |
| CLDN8 | PALS1 | Q8N3R9 | 456 |
| CLDN8 | CLDN23 | Q96B33 | 452 |
IntAct
152 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SYNE4 | CLDN8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KASH5 | CLDN8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | SYNE4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | CLEC17A | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | SMIM3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OPRM1 | CLDN8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | ERGIC3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | ADAM32 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TUSC5 | CLDN8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | PKMYT1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | ARL13B | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | TMEM80 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLDN8 | PDZK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | RADIL | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | HTRA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | GORASP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | TJP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | HTRA3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | LNX2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | GORASP1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | PDZD2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | HTRA2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PATJ | CLDN8 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | FRMPD2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | PATJ | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CLDN8 | HTRA4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ARHGEF12 | CLDN8 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (15): CCDC155 (Two-hybrid), SYNE4 (Two-hybrid), CLDN8 (Affinity Capture-Western), KLHL3 (Affinity Capture-Western), CLDN8 (Two-hybrid), CLDN8 (Two-hybrid), CLDN8 (Two-hybrid), ARL13B (Two-hybrid), TMEM80 (Two-hybrid), TUSC5 (Two-hybrid), CLEC17A (Two-hybrid), ADAM32 (Two-hybrid), SMIM3 (Two-hybrid), TJP1 (Co-localization), TJP1 (Reconstituted Complex)
ESM2 similar proteins: A0A8C0N7E5, C3VMW3, D3ZQJ0, O00501, O14493, O15551, O19005, O35054, O35912, O54942, O88551, O95471, O95484, O95832, P56745, P56746, P56747, P56748, P56750, P78369, Q2HJ22, Q2KIY2, Q3B7N4, Q5E9L0, Q5QT56, Q5R8E5, Q63400, Q6BBL6, Q6DHB5, Q6DHP1, Q6L708, Q765N9, Q8BXA6, Q8N6F1, Q95KM5, Q9D1D1, Q9ET38, Q9JKD6, Q9QYW5, Q9YH90
Diamond homologs: A0A8C0N7E5, A6NM45, C3VMW3, C9JDP6, D3ZQJ0, O00501, O14493, O15551, O19005, O35054, O54942, O75508, O88551, O88552, O95471, O95484, O95500, O95832, P56745, P56746, P56747, P56748, P56750, P56856, P56857, P56880, P57739, P78369, Q0VCN0, Q2HJ22, Q2KIY2, Q3B7N4, Q3MHK4, Q4R3L1, Q5E9L0, Q5I0E5, Q5QT56, Q5R8E5, Q60771, Q63400
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 89 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ras activation upon Ca2+ influx through NMDA receptor | 5 | 50.1× | 2e-06 |
| Unblocking of NMDA receptors, glutamate binding and activation | 5 | 47.7× | 2e-06 |
| Negative regulation of NMDA receptor-mediated neuronal transmission | 5 | 47.7× | 2e-06 |
| Assembly and cell surface presentation of NMDA receptors | 10 | 44.5× | 1e-12 |
| Dopamine Neurotransmitter Release Cycle | 5 | 43.5× | 3e-06 |
| Long-term potentiation | 5 | 41.7× | 3e-06 |
| Neurexins and neuroligins | 11 | 38.0× | 7e-13 |
| Protein-protein interactions at synapses | 7 | 32.6× | 1e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 10 | 69.2× | 6e-14 |
| protein localization to synapse | 6 | 54.7× | 2e-07 |
| receptor clustering | 7 | 52.0× | 1e-08 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 6 | 35.4× | 2e-06 |
| protein-containing complex assembly | 9 | 12.2× | 4e-06 |
| cell-cell adhesion | 9 | 10.9× | 8e-06 |
| regulation of small GTPase mediated signal transduction | 5 | 8.6× | 7e-03 |
| chemical synaptic transmission | 7 | 6.4× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
41 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 36 |
| Likely benign | 2 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
18 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 21:30215260:A:AC | donor_gain | 0.6700 |
| 21:30215261:C:CC | donor_gain | 0.6700 |
| 21:30215257:CTGA:C | donor_gain | 0.6200 |
| 21:30215259:G:T | donor_gain | 0.6100 |
| 21:30215261:CTT:C | donor_gain | 0.6100 |
| 21:30214128:T:C | acceptor_gain | 0.5500 |
| 21:30215256:A:AC | donor_gain | 0.5500 |
| 21:30215257:C:CC | donor_gain | 0.5500 |
| 21:30215263:T:TA | donor_gain | 0.4500 |
| 21:30215262:T:C | donor_gain | 0.4400 |
| 21:30215258:T:C | donor_gain | 0.3600 |
| 21:30215247:A:C | donor_gain | 0.3300 |
| 21:30214128:T:TC | acceptor_gain | 0.3200 |
| 21:30215243:CACAA:C | donor_gain | 0.3200 |
| 21:30215254:A:T | donor_gain | 0.3200 |
| 21:30215248:C:CT | donor_gain | 0.2900 |
| 21:30215249:T:TT | donor_gain | 0.2900 |
| 21:30215244:ACAAC:A | donor_gain | 0.2300 |
AlphaMissense
1474 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 21:30215482:G:C | F148L | 0.993 |
| 21:30215482:G:T | F148L | 0.993 |
| 21:30215484:A:G | F148L | 0.993 |
| 21:30215836:C:A | W30C | 0.992 |
| 21:30215836:C:G | W30C | 0.992 |
| 21:30215781:C:G | G49R | 0.990 |
| 21:30215781:C:T | G49R | 0.990 |
| 21:30215838:A:G | W30R | 0.990 |
| 21:30215838:A:T | W30R | 0.990 |
| 21:30215512:G:C | S138R | 0.987 |
| 21:30215512:G:T | S138R | 0.987 |
| 21:30215514:T:G | S138R | 0.987 |
| 21:30215735:C:G | C64S | 0.987 |
| 21:30215736:A:T | C64S | 0.987 |
| 21:30215441:C:A | G162V | 0.984 |
| 21:30215773:C:A | W51C | 0.983 |
| 21:30215773:C:G | W51C | 0.983 |
| 21:30215421:A:G | W169R | 0.982 |
| 21:30215421:A:T | W169R | 0.982 |
| 21:30215775:A:G | W51R | 0.982 |
| 21:30215775:A:T | W51R | 0.982 |
| 21:30215452:T:A | K158N | 0.979 |
| 21:30215452:T:G | K158N | 0.979 |
| 21:30215765:C:G | C54S | 0.978 |
| 21:30215766:A:T | C54S | 0.978 |
| 21:30215780:C:T | G49E | 0.976 |
| 21:30215441:C:T | G162E | 0.975 |
| 21:30215736:A:G | C64R | 0.975 |
| 21:30215764:G:C | C54W | 0.972 |
| 21:30215821:G:C | F35L | 0.972 |
dbSNP variants (sampled 300 via entrez): RS1000108779 (21:30214467 A>G), RS1000311791 (21:30216133 A>G), RS1000688416 (21:30216327 G>C), RS1001907881 (21:30217601 C>A,T), RS1002553525 (21:30214239 T>C), RS1003117593 (21:30214589 A>G), RS1003153436 (21:30217908 A>G), RS1003459325 (21:30217054 C>T), RS1003531893 (21:30218094 C>T), RS1003992063 (21:30213818 G>C), RS1006329503 (21:30215178 A>C), RS1006404238 (21:30214335 T>C), RS1006647979 (21:30214928 T>C), RS1007004333 (21:30217646 A>G), RS1007075432 (21:30216876 T>C)
Disease associations
OMIM: gene MIM:611231 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000635_20 | Response to statin therapy | 8.000000e-06 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | decreases expression, affects cotreatment, increases expression | 3 |
| sodium arsenite | decreases expression, affects expression | 2 |
| Benzo(a)pyrene | increases expression, affects methylation | 2 |
| Nickel | decreases expression | 2 |
| Testosterone | affects cotreatment, increases expression, decreases expression | 2 |
| bisphenol A | decreases expression | 1 |
| quercitrin | affects expression | 1 |
| trichostatin A | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| hydroquinone | decreases expression | 1 |
| dibenzo(a,l)pyrene | decreases expression | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Azacitidine | increases expression | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Dimethyl Sulfoxide | increases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Progesterone | affects cotreatment, increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Dihydrotestosterone | increases expression | 1 |
| Tetracycline | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Zearalenone | decreases expression | 1 |
| Leuprolide | decreases expression | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Lactic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.