CLEC12A-AS1

Summary

CLEC12A-AS1 (CLEC12A antisense RNA 1, HGNC:53407) is a long non-coding RNA gene on chromosome 12p13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53407
Approved symbol	CLEC12A-AS1
Name	CLEC12A antisense RNA 1
Location	12p13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231560
Ensembl biotype	lncRNA
Entrez	400002
RNAcentral	URS0000A76DEC — lncRNA, 3957 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000420905

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420905 — 3 exons

Exon	Start	End
ENSE00001668132	9952550	9953336
ENSE00001677385	9948137	9950127
ENSE00001679716	9950902	9952079

Expression profiles

Bgee: expression breadth broad, 88 present calls, max score 59.32.

Top tissues by expression

88 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
skeletal muscle tissue	UBERON:0001134	59.32	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.43	gold quality
pancreas	UBERON:0001264	57.92	gold quality
leukocyte	CL:0000738	56.40	gold quality
urinary bladder	UBERON:0001255	56.34	silver quality
muscle of leg	UBERON:0001383	56.23	gold quality
gastrocnemius	UBERON:0001388	55.84	gold quality
monocyte	CL:0000576	55.80	gold quality
granulocyte	CL:0000094	55.24	gold quality
liver	UBERON:0002107	52.54	silver quality
blood	UBERON:0000178	52.04	gold quality
small intestine	UBERON:0002108	51.89	gold quality
endometrium	UBERON:0001295	50.01	gold quality
duodenum	UBERON:0002114	49.81	gold quality
bone marrow	UBERON:0002371	49.35	silver quality
kidney	UBERON:0002113	49.27	silver quality
myometrium	UBERON:0001296	49.08	silver quality
stomach	UBERON:0000945	48.17	silver quality
placenta	UBERON:0001987	48.15	gold quality
prostate gland	UBERON:0002367	47.91	silver quality
vermiform appendix	UBERON:0001154	47.37	silver quality
gall bladder	UBERON:0002110	46.07	silver quality
right lobe of liver	UBERON:0001114	45.80	silver quality
multicellular organism	UBERON:0000468	45.77	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	45.26	silver quality
prefrontal cortex	UBERON:0000451	44.59	silver quality
lung	UBERON:0002048	44.58	silver quality
anterior cingulate cortex	UBERON:0009835	44.21	gold quality
intestine	UBERON:0000160	44.11	silver quality
adrenal gland	UBERON:0002369	44.11	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.